Wall clock time and date at job start Tue Mar 31 2020 00:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47118 * 2 1 4 4 C 1.52999 * 109.46908 * 239.99850 * 2 1 3 5 5 N 1.46499 * 109.47403 * 185.00167 * 4 2 1 6 6 C 1.46499 * 119.99663 * 270.00408 * 5 4 2 7 7 C 1.36929 * 120.00036 * 89.99479 * 5 4 2 8 8 H 1.08001 * 120.00096 * 22.32142 * 7 5 4 9 9 C 1.38813 * 119.99909 * 202.31670 * 7 5 4 10 10 N 1.31614 * 120.00264 * 11.40890 * 9 7 5 11 11 Si 1.86813 * 119.99848 * 191.40955 * 9 7 5 12 12 H 1.48492 * 109.47044 * 59.99986 * 11 9 7 13 13 H 1.48494 * 109.46674 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46639 * 300.00070 * 11 9 7 15 15 N 1.46495 * 109.47025 * 120.00061 * 2 1 3 16 16 C 1.34780 * 120.00167 * 274.99427 * 15 2 1 17 17 O 1.21588 * 119.99588 * 0.02562 * 16 15 2 18 18 C 1.47534 * 120.00097 * 180.02562 * 16 15 2 19 19 C 1.39700 * 120.19319 * 0.02562 * 18 16 15 20 20 C 1.37788 * 119.91003 * 179.97438 * 19 18 16 21 21 C 1.38549 * 120.30011 * 0.02562 * 20 19 18 22 22 C 1.38052 * 120.38826 * 359.97438 * 21 20 19 23 23 C 1.38709 * 120.08571 * 359.74743 * 22 21 20 24 24 O 1.35656 * 120.15300 * 180.28199 * 23 22 21 25 25 H 1.09004 * 109.46870 * 299.99935 * 1 2 3 26 26 H 1.09003 * 109.47090 * 59.99864 * 1 2 3 27 27 H 1.08999 * 109.47624 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47327 * 305.00108 * 4 2 1 29 29 H 1.09001 * 109.47151 * 64.99735 * 4 2 1 30 30 H 1.09003 * 109.47676 * 94.22779 * 6 5 4 31 31 H 1.09003 * 109.46702 * 214.22616 * 6 5 4 32 32 H 1.09000 * 109.47631 * 334.22484 * 6 5 4 33 33 H 0.96999 * 120.00125 * 180.02562 * 10 9 7 34 34 H 0.97008 * 120.00055 * 95.00141 * 15 2 1 35 35 H 1.08000 * 120.04713 * 359.97438 * 19 18 16 36 36 H 1.08005 * 119.85232 * 180.02562 * 20 19 18 37 37 H 1.07993 * 119.80544 * 179.97438 * 21 20 19 38 38 H 1.08005 * 119.95897 * 180.02562 * 22 21 20 39 39 H 0.96706 * 113.99849 * 270.25027 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.3342 0.2339 -1.7613 7 6 4.0848 -1.9159 -0.6023 8 1 3.5335 -2.8399 -0.5083 9 6 5.3863 -1.8328 -0.1269 10 7 5.9795 -0.6616 -0.0340 11 14 6.2960 -3.3834 0.3811 12 1 6.3968 -4.3015 -0.7816 13 1 7.6589 -3.0264 0.8502 14 1 5.5550 -4.0546 1.4791 15 7 2.0183 -0.6906 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8576 1.1614 2.4118 18 6 2.6394 -0.7136 3.5616 19 6 2.9737 -2.0688 3.5032 20 6 3.4334 -2.7123 4.6315 21 6 3.5655 -2.0216 5.8252 22 6 3.2387 -0.6822 5.8969 23 6 2.7798 -0.0171 4.7695 24 8 2.4638 1.3004 4.8370 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6053 -1.7198 -1.2951 29 1 1.7515 -0.1584 -2.1370 30 1 4.6023 0.9455 -0.9803 31 1 5.2402 -0.2030 -2.1813 32 1 3.7809 0.7484 -2.5471 33 1 6.8891 -0.6035 0.2979 34 1 2.2490 -1.6318 1.1526 35 1 2.8720 -2.6113 2.5749 36 1 3.6920 -3.7599 4.5851 37 1 3.9261 -2.5340 6.7048 38 1 3.3447 -0.1505 6.8310 39 1 1.5422 1.4721 5.0744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669776421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:48 Heat of formation + Delta-G solvation = -27.732032 kcal Electronic energy + Delta-G solvation = -22555.363090 eV Core-core repulsion = 19271.116286 eV Total energy + Delta-G solvation = -3284.246804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.99219 -38.24794 -36.44703 -36.10297 -33.89350 -31.86522 -30.80593 -29.68318 -29.33995 -26.15388 -25.59501 -23.78850 -22.37995 -21.66729 -20.39761 -19.59217 -18.19360 -17.23883 -16.58959 -15.83073 -15.38612 -14.90811 -14.87128 -14.57525 -14.23532 -13.79222 -13.62602 -13.18310 -12.99046 -12.80083 -12.23297 -12.10207 -11.97729 -11.76199 -11.49666 -11.37209 -11.25838 -10.84679 -10.71702 -10.46619 -10.35525 -10.20833 -10.07128 -9.82716 -9.09219 -8.83102 -8.56933 -8.49365 -8.15746 -6.77017 -5.73425 -3.19859 1.09918 1.44317 3.30934 3.36635 3.39151 3.41466 3.86960 4.18280 4.44522 4.45286 5.00325 5.04662 5.22359 5.35654 5.48851 5.55028 5.58515 5.68631 5.89013 5.94261 6.01284 6.03349 6.18711 6.27517 6.39672 6.44243 6.49084 6.56175 6.60387 6.77312 6.89879 6.92899 7.33974 7.39897 7.69677 7.81732 7.94302 8.35071 8.37626 9.01057 9.20613 9.84908 10.35380 11.30665 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.008459 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.124076 B = 3309.432153 C = 4642.186525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.262 4.262 8 H 0.065 0.935 9 C 0.010 3.990 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.281 1.281 15 N -0.683 5.683 16 C 0.558 3.442 17 O -0.545 6.545 18 C -0.149 4.149 19 C -0.061 4.061 20 C -0.140 4.140 21 C -0.087 4.087 22 C -0.163 4.163 23 C 0.161 3.839 24 O -0.476 6.476 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.044 0.956 32 H -0.004 1.004 33 H 0.253 0.747 34 H 0.401 0.599 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 -3.246 7.858 12.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.020 3.980 7 C -0.391 4.391 8 H 0.083 0.917 9 C -0.190 4.190 10 N -0.539 5.539 11 Si 0.724 3.276 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.207 1.207 15 N -0.333 5.333 16 C 0.345 3.655 17 O -0.424 6.424 18 C -0.153 4.153 19 C -0.080 4.080 20 C -0.159 4.159 21 C -0.106 4.106 22 C -0.182 4.182 23 C 0.114 3.886 24 O -0.286 6.286 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.014 0.986 33 H 0.064 0.936 34 H 0.238 0.762 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.433 -2.268 7.728 11.661 hybrid contribution 0.495 -1.295 0.481 1.467 sum -7.938 -3.562 8.209 11.961 Atomic orbital electron populations 1.22155 0.96938 1.01172 1.01508 1.21825 0.91716 0.98469 0.86939 0.90508 1.21191 0.86027 0.97826 0.93621 1.43858 0.98853 1.22617 1.66648 1.20794 0.92936 0.90474 0.93844 1.18995 0.97225 0.89392 1.33513 0.91740 1.24994 0.98632 0.96053 0.99280 1.70050 1.13386 1.21601 1.48900 0.86504 0.79538 0.83063 0.78458 1.21126 1.21664 1.20746 1.45644 1.64978 1.14233 1.08455 1.17896 0.78026 0.86395 0.83186 1.90715 1.51261 1.15120 1.85346 1.20581 1.05291 0.94411 0.95023 1.21373 0.94732 0.93099 0.98752 1.21091 1.01423 1.00556 0.92782 1.21118 0.97668 0.93827 0.97944 1.21359 1.03802 0.94909 0.98099 1.18507 0.95763 0.83249 0.91065 1.84785 1.32610 1.18994 1.92197 0.92995 0.92269 0.93077 0.93414 0.92959 0.95388 0.93738 0.98587 0.93644 0.76186 0.84881 0.85505 0.85630 0.85240 0.75445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 37.16 0.35 -2.08 16 2 C 0.12 2.26 2.88 -67.93 -0.20 2.07 16 3 H 0.08 1.71 7.58 -51.93 -0.39 1.32 16 4 C 0.14 2.75 5.36 -4.04 -0.02 2.73 16 5 N -0.60 -14.33 2.82 -181.12 -0.51 -14.84 16 6 C 0.16 4.07 9.01 59.85 0.54 4.61 16 7 C -0.26 -6.64 8.02 -15.06 -0.12 -6.76 16 8 H 0.06 1.56 7.84 -52.49 -0.41 1.15 16 9 C 0.01 0.27 5.13 -17.43 -0.09 0.18 16 10 N -0.90 -25.80 10.59 55.49 0.59 -25.21 16 11 Si 0.89 20.94 29.57 -169.99 -5.03 15.91 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 N -0.68 -13.60 4.44 -54.85 -0.24 -13.85 16 16 C 0.56 11.79 7.73 -12.47 -0.10 11.70 16 17 O -0.54 -12.79 14.82 -16.59 -0.25 -13.03 16 18 C -0.15 -2.79 5.89 -104.85 -0.62 -3.41 16 19 C -0.06 -1.01 9.53 -39.20 -0.37 -1.39 16 20 C -0.14 -1.98 10.02 -39.63 -0.40 -2.38 16 21 C -0.09 -1.11 10.03 -39.53 -0.40 -1.51 16 22 C -0.16 -2.27 9.98 -39.48 -0.39 -2.67 16 23 C 0.16 2.74 6.72 -38.69 -0.26 2.48 16 24 O -0.48 -8.14 11.58 -40.55 -0.47 -8.61 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 29 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 30 H 0.03 0.77 7.42 -51.93 -0.39 0.39 16 31 H 0.04 1.18 7.19 -51.93 -0.37 0.80 16 32 H 0.00 -0.10 7.84 -51.93 -0.41 -0.50 16 33 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.40 7.77 5.43 -40.82 -0.22 7.55 16 35 H 0.13 2.18 6.40 -52.49 -0.34 1.84 16 36 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 39 H 0.39 4.82 9.06 45.56 0.41 5.23 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -32.61 326.48 -7.67 -40.28 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.61 Total: 10.86 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -2.07 Total: 3.57 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.17 Total: -53.90 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.72 Total: -21.64 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.61 -7.67 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669776421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.546 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds