Wall clock time and date at job start Tue Mar 31 2020 00:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47035 * 2 1 4 4 C 1.53000 * 109.47364 * 120.00215 * 2 1 3 5 5 N 1.46504 * 109.46913 * 174.99684 * 4 2 1 6 6 C 1.46496 * 119.99884 * 269.99793 * 5 4 2 7 7 C 1.34777 * 119.99858 * 90.00448 * 5 4 2 8 8 O 1.21783 * 120.00071 * 359.97438 * 7 5 4 9 9 C 1.41552 * 119.99977 * 179.97438 * 7 5 4 10 10 C 1.35629 * 119.99787 * 179.97438 * 9 7 5 11 11 C 1.41605 * 119.99687 * 180.27593 * 10 9 7 12 12 C 1.37947 * 126.10187 * 179.72394 * 11 10 9 13 13 C 1.40319 * 106.52797 * 180.02562 * 12 11 10 14 14 C 1.35149 * 107.20527 * 0.02562 * 13 12 11 15 15 O 1.34026 * 109.03414 * 359.73467 * 14 13 12 16 16 N 1.46506 * 109.46623 * 240.00506 * 2 1 3 17 17 C 1.36934 * 120.00016 * 85.00069 * 16 2 1 18 18 H 1.07992 * 120.00172 * 359.97438 * 17 16 2 19 19 C 1.38811 * 119.99643 * 179.97438 * 17 16 2 20 20 N 1.31624 * 120.00336 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99902 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46836 * 60.00131 * 21 19 17 23 23 H 1.48497 * 109.46946 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47158 * 299.99844 * 21 19 17 25 25 H 1.09004 * 109.46546 * 300.00081 * 1 2 3 26 26 H 1.09001 * 109.47164 * 59.99307 * 1 2 3 27 27 H 1.08992 * 109.46994 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46783 * 54.99835 * 4 2 1 29 29 H 1.08992 * 109.46865 * 294.99686 * 4 2 1 30 30 H 1.09001 * 109.47420 * 269.99757 * 6 5 4 31 31 H 1.09002 * 109.47392 * 30.00809 * 6 5 4 32 32 H 1.09001 * 109.46582 * 150.00192 * 6 5 4 33 33 H 1.07991 * 119.99783 * 359.97438 * 9 7 5 34 34 H 1.08002 * 119.99902 * 359.97438 * 10 9 7 35 35 H 1.07996 * 126.73777 * 359.97438 * 12 11 10 36 36 H 1.08001 * 126.39700 * 179.97438 * 13 12 11 37 37 H 1.08003 * 125.48251 * 180.02562 * 14 13 12 38 38 H 0.97003 * 119.99529 * 264.99404 * 16 2 1 39 39 H 0.96993 * 120.00006 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5002 -0.8264 1.1904 6 6 4.1258 -1.9920 0.5610 7 6 4.2677 0.1491 1.7154 8 8 3.7476 1.1182 2.2383 9 6 5.6784 0.0473 1.6591 10 6 6.4508 1.0293 2.1870 11 6 7.8620 0.9302 2.1255 12 6 8.7637 1.8527 2.6143 13 6 10.0427 1.3474 2.3352 14 6 9.8760 0.1652 1.7018 15 8 8.5648 -0.0855 1.5820 16 7 2.0183 -0.6906 -1.1963 17 6 2.1490 -0.0073 -2.3758 18 1 1.8918 1.0404 -2.4243 19 6 2.6121 -0.6616 -3.5091 20 7 2.9260 -1.9385 -3.4499 21 14 2.7898 0.2702 -5.1184 22 1 3.7443 1.3933 -4.9372 23 1 3.2999 -0.6479 -6.1682 24 1 1.4671 0.8060 -5.5288 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7198 1.2950 29 1 1.7518 -0.1584 2.1368 30 1 4.2824 -2.7688 1.3094 31 1 3.4757 -2.3722 -0.2270 32 1 5.0851 -1.7020 0.1322 33 1 6.1397 -0.8123 1.1958 34 1 5.9894 1.8890 2.6500 35 1 8.5310 2.7818 3.1131 36 1 10.9844 1.8161 2.5801 37 1 10.6714 -0.4766 1.3528 38 1 2.2490 -1.6317 -1.1528 39 1 3.2500 -2.3954 -4.2417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571374956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:16 Heat of formation + Delta-G solvation = -1.430600 kcal Electronic energy + Delta-G solvation = -21376.115093 eV Core-core repulsion = 18093.008805 eV Total energy + Delta-G solvation = -3283.106288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.49714 -41.09681 -38.02224 -35.80571 -35.22183 -34.05354 -33.84514 -30.85498 -30.02104 -28.17834 -27.18451 -25.75971 -24.35229 -22.80635 -21.92383 -21.14743 -19.67924 -19.27545 -18.80212 -17.76005 -17.15175 -17.07273 -16.75413 -16.35495 -15.74563 -15.53019 -15.21340 -15.00826 -14.03287 -13.90041 -13.84028 -13.70071 -13.66603 -13.56909 -13.29795 -13.09945 -12.96465 -12.78417 -12.58809 -12.49504 -12.21838 -11.87875 -11.68437 -11.61641 -11.03608 -10.87965 -10.84083 -9.59276 -8.98847 -8.88600 -7.92422 -5.17896 -0.57725 1.17168 1.45644 1.46950 1.53029 1.72283 2.04056 2.17522 2.47753 2.56794 3.41119 3.62281 3.87548 3.97278 4.04179 4.06761 4.13280 4.24004 4.35378 4.42857 4.62433 4.67943 4.68813 4.72766 4.87854 4.88713 4.96707 5.01266 5.09305 5.17625 5.20473 5.27112 5.41872 5.52307 5.55790 5.70810 6.10183 6.30519 6.46337 7.18541 7.38048 8.11300 8.39770 9.30140 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.004715 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.359776 B = 5937.652898 C = 7075.825539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.152 3.848 3 H 0.021 0.979 4 C 0.116 3.884 5 N -0.595 5.595 6 C 0.085 3.915 7 C 0.543 3.457 8 O -0.593 6.593 9 C -0.226 4.226 10 C 0.021 3.979 11 C -0.045 4.045 12 C -0.156 4.156 13 C -0.228 4.228 14 C -0.014 4.014 15 O -0.186 6.186 16 N -0.725 5.725 17 C -0.238 4.238 18 H 0.060 0.940 19 C -0.064 4.064 20 N -0.960 5.960 21 Si 0.961 3.039 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.138 0.862 34 H 0.160 0.840 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.243 0.757 38 H 0.378 0.622 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.545 1.657 13.887 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.039 0.961 4 C -0.008 4.008 5 N -0.324 5.324 6 C -0.057 4.057 7 C 0.337 3.663 8 O -0.477 6.477 9 C -0.246 4.246 10 C 0.001 3.999 11 C -0.094 4.094 12 C -0.175 4.175 13 C -0.247 4.247 14 C -0.083 4.083 15 O -0.082 6.082 16 N -0.369 5.369 17 C -0.370 4.370 18 H 0.078 0.922 19 C -0.256 4.256 20 N -0.611 5.611 21 Si 0.791 3.209 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.208 1.208 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.156 0.844 34 H 0.177 0.823 35 H 0.192 0.808 36 H 0.199 0.801 37 H 0.259 0.741 38 H 0.213 0.787 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.106 1.975 13.880 18.523 hybrid contribution 0.103 0.192 -1.301 1.319 sum 12.208 2.167 12.579 17.663 Atomic orbital electron populations 1.22208 0.96684 1.01538 1.00761 1.20794 0.93392 0.94742 0.86831 0.96090 1.21775 0.79175 1.01965 0.97871 1.47634 1.06917 1.21611 1.56197 1.21924 0.98895 0.87102 0.97829 1.17301 0.88559 0.82143 0.78308 1.90739 1.76418 1.32348 1.48239 1.22143 0.93003 1.02943 1.06520 1.20737 0.88026 0.97893 0.93254 1.19944 0.92368 0.90635 1.06427 1.22779 0.92306 1.00700 1.01685 1.22190 0.99537 0.97505 1.05438 1.25248 0.82595 0.99521 1.00897 1.84124 1.19529 1.41846 1.62668 1.42547 1.78489 1.10272 1.05555 1.19424 1.35155 0.93714 0.88675 0.92220 1.25296 1.02959 0.96857 1.00535 1.69739 1.52457 1.09581 1.29300 0.85400 0.77680 0.77426 0.80373 1.21372 1.21704 1.20829 0.91317 0.94532 0.92584 0.88833 0.89334 0.90157 0.91440 0.91465 0.84415 0.82258 0.80796 0.80079 0.74086 0.78685 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 9.49 71.98 0.68 -4.85 16 2 C 0.15 6.39 3.20 44.99 0.14 6.53 16 3 H 0.02 1.01 8.08 -2.38 -0.02 0.99 16 4 C 0.12 4.06 5.05 86.38 0.44 4.50 16 5 N -0.59 -21.42 2.73 -857.49 -2.34 -23.76 16 6 C 0.09 2.79 9.74 127.77 1.25 4.03 16 7 C 0.54 20.42 7.44 85.06 0.63 21.06 16 8 O -0.59 -25.10 15.69 -4.61 -0.07 -25.17 16 9 C -0.23 -7.22 8.68 22.48 0.20 -7.03 16 10 C 0.02 0.59 9.39 22.50 0.21 0.80 16 11 C -0.05 -1.12 6.84 23.03 0.16 -0.97 16 12 C -0.16 -2.99 10.90 22.71 0.25 -2.74 16 13 C -0.23 -3.47 10.87 22.06 0.24 -3.23 16 14 C -0.01 -0.22 12.06 67.11 0.81 0.59 16 15 O -0.19 -4.48 10.18 -6.18 -0.06 -4.54 16 16 N -0.73 -36.30 4.57 -322.93 -1.47 -37.77 16 17 C -0.24 -13.43 9.93 84.03 0.83 -12.60 16 18 H 0.06 3.40 7.83 -2.91 -0.02 3.37 16 19 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 20 N -0.96 -56.73 13.06 21.65 0.28 -56.45 16 21 Si 0.96 46.76 29.55 68.60 2.03 48.79 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 25 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 2.87 8.07 -2.39 -0.02 2.85 16 29 H 0.09 2.99 7.42 -2.39 -0.02 2.97 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 2.57 5.62 -2.39 -0.01 2.55 16 32 H 0.07 2.22 6.08 -2.39 -0.01 2.20 16 33 H 0.14 4.14 5.75 -2.91 -0.02 4.12 16 34 H 0.16 4.30 7.46 -2.91 -0.02 4.28 16 35 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.24 1.63 8.06 -2.91 -0.02 1.60 16 38 H 0.38 19.30 5.33 -92.71 -0.49 18.80 16 39 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -71.36 332.87 5.23 -66.13 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.56 Total: 29.84 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 6.30 Total: 2.93 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -3.53 Total: -117.98 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.14 Total: -29.71 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -71.36 5.23 -66.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571374956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.703 kcal (2) G-P(sol) polarization free energy of solvation -71.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds