Wall clock time and date at job start Tue Mar 31 2020 00:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46916 * 2 1 4 4 C 1.52999 * 109.47302 * 119.99752 * 2 1 3 5 5 N 1.46505 * 109.46984 * 175.00035 * 4 2 1 6 6 C 1.46498 * 119.99765 * 270.00046 * 5 4 2 7 7 C 1.34774 * 119.99754 * 90.00244 * 5 4 2 8 8 O 1.21771 * 120.00346 * 0.02562 * 7 5 4 9 9 C 1.41555 * 119.99391 * 179.97438 * 7 5 4 10 10 C 1.35625 * 119.99696 * 173.19129 * 9 7 5 11 11 C 1.41610 * 120.00222 * 351.36697 * 10 9 7 12 12 C 1.37948 * 126.10734 * 139.35145 * 11 10 9 13 13 C 1.40311 * 106.52684 * 179.72891 * 12 11 10 14 14 C 1.35149 * 107.20742 * 0.40584 * 13 12 11 15 15 O 1.34019 * 109.03567 * 359.58264 * 14 13 12 16 16 N 1.46504 * 109.47030 * 240.00187 * 2 1 3 17 17 C 1.36934 * 120.00179 * 84.99907 * 16 2 1 18 18 H 1.08003 * 119.99953 * 359.97438 * 17 16 2 19 19 C 1.38809 * 119.99985 * 179.97438 * 17 16 2 20 20 N 1.31622 * 120.00000 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00062 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46866 * 89.99736 * 21 19 17 23 23 H 1.48495 * 109.47022 * 209.99717 * 21 19 17 24 24 H 1.48495 * 109.47097 * 330.00307 * 21 19 17 25 25 H 1.09003 * 109.47524 * 300.00287 * 1 2 3 26 26 H 1.08998 * 109.47227 * 59.99803 * 1 2 3 27 27 H 1.09002 * 109.47419 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46791 * 55.00077 * 4 2 1 29 29 H 1.08997 * 109.47028 * 295.00180 * 4 2 1 30 30 H 1.08999 * 109.47234 * 270.00256 * 6 5 4 31 31 H 1.09005 * 109.47517 * 30.00117 * 6 5 4 32 32 H 1.08996 * 109.46948 * 150.00270 * 6 5 4 33 33 H 1.08002 * 120.00770 * 353.19388 * 9 7 5 34 34 H 1.07998 * 120.00019 * 171.36042 * 10 9 7 35 35 H 1.08002 * 126.73648 * 0.02562 * 12 11 10 36 36 H 1.08005 * 126.39762 * 180.28492 * 13 12 11 37 37 H 1.08008 * 125.48395 * 179.85133 * 14 13 12 38 38 H 0.96997 * 119.99476 * 264.99578 * 16 2 1 39 39 H 0.96999 * 120.00082 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1258 -1.9918 0.5611 7 6 4.2675 0.1493 1.7155 8 8 3.7474 1.1179 2.2391 9 6 5.6783 0.0475 1.6592 10 6 6.4498 1.0880 2.0610 11 6 5.8536 2.3366 2.3626 12 6 6.1904 3.1658 3.4123 13 6 5.3516 4.2868 3.3203 14 6 4.5487 4.0987 2.2496 15 8 4.8549 2.9277 1.6740 16 7 2.0183 -0.6906 -1.1962 17 6 2.1490 -0.0075 -2.3758 18 1 1.8918 1.0403 -2.4244 19 6 2.6122 -0.6617 -3.5090 20 7 2.7374 -0.0052 -4.6429 21 14 3.0579 -2.4738 -3.4248 22 1 1.8611 -3.2932 -3.7440 23 1 4.1334 -2.7652 -4.4063 24 1 3.5330 -2.8036 -2.0571 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.6054 -1.7198 1.2952 29 1 1.7516 -0.1582 2.1369 30 1 4.2822 -2.7687 1.3096 31 1 3.4757 -2.3722 -0.2268 32 1 5.0851 -1.7020 0.1324 33 1 6.1403 -0.8588 1.2963 34 1 7.5189 0.9643 2.1510 35 1 6.9536 2.9893 4.1559 36 1 5.3470 5.1399 3.9828 37 1 3.7861 4.7838 1.9097 38 1 2.2490 -1.6317 -1.1526 39 1 3.0608 -0.4625 -5.4350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571374953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:08 Heat of formation + Delta-G solvation = 35.487598 kcal Electronic energy + Delta-G solvation = -22283.698962 eV Core-core repulsion = 19002.193567 eV Total energy + Delta-G solvation = -3281.505395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.17852 -39.75142 -36.60216 -34.29034 -33.93653 -32.62443 -32.01586 -29.60869 -28.71466 -26.96131 -25.92290 -23.66880 -22.81679 -21.44281 -20.67342 -19.97405 -18.61827 -17.64898 -17.54357 -16.57189 -15.70350 -15.61242 -15.07185 -14.74361 -14.21768 -13.96816 -13.79502 -13.25583 -13.03493 -12.67871 -12.60029 -12.54391 -12.35397 -12.26944 -12.13803 -11.75424 -11.54090 -11.35970 -10.91637 -10.64769 -10.54409 -10.04280 -9.95783 -9.68701 -9.55883 -9.44257 -8.93844 -8.21983 -7.78234 -7.22772 -5.74335 -3.08889 0.72306 2.31754 2.84461 3.25009 3.35156 3.40778 3.42047 3.44011 3.73689 4.57355 4.82462 4.90950 5.14519 5.20589 5.24519 5.34220 5.45254 5.50820 5.55907 5.66870 5.73497 5.82801 5.85275 6.02887 6.08003 6.13528 6.14738 6.20794 6.26800 6.40553 6.50490 6.69478 6.79132 6.85128 7.11573 7.43399 7.73118 8.03426 8.44110 8.54735 9.22649 9.94518 10.14951 11.44562 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.005402 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.889009 B = 5181.546999 C = 5223.861654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.161 3.839 3 H 0.060 0.940 4 C 0.110 3.890 5 N -0.595 5.595 6 C 0.075 3.925 7 C 0.540 3.460 8 O -0.531 6.531 9 C -0.195 4.195 10 C -0.007 4.007 11 C 0.016 3.984 12 C -0.190 4.190 13 C -0.231 4.231 14 C -0.015 4.015 15 O -0.126 6.126 16 N -0.744 5.744 17 C -0.233 4.233 18 H 0.088 0.912 19 C 0.001 3.999 20 N -0.936 5.936 21 Si 0.880 3.120 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.274 1.274 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.196 0.804 38 H 0.357 0.643 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.485 0.097 16.617 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 H 0.078 0.922 4 C -0.014 4.014 5 N -0.326 5.326 6 C -0.069 4.069 7 C 0.332 3.668 8 O -0.411 6.411 9 C -0.215 4.215 10 C -0.027 4.027 11 C -0.035 4.035 12 C -0.210 4.210 13 C -0.250 4.250 14 C -0.086 4.086 15 O -0.018 6.018 16 N -0.388 5.388 17 C -0.363 4.363 18 H 0.106 0.894 19 C -0.194 4.194 20 N -0.585 5.585 21 Si 0.712 3.288 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.201 1.201 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.213 0.787 38 H 0.191 0.809 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.066 0.617 16.433 17.527 hybrid contribution 0.349 -1.364 -0.145 1.415 sum 6.415 -0.747 16.288 17.521 Atomic orbital electron populations 1.22338 0.98391 1.00779 1.00750 1.20616 0.91995 0.96640 0.85662 0.92179 1.21833 0.78982 1.00912 0.99650 1.47509 1.06775 1.21398 1.56953 1.22046 0.99700 0.87465 0.97671 1.17045 0.87847 0.82613 0.79330 1.90823 1.75044 1.30146 1.45089 1.22449 0.94467 1.00998 1.03622 1.20592 0.99133 0.88652 0.94360 1.19578 0.91811 0.95832 0.96294 1.22045 1.03726 0.94802 1.00393 1.21553 1.00841 1.01140 1.01438 1.24147 1.01152 0.87711 0.95552 1.84350 1.41816 1.28267 1.47400 1.42805 1.79766 1.09096 1.07162 1.19078 1.36164 0.95564 0.85455 0.89404 1.24655 1.01843 0.97306 0.95605 1.69700 1.53145 1.35388 1.00229 0.86690 0.78123 0.87159 0.76849 1.21315 1.21886 1.20054 0.94025 0.92134 0.93640 0.91289 0.89845 0.93294 0.89972 0.91057 0.84454 0.83027 0.83762 0.83908 0.78720 0.80926 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.16 3.23 3.20 -67.93 -0.22 3.01 16 3 H 0.06 1.38 8.08 -51.93 -0.42 0.96 16 4 C 0.11 1.84 5.05 -4.04 -0.02 1.82 16 5 N -0.59 -9.99 2.73 -185.03 -0.50 -10.50 16 6 C 0.07 1.09 9.70 59.85 0.58 1.67 16 7 C 0.54 9.49 7.24 -15.00 -0.11 9.38 16 8 O -0.53 -10.62 12.02 -19.65 -0.24 -10.86 16 9 C -0.19 -2.75 9.04 -39.25 -0.35 -3.10 16 10 C -0.01 -0.10 9.95 -39.23 -0.39 -0.49 16 11 C 0.02 0.24 5.30 -38.40 -0.20 0.04 16 12 C -0.19 -2.54 10.90 -38.91 -0.42 -2.96 16 13 C -0.23 -3.00 10.87 -39.90 -0.43 -3.44 16 14 C -0.01 -0.22 12.06 29.63 0.36 0.14 16 15 O -0.13 -2.26 7.86 -20.10 -0.16 -2.42 16 16 N -0.74 -17.26 4.37 -53.43 -0.23 -17.49 16 17 C -0.23 -6.54 10.41 -15.06 -0.16 -6.70 16 18 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 19 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 20 N -0.94 -29.47 13.97 55.49 0.78 -28.70 16 21 Si 0.88 21.33 27.73 -169.99 -4.71 16.61 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.27 -5.82 4.90 56.52 0.28 -5.55 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 29 H 0.08 1.38 7.42 -51.93 -0.39 0.99 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.37 3.94 -51.93 -0.20 1.16 16 32 H 0.07 0.99 6.19 -51.93 -0.32 0.67 16 33 H 0.14 1.52 6.22 -52.49 -0.33 1.20 16 34 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 37 H 0.20 2.21 8.06 -52.48 -0.42 1.79 16 38 H 0.36 7.89 3.49 -40.82 -0.14 7.74 16 39 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -34.86 321.07 -6.63 -41.49 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.28 Total: 10.26 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.11 Total: -3.24 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.04 Total: -56.69 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.39 Total: -13.28 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.86 -6.63 -41.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571374953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.980 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds