Wall clock time and date at job start Tue Mar 31 2020 00:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46916 * 2 1 4 4 C 1.52999 * 109.47302 * 119.99752 * 2 1 3 5 5 N 1.46505 * 109.46984 * 175.00035 * 4 2 1 6 6 C 1.46498 * 119.99765 * 270.00046 * 5 4 2 7 7 C 1.34774 * 119.99754 * 90.00244 * 5 4 2 8 8 O 1.21771 * 120.00346 * 0.02562 * 7 5 4 9 9 C 1.41555 * 119.99391 * 179.97438 * 7 5 4 10 10 C 1.35625 * 119.99696 * 173.19129 * 9 7 5 11 11 C 1.41610 * 120.00222 * 351.36697 * 10 9 7 12 12 C 1.37948 * 126.10734 * 139.35145 * 11 10 9 13 13 C 1.40311 * 106.52684 * 179.72891 * 12 11 10 14 14 C 1.35149 * 107.20742 * 0.40584 * 13 12 11 15 15 O 1.34019 * 109.03567 * 359.58264 * 14 13 12 16 16 N 1.46504 * 109.47030 * 240.00187 * 2 1 3 17 17 C 1.36934 * 120.00179 * 84.99907 * 16 2 1 18 18 H 1.08003 * 119.99953 * 359.97438 * 17 16 2 19 19 C 1.38809 * 119.99985 * 179.97438 * 17 16 2 20 20 N 1.31622 * 120.00000 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00062 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46866 * 89.99736 * 21 19 17 23 23 H 1.48495 * 109.47022 * 209.99717 * 21 19 17 24 24 H 1.48495 * 109.47097 * 330.00307 * 21 19 17 25 25 H 1.09003 * 109.47524 * 300.00287 * 1 2 3 26 26 H 1.08998 * 109.47227 * 59.99803 * 1 2 3 27 27 H 1.09002 * 109.47419 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46791 * 55.00077 * 4 2 1 29 29 H 1.08997 * 109.47028 * 295.00180 * 4 2 1 30 30 H 1.08999 * 109.47234 * 270.00256 * 6 5 4 31 31 H 1.09005 * 109.47517 * 30.00117 * 6 5 4 32 32 H 1.08996 * 109.46948 * 150.00270 * 6 5 4 33 33 H 1.08002 * 120.00770 * 353.19388 * 9 7 5 34 34 H 1.07998 * 120.00019 * 171.36042 * 10 9 7 35 35 H 1.08002 * 126.73648 * 0.02562 * 12 11 10 36 36 H 1.08005 * 126.39762 * 180.28492 * 13 12 11 37 37 H 1.08008 * 125.48395 * 179.85133 * 14 13 12 38 38 H 0.96997 * 119.99476 * 264.99578 * 16 2 1 39 39 H 0.96999 * 120.00082 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1258 -1.9918 0.5611 7 6 4.2675 0.1493 1.7155 8 8 3.7474 1.1179 2.2391 9 6 5.6783 0.0475 1.6592 10 6 6.4498 1.0880 2.0610 11 6 5.8536 2.3366 2.3626 12 6 6.1904 3.1658 3.4123 13 6 5.3516 4.2868 3.3203 14 6 4.5487 4.0987 2.2496 15 8 4.8549 2.9277 1.6740 16 7 2.0183 -0.6906 -1.1962 17 6 2.1490 -0.0075 -2.3758 18 1 1.8918 1.0403 -2.4244 19 6 2.6122 -0.6617 -3.5090 20 7 2.7374 -0.0052 -4.6429 21 14 3.0579 -2.4738 -3.4248 22 1 1.8611 -3.2932 -3.7440 23 1 4.1334 -2.7652 -4.4063 24 1 3.5330 -2.8036 -2.0571 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.6054 -1.7198 1.2952 29 1 1.7516 -0.1582 2.1369 30 1 4.2822 -2.7687 1.3096 31 1 3.4757 -2.3722 -0.2268 32 1 5.0851 -1.7020 0.1324 33 1 6.1403 -0.8588 1.2963 34 1 7.5189 0.9643 2.1510 35 1 6.9536 2.9893 4.1559 36 1 5.3470 5.1399 3.9828 37 1 3.7861 4.7838 1.9097 38 1 2.2490 -1.6317 -1.1526 39 1 3.0608 -0.4625 -5.4350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571374953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:08 Heat of formation + Delta-G solvation = 12.742947 kcal Electronic energy + Delta-G solvation = -22284.685244 eV Core-core repulsion = 19002.193567 eV Total energy + Delta-G solvation = -3282.491677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.27829 -41.01913 -38.15585 -35.84024 -35.04330 -34.01853 -33.67870 -31.46727 -29.86184 -28.22119 -27.17306 -25.51640 -24.17162 -22.51326 -22.03424 -21.44428 -19.92843 -19.53416 -18.74118 -17.74996 -16.99227 -16.83132 -16.52963 -16.44978 -15.61725 -15.44739 -15.01523 -14.86952 -14.44563 -14.00100 -13.95762 -13.73470 -13.63561 -13.44015 -13.34964 -13.24130 -13.05835 -12.77946 -12.65007 -12.39755 -12.20119 -11.78441 -11.67310 -11.02228 -11.01415 -10.83942 -10.62504 -9.58562 -9.23546 -8.85383 -7.99369 -5.33165 -0.32766 1.22243 1.33640 1.43908 1.50762 1.80354 2.22225 2.36619 2.51085 2.61218 3.31833 3.55460 3.80347 3.92051 4.07756 4.17580 4.19946 4.29080 4.33110 4.49939 4.59092 4.64120 4.68977 4.82341 4.84967 4.86736 4.92271 5.03006 5.10943 5.13597 5.22773 5.35491 5.41367 5.68547 5.74700 5.79187 6.22323 6.36538 6.50578 7.09999 7.29528 7.82741 8.07516 9.22929 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.005402 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.889009 B = 5181.546999 C = 5223.861654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.016 0.984 4 C 0.118 3.882 5 N -0.603 5.603 6 C 0.070 3.930 7 C 0.526 3.474 8 O -0.568 6.568 9 C -0.219 4.219 10 C 0.004 3.996 11 C -0.019 4.019 12 C -0.185 4.185 13 C -0.227 4.227 14 C -0.044 4.044 15 O -0.167 6.167 16 N -0.738 5.738 17 C -0.224 4.224 18 H 0.038 0.962 19 C -0.069 4.069 20 N -0.991 5.991 21 Si 0.954 3.046 22 H -0.283 1.283 23 H -0.299 1.299 24 H -0.225 1.225 25 H 0.067 0.933 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.169 0.831 34 H 0.199 0.801 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.211 0.789 38 H 0.368 0.632 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.962 -2.391 19.091 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.050 3.950 3 H 0.035 0.965 4 C -0.006 4.006 5 N -0.334 5.334 6 C -0.073 4.073 7 C 0.319 3.681 8 O -0.450 6.450 9 C -0.239 4.239 10 C -0.015 4.015 11 C -0.069 4.069 12 C -0.204 4.204 13 C -0.246 4.246 14 C -0.113 4.113 15 O -0.062 6.062 16 N -0.384 5.384 17 C -0.355 4.355 18 H 0.056 0.944 19 C -0.260 4.260 20 N -0.642 5.642 21 Si 0.781 3.219 22 H -0.209 1.209 23 H -0.226 1.226 24 H -0.148 1.148 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.187 0.813 34 H 0.215 0.785 35 H 0.194 0.806 36 H 0.189 0.811 37 H 0.227 0.773 38 H 0.204 0.796 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.537 -1.887 18.972 20.501 hybrid contribution -0.149 -0.380 -0.861 0.953 sum 7.388 -2.267 18.110 19.690 Atomic orbital electron populations 1.22195 0.96489 1.02012 1.00628 1.20717 0.93324 0.94696 0.86273 0.96539 1.21708 0.79677 1.01955 0.97238 1.47675 1.06642 1.22082 1.56958 1.22210 0.99236 0.87508 0.98309 1.17713 0.89444 0.82087 0.78825 1.90801 1.75964 1.31417 1.46795 1.22605 0.92699 1.02989 1.05574 1.21237 1.01160 0.87167 0.91921 1.20305 0.91924 0.97317 0.97324 1.22510 1.03825 0.94029 1.00064 1.21969 0.99806 1.01885 1.00909 1.24712 1.02413 0.87630 0.96580 1.84313 1.43215 1.29627 1.48995 1.42637 1.80014 1.09380 1.06372 1.18892 1.35197 0.93788 0.87626 0.94431 1.25582 1.02245 1.03361 0.94796 1.69927 1.54908 1.38045 1.01291 0.85510 0.77590 0.79564 0.79257 1.20932 1.22624 1.14834 0.91382 0.95069 0.91605 0.88169 0.89785 0.89319 0.91746 0.90401 0.81336 0.78454 0.80599 0.81057 0.77273 0.79642 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 9.49 71.98 0.68 -4.73 16 2 C 0.16 6.42 3.20 44.99 0.14 6.57 16 3 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 4 C 0.12 3.76 5.05 86.38 0.44 4.20 16 5 N -0.60 -19.13 2.73 -857.50 -2.34 -21.47 16 6 C 0.07 1.78 9.70 127.77 1.24 3.02 16 7 C 0.53 18.09 7.24 85.06 0.62 18.71 16 8 O -0.57 -23.08 12.02 19.12 0.23 -22.85 16 9 C -0.22 -5.72 9.04 22.48 0.20 -5.52 16 10 C 0.00 0.11 9.95 22.50 0.22 0.33 16 11 C -0.02 -0.57 5.30 23.03 0.12 -0.45 16 12 C -0.19 -4.59 10.90 22.71 0.25 -4.35 16 13 C -0.23 -5.65 10.87 22.06 0.24 -5.41 16 14 C -0.04 -1.31 12.06 67.11 0.81 -0.50 16 15 O -0.17 -6.20 7.86 17.50 0.14 -6.06 16 16 N -0.74 -34.11 4.37 -322.94 -1.41 -35.52 16 17 C -0.22 -13.06 10.41 84.03 0.87 -12.19 16 18 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 19 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 20 N -0.99 -64.74 13.97 21.65 0.30 -64.44 16 21 Si 0.95 43.49 27.73 68.60 1.90 45.39 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.22 -8.33 4.90 99.48 0.49 -7.84 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.10 2.58 8.07 -2.39 -0.02 2.57 16 29 H 0.08 2.69 7.42 -2.39 -0.02 2.67 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.86 3.94 -2.38 -0.01 1.86 16 32 H 0.08 1.88 6.19 -2.39 -0.01 1.86 16 33 H 0.17 3.16 6.22 -2.91 -0.02 3.14 16 34 H 0.20 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.21 5.04 8.06 -2.91 -0.02 5.02 16 38 H 0.37 15.41 3.49 -92.71 -0.32 15.09 16 39 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -81.61 321.07 5.64 -75.97 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.51 Total: 32.94 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 6.31 Total: -3.95 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -3.45 Total: -121.44 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: 0.37 Total: -28.91 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.90 Total: 45.39 kcal Total: -81.61 5.64 -75.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571374953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.715 kcal (2) G-P(sol) polarization free energy of solvation -81.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds