Wall clock time and date at job start Tue Mar 31 2020 00:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47193 * 2 1 4 4 C 1.53003 * 109.47313 * 120.00379 * 2 1 3 5 5 C 1.53002 * 109.46903 * 184.99913 * 4 2 1 6 6 N 1.46504 * 109.46758 * 179.97438 * 5 4 2 7 7 C 1.34770 * 119.99810 * 179.97438 * 6 5 4 8 8 O 1.21594 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.47532 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.39709 * 120.19087 * 0.26227 * 9 7 6 11 11 C 1.37792 * 119.90977 * 180.25438 * 10 9 7 12 12 C 1.38552 * 120.29922 * 359.76184 * 11 10 9 13 13 C 1.38065 * 120.38821 * 359.97438 * 12 11 10 14 14 C 1.38702 * 120.08290 * 0.02562 * 13 12 11 15 15 O 1.35655 * 120.14742 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.46992 * 239.99914 * 2 1 3 17 17 C 1.36936 * 119.99695 * 84.99897 * 16 2 1 18 18 H 1.07999 * 120.00310 * 359.97438 * 17 16 2 19 19 C 1.38817 * 119.99899 * 180.02562 * 17 16 2 20 20 N 1.31617 * 120.00160 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00122 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47294 * 59.99311 * 21 19 17 23 23 H 1.48492 * 109.47395 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46808 * 299.99658 * 21 19 17 25 25 H 1.08998 * 109.46769 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46734 * 299.99440 * 1 2 3 27 27 H 1.08994 * 109.47492 * 59.99974 * 1 2 3 28 28 H 1.09000 * 109.47491 * 64.99449 * 4 2 1 29 29 H 1.08998 * 109.46450 * 304.99761 * 4 2 1 30 30 H 1.08996 * 109.47007 * 60.00115 * 5 4 2 31 31 H 1.08999 * 109.47014 * 299.99559 * 5 4 2 32 32 H 0.96997 * 120.00139 * 0.02562 * 6 5 4 33 33 H 1.08001 * 120.04881 * 0.02562 * 10 9 7 34 34 H 1.07997 * 119.85285 * 179.79026 * 11 10 9 35 35 H 1.07994 * 119.80867 * 180.02562 * 12 11 10 36 36 H 1.07996 * 119.95511 * 180.02562 * 13 12 11 37 37 H 0.96700 * 114.00230 * 90.00003 * 15 14 13 38 38 H 0.96993 * 120.00186 * 265.00052 * 16 2 1 39 39 H 0.96995 * 120.00369 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 7 4.0532 -1.3035 2.5100 7 6 5.3741 -1.3397 2.7752 8 8 6.1605 -0.7990 2.0216 9 6 5.8660 -2.0351 3.9797 10 6 4.9664 -2.6623 4.8454 11 6 5.4317 -3.3058 5.9715 12 6 6.7891 -3.3382 6.2475 13 6 7.6894 -2.7271 5.3977 14 6 7.2386 -2.0749 4.2596 15 8 8.1219 -1.4737 3.4239 16 7 2.0183 -0.6906 -1.1962 17 6 2.1491 -0.0075 -2.3757 18 1 1.8918 1.0403 -2.4244 19 6 2.6112 -0.6620 -3.5093 20 7 2.9243 -1.9390 -3.4503 21 14 2.7903 0.2700 -5.1183 22 1 3.7463 1.3919 -4.9368 23 1 3.2991 -0.6483 -6.1684 24 1 1.4682 0.8078 -5.5285 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.7517 -1.7716 1.2056 29 1 1.6055 -0.2618 2.1369 30 1 3.8532 0.4369 1.3573 31 1 3.9995 -1.0729 0.4258 32 1 3.4260 -1.7351 3.1109 33 1 3.9075 -2.6398 4.6342 34 1 4.7352 -3.7874 6.6419 35 1 7.1451 -3.8450 7.1322 36 1 8.7459 -2.7570 5.6193 37 1 8.4537 -2.0497 2.7216 38 1 2.2490 -1.6317 -1.1527 39 1 3.2476 -2.3963 -4.2423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662892781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:08 Heat of formation + Delta-G solvation = -47.691334 kcal Electronic energy + Delta-G solvation = -20919.341120 eV Core-core repulsion = 17634.228816 eV Total energy + Delta-G solvation = -3285.112304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.45323 -38.56656 -36.84284 -36.47802 -34.30843 -32.36246 -31.50387 -30.02626 -29.11712 -27.99308 -24.44552 -23.64763 -22.91174 -22.08664 -20.59557 -19.72406 -18.62367 -17.61841 -17.13353 -16.22477 -15.80832 -15.34705 -15.06722 -15.00515 -14.64100 -14.28534 -13.89165 -13.47381 -13.45391 -12.99676 -12.51656 -12.46933 -12.38689 -12.01945 -11.94596 -11.52508 -11.05628 -10.89886 -10.83866 -10.71258 -10.61434 -10.27671 -9.99398 -9.62416 -9.56491 -9.32399 -8.96124 -8.88116 -8.71827 -6.92739 -5.72372 -3.01025 0.60975 0.97668 2.86563 3.30497 3.47936 3.52489 3.53139 3.61569 4.05653 4.51786 4.58115 4.63503 4.71478 5.05019 5.08296 5.30137 5.41696 5.47427 5.55782 5.59049 5.69990 5.90042 5.91053 6.04059 6.08435 6.09843 6.20128 6.36966 6.41357 6.44399 6.50297 6.70068 6.73770 6.88380 7.07952 7.58582 7.67333 7.74178 8.40631 8.46026 9.57328 10.13930 10.48609 11.50254 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.003544 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.088790 B = 7899.875332 C = 8702.635931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.725 5.725 7 C 0.550 3.450 8 O -0.518 6.518 9 C -0.160 4.160 10 C -0.072 4.072 11 C -0.140 4.140 12 C -0.082 4.082 13 C -0.158 4.158 14 C 0.167 3.833 15 O -0.478 6.478 16 N -0.723 5.723 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 H 0.045 0.955 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.393 0.607 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.397 0.603 38 H 0.383 0.617 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 -4.383 21.608 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C 0.000 4.000 6 N -0.377 5.377 7 C 0.336 3.664 8 O -0.394 6.394 9 C -0.164 4.164 10 C -0.091 4.091 11 C -0.158 4.158 12 C -0.101 4.101 13 C -0.177 4.177 14 C 0.120 3.880 15 O -0.290 6.290 16 N -0.365 5.365 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.214 1.214 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.228 0.772 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.256 0.744 38 H 0.217 0.783 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.606 -3.361 21.216 21.969 hybrid contribution -0.156 -0.494 -0.925 1.061 sum 4.450 -3.856 20.290 21.127 Atomic orbital electron populations 1.22425 0.99143 1.00811 0.99963 1.20152 0.91863 0.95599 0.86001 0.93268 1.22065 0.93905 1.01777 0.99375 1.21470 0.94372 0.97222 0.86911 1.46045 1.06923 1.57155 1.27614 1.18034 0.82686 0.80649 0.85055 1.90843 1.55071 1.44757 1.48740 1.20572 0.94244 1.03748 0.97844 1.21282 0.99258 0.95035 0.93538 1.21101 0.95865 1.01014 0.97803 1.21211 0.93079 0.97191 0.98591 1.21470 1.00920 0.99493 0.95798 1.18543 0.87453 0.90987 0.90976 1.84737 1.59882 1.40394 1.43941 1.42443 1.78114 1.10641 1.05351 1.19182 1.36599 0.93828 0.87341 0.91263 1.24720 1.02148 0.95952 0.98036 1.69641 1.50901 1.08671 1.28952 0.86290 0.77720 0.78676 0.83642 1.21236 1.21760 1.21373 0.93540 0.94581 0.92712 0.91614 0.91937 0.91733 0.89621 0.77216 0.85189 0.85189 0.85254 0.84807 0.74438 0.78300 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.49 37.16 0.35 -2.50 16 2 C 0.17 3.36 2.89 -67.93 -0.20 3.16 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 5 C 0.12 2.09 5.56 -4.04 -0.02 2.07 16 6 N -0.73 -10.28 5.51 -61.35 -0.34 -10.62 16 7 C 0.55 8.85 7.76 -12.47 -0.10 8.75 16 8 O -0.52 -10.53 15.16 -16.60 -0.25 -10.78 16 9 C -0.16 -2.05 5.89 -104.85 -0.62 -2.67 16 10 C -0.07 -0.68 9.54 -39.20 -0.37 -1.05 16 11 C -0.14 -1.07 10.02 -39.63 -0.40 -1.46 16 12 C -0.08 -0.62 10.03 -39.53 -0.40 -1.02 16 13 C -0.16 -1.46 9.98 -39.47 -0.39 -1.86 16 14 C 0.17 2.05 6.72 -38.70 -0.26 1.79 16 15 O -0.48 -6.40 11.58 -40.54 -0.47 -6.87 16 16 N -0.72 -17.84 4.57 -53.42 -0.24 -18.08 16 17 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 21 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.81 7.75 -51.93 -0.40 1.40 16 32 H 0.39 4.17 6.50 -40.82 -0.27 3.91 16 33 H 0.13 0.92 6.40 -52.49 -0.34 0.59 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.40 3.90 9.06 45.56 0.41 4.32 16 38 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 39 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 333.68 15.07 5.03 5.03 Total: -1.00 -34.82 333.68 -8.03 -42.85 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -4.68 Total: 12.59 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.78 Total: -4.19 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.14 Total: -56.38 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.72 Total: -17.64 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.82 -8.03 -42.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662892781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.840 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds