Wall clock time and date at job start Tue Mar 31 2020 00:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47193 * 2 1 4 4 C 1.53003 * 109.47313 * 120.00379 * 2 1 3 5 5 C 1.53002 * 109.46903 * 184.99913 * 4 2 1 6 6 N 1.46504 * 109.46758 * 179.97438 * 5 4 2 7 7 C 1.34770 * 119.99810 * 179.97438 * 6 5 4 8 8 O 1.21594 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.47532 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.39709 * 120.19087 * 0.26227 * 9 7 6 11 11 C 1.37792 * 119.90977 * 180.25438 * 10 9 7 12 12 C 1.38552 * 120.29922 * 359.76184 * 11 10 9 13 13 C 1.38065 * 120.38821 * 359.97438 * 12 11 10 14 14 C 1.38702 * 120.08290 * 0.02562 * 13 12 11 15 15 O 1.35655 * 120.14742 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.46992 * 239.99914 * 2 1 3 17 17 C 1.36936 * 119.99695 * 84.99897 * 16 2 1 18 18 H 1.07999 * 120.00310 * 359.97438 * 17 16 2 19 19 C 1.38817 * 119.99899 * 180.02562 * 17 16 2 20 20 N 1.31617 * 120.00160 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00122 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47294 * 59.99311 * 21 19 17 23 23 H 1.48492 * 109.47395 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46808 * 299.99658 * 21 19 17 25 25 H 1.08998 * 109.46769 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46734 * 299.99440 * 1 2 3 27 27 H 1.08994 * 109.47492 * 59.99974 * 1 2 3 28 28 H 1.09000 * 109.47491 * 64.99449 * 4 2 1 29 29 H 1.08998 * 109.46450 * 304.99761 * 4 2 1 30 30 H 1.08996 * 109.47007 * 60.00115 * 5 4 2 31 31 H 1.08999 * 109.47014 * 299.99559 * 5 4 2 32 32 H 0.96997 * 120.00139 * 0.02562 * 6 5 4 33 33 H 1.08001 * 120.04881 * 0.02562 * 10 9 7 34 34 H 1.07997 * 119.85285 * 179.79026 * 11 10 9 35 35 H 1.07994 * 119.80867 * 180.02562 * 12 11 10 36 36 H 1.07996 * 119.95511 * 180.02562 * 13 12 11 37 37 H 0.96700 * 114.00230 * 90.00003 * 15 14 13 38 38 H 0.96993 * 120.00186 * 265.00052 * 16 2 1 39 39 H 0.96995 * 120.00369 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 7 4.0532 -1.3035 2.5100 7 6 5.3741 -1.3397 2.7752 8 8 6.1605 -0.7990 2.0216 9 6 5.8660 -2.0351 3.9797 10 6 4.9664 -2.6623 4.8454 11 6 5.4317 -3.3058 5.9715 12 6 6.7891 -3.3382 6.2475 13 6 7.6894 -2.7271 5.3977 14 6 7.2386 -2.0749 4.2596 15 8 8.1219 -1.4737 3.4239 16 7 2.0183 -0.6906 -1.1962 17 6 2.1491 -0.0075 -2.3757 18 1 1.8918 1.0403 -2.4244 19 6 2.6112 -0.6620 -3.5093 20 7 2.9243 -1.9390 -3.4503 21 14 2.7903 0.2700 -5.1183 22 1 3.7463 1.3919 -4.9368 23 1 3.2991 -0.6483 -6.1684 24 1 1.4682 0.8078 -5.5285 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.7517 -1.7716 1.2056 29 1 1.6055 -0.2618 2.1369 30 1 3.8532 0.4369 1.3573 31 1 3.9995 -1.0729 0.4258 32 1 3.4260 -1.7351 3.1109 33 1 3.9075 -2.6398 4.6342 34 1 4.7352 -3.7874 6.6419 35 1 7.1451 -3.8450 7.1322 36 1 8.7459 -2.7570 5.6193 37 1 8.4537 -2.0497 2.7216 38 1 2.2490 -1.6317 -1.1527 39 1 3.2476 -2.3963 -4.2423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662892781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:07 Heat of formation + Delta-G solvation = -73.321082 kcal Electronic energy + Delta-G solvation = -20920.452509 eV Core-core repulsion = 17634.228816 eV Total energy + Delta-G solvation = -3286.223693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.43798 -39.65714 -38.09639 -37.65396 -35.81573 -34.18706 -32.50446 -30.92230 -30.71156 -29.42861 -25.96084 -25.16465 -23.91630 -23.12072 -21.87516 -21.15207 -19.57905 -19.24308 -18.49909 -17.29273 -16.95828 -16.66995 -16.26631 -16.05727 -15.93515 -15.60018 -15.31918 -15.09799 -14.53602 -14.45733 -14.09570 -13.56196 -13.28568 -13.25564 -13.11995 -12.79569 -12.66230 -12.61719 -12.32290 -12.24539 -12.13058 -11.77336 -11.61448 -11.59062 -10.95356 -10.80067 -10.24411 -9.95534 -9.65279 -8.97990 -7.92677 -5.19479 -0.20837 0.28275 1.45431 1.48781 1.54089 1.86585 2.13319 2.57095 2.74794 3.27658 3.41292 3.68318 3.83756 3.91647 4.00582 4.12339 4.20781 4.33903 4.40786 4.44100 4.65822 4.72408 4.76570 4.87944 4.91604 5.01756 5.10342 5.19876 5.25259 5.34949 5.39526 5.42453 5.44499 5.53637 5.61750 5.81600 6.30281 6.54326 6.76593 7.23182 7.36229 8.14183 8.35606 9.30710 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.003544 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.088790 B = 7899.875332 C = 8702.635931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.164 3.836 3 H 0.041 0.959 4 C -0.115 4.115 5 C 0.134 3.866 6 N -0.709 5.709 7 C 0.543 3.457 8 O -0.575 6.575 9 C -0.191 4.191 10 C -0.070 4.070 11 C -0.133 4.133 12 C -0.069 4.069 13 C -0.162 4.162 14 C 0.138 3.862 15 O -0.503 6.503 16 N -0.735 5.735 17 C -0.235 4.235 18 H 0.073 0.927 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.967 3.033 22 H -0.283 1.283 23 H -0.297 1.297 24 H -0.276 1.276 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.414 0.586 33 H 0.153 0.847 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.150 0.850 37 H 0.404 0.596 38 H 0.372 0.628 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 -4.945 24.827 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.055 3.945 3 H 0.059 0.941 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.362 5.362 7 C 0.332 3.668 8 O -0.456 6.456 9 C -0.194 4.194 10 C -0.089 4.089 11 C -0.150 4.150 12 C -0.087 4.087 13 C -0.180 4.180 14 C 0.092 3.908 15 O -0.315 6.315 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.091 0.909 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.797 3.203 22 H -0.209 1.209 23 H -0.223 1.223 24 H -0.202 1.202 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.252 0.748 33 H 0.170 0.830 34 H 0.185 0.815 35 H 0.184 0.816 36 H 0.167 0.833 37 H 0.263 0.737 38 H 0.204 0.796 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.151 -3.909 24.501 25.010 hybrid contribution 0.279 -0.330 -1.753 1.806 sum 3.429 -4.239 22.748 23.392 Atomic orbital electron populations 1.22254 0.96952 1.01131 1.00892 1.20459 0.93266 0.95120 0.85639 0.94121 1.21922 0.92143 1.02247 0.99030 1.21112 0.95573 0.95967 0.86341 1.45802 1.06995 1.56608 1.26835 1.18715 0.82605 0.79924 0.85599 1.90802 1.56452 1.47391 1.50915 1.20453 0.95205 1.06052 0.97718 1.21572 0.99833 0.94095 0.93357 1.21563 0.96641 0.99678 0.97168 1.21713 0.92859 0.95394 0.98748 1.21691 1.02336 0.99091 0.94880 1.18959 0.87342 0.92419 0.92053 1.84692 1.60394 1.41771 1.44685 1.42643 1.78441 1.10240 1.06302 1.19569 1.34606 0.94083 0.88493 0.90895 1.25489 1.03241 0.96875 1.01343 1.69797 1.52845 1.10150 1.29295 0.85301 0.77933 0.77308 0.79799 1.20926 1.22306 1.20212 0.93497 0.90530 0.94880 0.90727 0.87569 0.93346 0.94512 0.74778 0.82981 0.81507 0.81573 0.83251 0.73697 0.79629 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.49 71.98 0.68 -4.32 16 2 C 0.16 6.18 2.89 44.99 0.13 6.31 16 3 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 4 C -0.12 -3.34 4.87 30.60 0.15 -3.19 16 5 C 0.13 4.68 5.56 86.38 0.48 5.16 16 6 N -0.71 -19.99 5.51 -466.27 -2.57 -22.55 16 7 C 0.54 18.14 7.76 86.70 0.67 18.81 16 8 O -0.58 -25.14 15.16 16.91 0.26 -24.88 16 9 C -0.19 -4.83 5.89 -20.01 -0.12 -4.95 16 10 C -0.07 -1.13 9.54 22.52 0.21 -0.91 16 11 C -0.13 -1.44 10.02 22.24 0.22 -1.22 16 12 C -0.07 -0.76 10.03 22.30 0.22 -0.54 16 13 C -0.16 -2.69 9.98 22.34 0.22 -2.47 16 14 C 0.14 3.44 6.72 22.84 0.15 3.59 16 15 O -0.50 -14.45 11.58 -68.78 -0.80 -15.25 16 16 N -0.74 -36.96 4.57 -322.92 -1.48 -38.43 16 17 C -0.24 -13.32 9.93 84.03 0.83 -12.48 16 18 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 19 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 20 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 21 Si 0.97 47.78 29.55 68.60 2.03 49.81 16 22 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.65 7.75 -2.39 -0.02 1.63 16 32 H 0.41 7.93 6.50 -92.71 -0.60 7.32 16 33 H 0.15 1.61 6.40 -2.91 -0.02 1.59 16 34 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 35 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 36 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.40 9.07 9.06 -74.06 -0.67 8.39 16 38 H 0.37 20.14 7.80 -92.71 -0.72 19.42 16 39 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -80.55 333.68 1.15 -79.40 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -0.91 Total: 32.85 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 4.34 Total: -0.32 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -3.76 Total: -121.61 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.54 Total: -40.13 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -80.55 1.15 -79.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662892781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.079 kcal (2) G-P(sol) polarization free energy of solvation -80.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds