Wall clock time and date at job start Tue Mar 31 2020 00:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46772 * 2 1 4 4 C 1.52994 * 109.47481 * 120.00224 * 2 1 3 5 5 N 1.46495 * 109.47442 * 174.99865 * 4 2 1 6 6 C 1.34774 * 120.00303 * 179.97438 * 5 4 2 7 7 O 1.21694 * 120.00004 * 0.02562 * 6 5 4 8 8 C 1.46655 * 120.00376 * 180.02562 * 6 5 4 9 9 O 1.34942 * 126.00316 * 0.02562 * 8 6 5 10 10 C 1.33954 * 109.37664 * 179.97438 * 9 8 6 11 11 C 1.35145 * 108.75142 * 0.02562 * 10 9 8 12 12 C 1.36469 * 126.00871 * 179.97438 * 8 6 5 13 13 C 1.51072 * 143.67062 * 359.97438 * 12 8 6 14 14 C 1.54380 * 105.24250 * 197.17875 * 13 12 8 15 15 C 1.51140 * 143.44117 * 179.97438 * 11 10 9 16 16 N 1.46507 * 109.46654 * 240.00187 * 2 1 3 17 17 C 1.36936 * 120.00037 * 85.00183 * 16 2 1 18 18 H 1.08001 * 119.99663 * 359.97438 * 17 16 2 19 19 C 1.38808 * 119.99890 * 179.97438 * 17 16 2 20 20 N 1.31615 * 120.00253 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99972 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46883 * 60.00294 * 21 19 17 23 23 H 1.48497 * 109.47420 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47235 * 300.00595 * 21 19 17 25 25 H 1.08998 * 109.47061 * 299.99572 * 1 2 3 26 26 H 1.08996 * 109.47351 * 60.00144 * 1 2 3 27 27 H 1.09003 * 109.47273 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47272 * 54.99788 * 4 2 1 29 29 H 1.09003 * 109.47100 * 295.00189 * 4 2 1 30 30 H 0.97003 * 119.99768 * 0.02562 * 5 4 2 31 31 H 1.07994 * 125.62301 * 180.25735 * 10 9 8 32 32 H 1.09004 * 110.28955 * 316.11608 * 13 12 8 33 33 H 1.08997 * 110.29311 * 78.13742 * 13 12 8 34 34 H 1.09001 * 110.76049 * 91.85638 * 14 13 12 35 35 H 1.09005 * 110.76272 * 215.04782 * 14 13 12 36 36 H 1.09002 * 110.29062 * 281.81821 * 15 11 10 37 37 H 1.08997 * 110.28821 * 43.92923 * 15 11 10 38 38 H 0.96999 * 120.00031 * 264.99112 * 16 2 1 39 39 H 0.97000 * 120.00365 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1732 -1.4283 2.1910 7 8 3.5681 -1.8849 3.1430 8 6 5.6348 -1.5331 2.1325 9 8 6.4241 -1.0714 1.1401 10 6 7.7038 -1.3446 1.4265 11 6 7.7553 -1.9896 2.6130 12 6 6.4358 -2.1137 3.0725 13 6 6.4293 -2.8289 4.4032 14 6 7.8819 -2.7408 4.9184 15 6 8.6982 -2.6174 3.6136 16 7 2.0182 -0.6906 -1.1963 17 6 2.1490 -0.0075 -2.3758 18 1 1.8918 1.0404 -2.4243 19 6 2.6121 -0.6617 -3.5091 20 7 2.9260 -1.9385 -3.4498 21 14 2.7898 0.2700 -5.1184 22 1 3.7444 1.3932 -4.9373 23 1 3.2999 -0.6480 -6.1682 24 1 1.4671 0.8060 -5.5288 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.6054 -1.7199 1.2951 29 1 1.7517 -0.1584 2.1369 30 1 3.9824 -0.4621 0.4318 31 1 8.5544 -1.0880 0.8125 32 1 5.7515 -2.3310 5.0966 33 1 6.1360 -3.8704 4.2712 34 1 8.0169 -1.8589 5.5446 35 1 8.1542 -3.6449 5.4632 36 1 9.0149 -3.6017 3.2685 37 1 9.5642 -1.9748 3.7716 38 1 2.2490 -1.6318 -1.1527 39 1 3.2493 -2.3958 -4.2419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480509708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:13 Heat of formation + Delta-G solvation = -13.181812 kcal Electronic energy + Delta-G solvation = -21387.498208 eV Core-core repulsion = 18103.882349 eV Total energy + Delta-G solvation = -3283.615859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.79039 -39.12250 -37.35112 -36.30105 -33.55731 -31.89497 -30.66927 -30.38968 -28.75053 -27.42289 -25.68377 -23.73500 -22.99496 -21.58653 -20.30241 -20.12564 -19.31758 -17.63416 -17.13842 -16.46555 -15.84632 -15.68493 -15.20745 -15.03182 -14.40003 -14.03655 -13.94941 -13.71339 -13.15802 -13.00782 -12.78568 -12.27083 -12.11389 -11.98341 -11.80357 -11.65485 -11.37877 -11.31508 -11.28440 -10.86111 -10.76349 -10.38498 -10.07471 -9.93661 -9.71674 -9.27718 -8.98441 -8.80494 -8.40201 -7.04561 -5.80756 -3.11438 1.20438 2.32091 2.83700 3.40849 3.41846 3.45945 3.46726 3.60814 3.98721 4.54761 4.64885 4.82959 4.87656 5.03284 5.12776 5.41193 5.47628 5.52252 5.56549 5.58613 5.62798 5.73075 5.85741 5.92883 6.01366 6.03711 6.07166 6.14962 6.17454 6.29722 6.37246 6.55207 6.70593 6.77870 6.93247 7.04409 7.65536 7.88294 8.36160 8.42274 9.48135 10.02687 10.38296 11.41085 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.004401 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.244192 B = 6360.841204 C = 7474.330007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.054 0.946 4 C 0.114 3.886 5 N -0.699 5.699 6 C 0.598 3.402 7 O -0.534 6.534 8 C -0.053 4.053 9 O -0.148 6.148 10 C 0.010 3.990 11 C -0.224 4.224 12 C -0.115 4.115 13 C -0.052 4.052 14 C -0.119 4.119 15 C -0.044 4.044 16 N -0.724 5.724 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.416 0.584 31 H 0.208 0.792 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.385 0.615 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.892 0.443 14.445 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.072 0.928 4 C -0.010 4.010 5 N -0.350 5.350 6 C 0.383 3.617 7 O -0.414 6.414 8 C -0.105 4.105 9 O -0.043 6.043 10 C -0.059 4.059 11 C -0.225 4.225 12 C -0.118 4.118 13 C -0.089 4.089 14 C -0.156 4.156 15 C -0.081 4.081 16 N -0.366 5.366 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.253 0.747 31 H 0.225 0.775 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.219 0.781 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.322 0.395 14.695 17.407 hybrid contribution 0.478 0.262 -1.484 1.580 sum 9.799 0.657 13.212 16.462 Atomic orbital electron populations 1.22357 0.98156 1.01326 1.00418 1.20516 0.92779 0.95776 0.86056 0.92784 1.21783 0.78778 1.01464 0.99008 1.45925 1.08611 1.57559 1.22898 1.16557 0.83029 0.78883 0.83206 1.90823 1.67071 1.49567 1.33924 1.21271 0.91344 1.07605 0.90283 1.84271 1.16406 1.62581 1.41076 1.23357 0.84806 1.00864 0.96914 1.21282 0.97162 1.06438 0.97658 1.21132 0.92790 0.99896 0.98032 1.20514 0.97176 0.99815 0.91401 1.22387 0.94085 1.02422 0.96710 1.20410 0.96151 0.99820 0.91752 1.42471 1.78100 1.10836 1.05241 1.19174 1.37172 0.93891 0.87335 0.91140 1.24740 1.01893 0.95901 0.98018 1.69654 1.50375 1.08656 1.29048 0.86287 0.77776 0.78600 0.83591 1.21244 1.21733 1.21284 0.94145 0.92258 0.93159 0.91451 0.91454 0.74719 0.77515 0.90126 0.89876 0.90937 0.90335 0.90385 0.90951 0.78059 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.49 37.16 0.35 -2.46 16 2 C 0.16 3.03 3.05 -67.93 -0.21 2.82 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 C 0.11 2.00 5.23 -4.05 -0.02 1.97 16 5 N -0.70 -12.71 5.38 -61.63 -0.33 -13.04 16 6 C 0.60 11.07 7.79 -12.86 -0.10 10.97 16 7 O -0.53 -10.79 16.87 5.19 0.09 -10.70 16 8 C -0.05 -0.90 7.13 -36.82 -0.26 -1.16 16 9 O -0.15 -2.37 10.40 4.85 0.05 -2.32 16 10 C 0.01 0.13 12.08 29.63 0.36 0.49 16 11 C -0.22 -2.82 6.93 -104.74 -0.73 -3.54 16 12 C -0.12 -1.72 6.66 -104.31 -0.69 -2.42 16 13 C -0.05 -0.63 6.76 -26.98 -0.18 -0.81 16 14 C -0.12 -1.04 7.06 -25.27 -0.18 -1.22 16 15 C -0.04 -0.41 6.76 -26.93 -0.18 -0.59 16 16 N -0.72 -17.32 4.56 -53.43 -0.24 -17.56 16 17 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -27.48 13.06 55.49 0.72 -26.75 16 21 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.42 7.86 7.90 -40.82 -0.32 7.54 16 31 H 0.21 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.39 10.03 7.80 -40.82 -0.32 9.71 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -31.39 333.03 -7.49 -38.88 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.68 Total: 12.57 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.09 Total: -2.96 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.15 Total: -57.36 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.14 Total: -13.02 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.39 -7.49 -38.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480509708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.694 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds