Wall clock time and date at job start Tue Mar 31 2020 00:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47035 * 2 1 4 4 C 1.53000 * 109.47364 * 120.00215 * 2 1 3 5 5 N 1.46504 * 109.46913 * 174.99684 * 4 2 1 6 6 C 1.46496 * 119.99884 * 269.99793 * 5 4 2 7 7 C 1.34777 * 119.99858 * 90.00448 * 5 4 2 8 8 O 1.21783 * 120.00071 * 359.97438 * 7 5 4 9 9 C 1.41552 * 119.99977 * 179.97438 * 7 5 4 10 10 C 1.35629 * 119.99787 * 179.97438 * 9 7 5 11 11 C 1.41605 * 119.99687 * 180.27593 * 10 9 7 12 12 C 1.37947 * 126.10187 * 179.72394 * 11 10 9 13 13 C 1.40319 * 106.52797 * 180.02562 * 12 11 10 14 14 C 1.35149 * 107.20527 * 0.02562 * 13 12 11 15 15 O 1.34026 * 109.03414 * 359.73467 * 14 13 12 16 16 N 1.46506 * 109.46623 * 240.00506 * 2 1 3 17 17 C 1.36934 * 120.00016 * 85.00069 * 16 2 1 18 18 H 1.07992 * 120.00172 * 359.97438 * 17 16 2 19 19 C 1.38811 * 119.99643 * 179.97438 * 17 16 2 20 20 N 1.31624 * 120.00336 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99902 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46836 * 60.00131 * 21 19 17 23 23 H 1.48497 * 109.46946 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47158 * 299.99844 * 21 19 17 25 25 H 1.09004 * 109.46546 * 300.00081 * 1 2 3 26 26 H 1.09001 * 109.47164 * 59.99307 * 1 2 3 27 27 H 1.08992 * 109.46994 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46783 * 54.99835 * 4 2 1 29 29 H 1.08992 * 109.46865 * 294.99686 * 4 2 1 30 30 H 1.09001 * 109.47420 * 269.99757 * 6 5 4 31 31 H 1.09002 * 109.47392 * 30.00809 * 6 5 4 32 32 H 1.09001 * 109.46582 * 150.00192 * 6 5 4 33 33 H 1.07991 * 119.99783 * 359.97438 * 9 7 5 34 34 H 1.08002 * 119.99902 * 359.97438 * 10 9 7 35 35 H 1.07996 * 126.73777 * 359.97438 * 12 11 10 36 36 H 1.08001 * 126.39700 * 179.97438 * 13 12 11 37 37 H 1.08003 * 125.48251 * 180.02562 * 14 13 12 38 38 H 0.97003 * 119.99529 * 264.99404 * 16 2 1 39 39 H 0.96993 * 120.00006 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5002 -0.8264 1.1904 6 6 4.1258 -1.9920 0.5610 7 6 4.2677 0.1491 1.7154 8 8 3.7476 1.1182 2.2383 9 6 5.6784 0.0473 1.6591 10 6 6.4508 1.0293 2.1870 11 6 7.8620 0.9302 2.1255 12 6 8.7637 1.8527 2.6143 13 6 10.0427 1.3474 2.3352 14 6 9.8760 0.1652 1.7018 15 8 8.5648 -0.0855 1.5820 16 7 2.0183 -0.6906 -1.1963 17 6 2.1490 -0.0073 -2.3758 18 1 1.8918 1.0404 -2.4243 19 6 2.6121 -0.6616 -3.5091 20 7 2.9260 -1.9385 -3.4499 21 14 2.7898 0.2702 -5.1184 22 1 3.7443 1.3933 -4.9372 23 1 3.2999 -0.6479 -6.1682 24 1 1.4671 0.8060 -5.5288 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7198 1.2950 29 1 1.7518 -0.1584 2.1368 30 1 4.2824 -2.7688 1.3094 31 1 3.4757 -2.3722 -0.2270 32 1 5.0851 -1.7020 0.1322 33 1 6.1397 -0.8123 1.1958 34 1 5.9894 1.8890 2.6500 35 1 8.5310 2.7818 3.1131 36 1 10.9844 1.8161 2.5801 37 1 10.6714 -0.4766 1.3528 38 1 2.2490 -1.6317 -1.1528 39 1 3.2500 -2.3954 -4.2417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571374956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:17 Heat of formation + Delta-G solvation = 18.926288 kcal Electronic energy + Delta-G solvation = -21375.232353 eV Core-core repulsion = 18093.008805 eV Total energy + Delta-G solvation = -3282.223547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.64671 -39.71315 -36.41707 -34.19091 -34.06901 -33.15036 -32.01073 -29.30804 -28.66345 -26.79214 -25.87569 -23.88709 -23.05864 -21.96410 -20.61411 -19.83783 -18.39405 -17.72631 -17.25499 -16.64290 -16.18355 -15.81819 -15.11333 -14.78871 -14.40919 -14.01120 -13.56983 -13.33938 -13.13630 -12.93278 -12.57095 -12.53633 -12.24380 -12.11716 -12.00834 -11.64420 -11.27309 -11.21803 -10.82004 -10.70930 -10.61377 -10.33823 -10.06741 -10.03104 -9.65012 -9.49691 -8.90078 -8.21616 -7.91336 -6.92504 -5.76129 -3.02568 0.47325 2.04783 2.65022 2.84533 3.45094 3.49439 3.49513 3.51185 3.76062 4.61068 4.61571 4.78073 4.82136 5.14752 5.24662 5.51649 5.54182 5.58038 5.61292 5.63392 5.71585 5.90960 5.91641 5.95255 6.01341 6.12280 6.25654 6.30752 6.34253 6.37667 6.42934 6.73810 6.86526 6.91860 6.95616 7.20340 7.72899 7.82656 8.44039 8.56280 9.54880 10.11132 10.46970 11.47005 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.004715 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.359776 B = 5937.652898 C = 7075.825539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.052 0.948 4 C 0.110 3.890 5 N -0.588 5.588 6 C 0.079 3.921 7 C 0.547 3.453 8 O -0.558 6.558 9 C -0.186 4.186 10 C -0.011 4.011 11 C 0.004 3.996 12 C -0.175 4.175 13 C -0.219 4.219 14 C -0.026 4.026 15 O -0.164 6.164 16 N -0.720 5.720 17 C -0.231 4.231 18 H 0.068 0.932 19 C -0.013 4.013 20 N -0.937 5.937 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.287 1.287 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.205 0.795 38 H 0.381 0.619 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.827 1.390 13.114 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.070 0.930 4 C -0.014 4.014 5 N -0.318 5.318 6 C -0.064 4.064 7 C 0.338 3.662 8 O -0.440 6.440 9 C -0.206 4.206 10 C -0.031 4.031 11 C -0.046 4.046 12 C -0.194 4.194 13 C -0.238 4.238 14 C -0.095 4.095 15 O -0.060 6.060 16 N -0.364 5.364 17 C -0.362 4.362 18 H 0.086 0.914 19 C -0.209 4.209 20 N -0.586 5.586 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.214 1.214 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.151 0.849 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.221 0.779 38 H 0.216 0.784 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.405 1.705 13.087 16.806 hybrid contribution 0.421 0.180 -1.156 1.243 sum 10.826 1.885 11.931 16.221 Atomic orbital electron populations 1.22368 0.98804 1.00814 1.00267 1.20668 0.91951 0.96341 0.86695 0.93023 1.21841 0.78875 1.01146 0.99491 1.47524 1.06855 1.21189 1.56214 1.21948 0.99955 0.86864 0.97646 1.16907 0.87515 0.82736 0.79022 1.90780 1.75673 1.31148 1.46365 1.22350 0.94398 1.01165 1.02691 1.20628 0.87110 0.99114 0.96235 1.19958 0.92574 0.88988 1.03055 1.22315 0.91932 1.00966 1.04169 1.21752 0.98976 0.97471 1.05583 1.24285 0.83092 0.99138 1.03009 1.84130 1.18106 1.41481 1.62236 1.42473 1.78201 1.10401 1.05281 1.19201 1.35881 0.93823 0.87310 0.91444 1.24652 1.02411 0.95976 0.97843 1.69614 1.51478 1.08591 1.28930 0.86305 0.77767 0.78630 0.83746 1.21440 1.21751 1.21368 0.94285 0.92587 0.93485 0.90981 0.90082 0.93544 0.88939 0.91107 0.84895 0.82362 0.82750 0.83112 0.77865 0.78367 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.49 37.16 0.35 -2.65 16 2 C 0.15 3.20 3.20 -67.93 -0.22 2.98 16 3 H 0.05 1.20 8.08 -51.93 -0.42 0.78 16 4 C 0.11 1.94 5.05 -4.04 -0.02 1.92 16 5 N -0.59 -10.46 2.73 -185.03 -0.50 -10.97 16 6 C 0.08 1.28 9.74 59.84 0.58 1.86 16 7 C 0.55 10.01 7.44 -15.00 -0.11 9.90 16 8 O -0.56 -11.49 15.69 5.11 0.08 -11.40 16 9 C -0.19 -2.89 8.68 -39.25 -0.34 -3.23 16 10 C -0.01 -0.15 9.39 -39.23 -0.37 -0.52 16 11 C 0.00 0.05 6.84 -38.41 -0.26 -0.22 16 12 C -0.17 -1.89 10.90 -38.91 -0.42 -2.31 16 13 C -0.22 -2.04 10.87 -39.90 -0.43 -2.47 16 14 C -0.03 -0.25 12.06 29.63 0.36 0.11 16 15 O -0.16 -2.09 10.18 4.68 0.05 -2.04 16 16 N -0.72 -17.69 4.57 -53.42 -0.24 -17.93 16 17 C -0.23 -6.41 9.93 -15.06 -0.15 -6.56 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.94 -27.37 13.06 55.49 0.72 -26.65 16 21 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.14 8.07 -51.93 -0.42 0.73 16 29 H 0.08 1.38 7.42 -51.93 -0.39 1.00 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.73 5.62 -51.93 -0.29 1.44 16 32 H 0.07 1.14 6.08 -51.93 -0.32 0.82 16 33 H 0.13 1.93 5.75 -52.49 -0.30 1.63 16 34 H 0.16 2.10 7.46 -52.49 -0.39 1.71 16 35 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.20 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.38 9.54 5.33 -40.82 -0.22 9.32 16 39 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -32.66 332.87 -6.28 -38.95 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.25 Total: 9.15 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.13 Total: -1.65 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.02 Total: -55.55 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.13 Total: -13.45 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.66 -6.28 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571374956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.873 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds