Wall clock time and date at job start Tue Mar 31 2020 00:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47292 * 2 1 4 4 C 1.50701 * 109.46687 * 240.00201 * 2 1 3 5 5 H 1.08006 * 119.99747 * 239.99729 * 4 2 1 6 6 C 1.37874 * 120.00069 * 60.00290 * 4 2 1 7 7 N 1.31516 * 119.99871 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99753 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47509 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46639 * 120.00114 * 8 6 4 11 11 H 1.48497 * 109.46931 * 239.99594 * 8 6 4 12 12 O 1.45201 * 109.46984 * 120.00332 * 2 1 3 13 13 C 1.34728 * 116.99995 * 269.99471 * 12 2 1 14 14 O 1.21493 * 120.00045 * 0.02562 * 13 12 2 15 15 C 1.47579 * 120.00081 * 179.72513 * 13 12 2 16 16 N 1.32254 * 126.68306 * 0.30930 * 15 13 12 17 17 N 1.28842 * 110.14266 * 179.97438 * 16 15 13 18 18 H 0.96996 * 124.97759 * 179.97438 * 17 16 15 19 19 C 1.34328 * 110.05128 * 359.94107 * 17 16 15 20 20 C 1.35567 * 107.22616 * 359.84304 * 19 17 16 21 21 C 1.50381 * 124.61979 * 179.39411 * 20 19 17 22 22 C 1.53476 * 108.35008 * 344.34079 * 21 20 19 23 23 H 1.09005 * 109.46560 * 289.22848 * 22 21 20 24 24 C 1.53006 * 109.45804 * 169.25603 * 22 21 20 25 25 C 1.53101 * 109.50803 * 49.24572 * 22 21 20 26 26 C 1.50720 * 128.89390 * 180.20523 * 19 17 16 27 27 H 1.09006 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46742 * 299.99523 * 1 2 3 29 29 H 1.08999 * 109.47253 * 59.99790 * 1 2 3 30 30 H 0.96999 * 119.99775 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.86169 * 224.50877 * 21 20 19 32 32 H 1.09000 * 109.50878 * 103.96142 * 21 20 19 33 33 H 1.09006 * 109.46923 * 299.96392 * 24 22 21 34 34 H 1.08994 * 109.47405 * 59.96514 * 24 22 21 35 35 H 1.09005 * 109.46573 * 179.97438 * 24 22 21 36 36 H 1.09004 * 109.44155 * 169.89039 * 25 22 21 37 37 H 1.08994 * 109.41333 * 49.98107 * 25 22 21 38 38 H 1.09001 * 109.69340 * 283.00586 * 26 19 17 39 39 H 1.09003 * 109.69091 * 43.55238 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 3.1472 -2.2864 -3.6039 10 1 1.1675 -1.5864 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 8 2.0140 -0.6846 1.1855 13 6 2.2180 0.0667 2.2852 14 8 1.9971 1.2610 2.2545 15 6 2.7034 -0.5623 3.5289 16 7 2.9847 -1.8418 3.7095 17 7 3.3841 -2.0420 4.9180 18 1 3.6458 -2.9022 5.2818 19 6 3.3857 -0.8848 5.6002 20 6 2.9628 0.0829 4.7501 21 6 2.8051 1.5328 5.1167 22 6 2.8126 1.6479 6.6471 23 1 1.8881 1.2316 7.0472 24 6 2.9235 3.1206 7.0469 25 6 4.0070 0.8744 7.2121 26 6 3.7773 -0.6317 7.0334 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.7081 1.1610 -3.4843 31 1 1.8622 1.9136 4.7242 32 1 3.6342 2.1055 4.7011 33 1 3.8481 3.5370 6.6471 34 1 2.0732 3.6713 6.6448 35 1 2.9284 3.2025 8.1339 36 1 4.1174 1.1013 8.2725 37 1 4.9127 1.1688 6.6820 38 1 2.9779 -0.9625 7.6965 39 1 4.6944 -1.1737 7.2648 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515225884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:01 Heat of formation + Delta-G solvation = -57.932726 kcal Electronic energy + Delta-G solvation = -21653.993115 eV Core-core repulsion = 18368.436711 eV Total energy + Delta-G solvation = -3285.556404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.95683 -41.04531 -38.48455 -37.58369 -35.35614 -33.83781 -32.56158 -31.74514 -30.57567 -27.54222 -27.45756 -26.03029 -24.26907 -23.18289 -22.13780 -21.10879 -20.07596 -18.88079 -18.75596 -18.19576 -17.34349 -17.26324 -16.35145 -16.31871 -15.69816 -15.15815 -14.96219 -14.54953 -14.22657 -14.17335 -14.02768 -13.89881 -13.46597 -13.25170 -13.02743 -12.96469 -12.83684 -12.45929 -12.42292 -12.16976 -11.88446 -11.79811 -11.68371 -11.62153 -11.43297 -11.20408 -11.01620 -10.63153 -10.46744 -9.70552 -8.30700 -6.47709 0.25595 0.99815 1.39699 1.41626 1.54381 1.66198 2.07403 2.15443 2.41672 2.99489 3.36140 3.55915 3.81536 3.95835 4.09969 4.21254 4.28138 4.47104 4.49655 4.61796 4.70844 4.75613 4.79161 4.81730 4.90618 4.99459 5.04075 5.07248 5.10991 5.20383 5.32273 5.41779 5.45402 5.47719 5.57756 5.58471 5.83514 6.00971 6.09779 6.54737 6.70006 6.95799 7.23620 8.77776 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030231 B = 0.003984 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.987251 B = 7027.081697 C = 7599.104184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.215 3.785 3 H 0.012 0.988 4 C -0.550 4.550 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.986 3.014 9 H -0.266 1.266 10 H -0.268 1.268 11 H -0.272 1.272 12 O -0.353 6.353 13 C 0.533 3.467 14 O -0.534 6.534 15 C -0.022 4.022 16 N -0.261 5.261 17 N -0.348 5.348 18 H 0.466 0.534 19 C 0.034 3.966 20 C -0.165 4.165 21 C -0.040 4.040 22 C -0.087 4.087 23 H 0.077 0.923 24 C -0.145 4.145 25 C -0.108 4.108 26 C -0.042 4.042 27 H 0.043 0.957 28 H 0.023 0.977 29 H 0.086 0.914 30 H 0.272 0.728 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.589 -2.800 24.061 25.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.162 3.838 3 H 0.029 0.971 4 C -0.588 4.588 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.809 3.191 9 H -0.191 1.191 10 H -0.193 1.193 11 H -0.197 1.197 12 O -0.269 6.269 13 C 0.377 3.623 14 O -0.423 6.423 15 C -0.177 4.177 16 N -0.100 5.100 17 N -0.065 5.065 18 H 0.315 0.685 19 C -0.094 4.094 20 C -0.175 4.175 21 C -0.078 4.078 22 C -0.106 4.106 23 H 0.095 0.905 24 C -0.202 4.202 25 C -0.146 4.146 26 C -0.080 4.080 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.408 -3.319 23.252 24.346 hybrid contribution -0.045 0.280 -1.044 1.082 sum 6.362 -3.039 22.208 23.301 Atomic orbital electron populations 1.21980 0.96518 1.00340 1.00966 1.20469 0.92243 0.92239 0.78821 0.97062 1.21290 1.33587 1.13902 0.89978 0.91887 1.25842 0.94620 0.95673 1.02036 1.70018 1.36433 1.23570 1.25291 0.85096 0.78436 0.78345 0.77263 1.19061 1.19304 1.19745 1.86623 1.75955 1.43154 1.21156 1.20243 0.73981 0.84548 0.83534 1.90736 1.50251 1.16513 1.84772 1.20528 1.11754 0.91585 0.93830 1.74001 1.16180 1.18053 1.01789 1.43190 1.45902 1.11375 1.06023 0.68508 1.21807 1.04311 0.84729 0.98522 1.20183 1.07608 0.98889 0.90815 1.20086 1.01448 0.88840 0.97423 1.21252 1.00030 0.97316 0.91972 0.90467 1.21810 1.01695 0.94421 1.02289 1.21677 0.97449 0.92447 1.03005 1.20526 1.04062 0.98379 0.85036 0.93766 0.95798 0.89563 0.91820 0.92723 0.91742 0.92678 0.93528 0.90276 0.87502 0.91863 0.87190 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.78 9.33 71.98 0.67 -7.11 16 2 C 0.22 12.87 2.56 29.85 0.08 12.95 16 3 H 0.01 0.76 7.16 -2.39 -0.02 0.74 16 4 C -0.55 -33.42 8.90 25.60 0.23 -33.19 16 5 H 0.06 3.81 7.81 -2.91 -0.02 3.79 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.92 -54.27 11.32 21.45 0.24 -54.03 16 8 Si 0.99 44.66 29.54 68.60 2.03 46.69 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 O -0.35 -19.73 9.87 -56.38 -0.56 -20.29 16 13 C 0.53 26.93 7.94 70.29 0.56 27.48 16 14 O -0.53 -28.58 15.06 19.86 0.30 -28.28 16 15 C -0.02 -0.88 7.16 42.11 0.30 -0.58 16 16 N -0.26 -9.24 12.27 -48.67 -0.60 -9.84 16 17 N -0.35 -7.77 6.82 -48.17 -0.33 -8.10 16 18 H 0.47 5.65 8.96 -219.81 -1.97 3.68 16 19 C 0.03 0.73 7.12 41.56 0.30 1.02 16 20 C -0.17 -5.14 5.99 -20.02 -0.12 -5.26 16 21 C -0.04 -1.12 4.84 29.91 0.14 -0.97 16 22 C -0.09 -1.50 2.70 -10.60 -0.03 -1.53 16 23 H 0.08 1.27 8.12 -2.38 -0.02 1.25 16 24 C -0.14 -2.16 9.16 71.98 0.66 -1.50 16 25 C -0.11 -1.20 5.19 30.76 0.16 -1.04 16 26 C -0.04 -0.40 6.31 29.99 0.19 -0.21 16 27 H 0.04 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 5.00 6.07 -2.39 -0.01 4.99 16 30 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.05 1.83 7.68 -2.39 -0.02 1.81 16 32 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 33 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.11 0.57 8.11 -2.38 -0.02 0.56 16 37 H 0.06 0.82 8.11 -2.39 -0.02 0.80 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -78.53 324.16 3.76 -74.76 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -0.91 Total: 7.54 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 3.58 Total: -8.45 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -0.68 Total: -71.97 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -0.26 Total: -48.57 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -78.53 3.76 -74.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515225884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.831 kcal (2) G-P(sol) polarization free energy of solvation -78.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds