Wall clock time and date at job start Tue Mar 31 2020 00:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47301 * 2 1 4 4 C 1.53001 * 109.47067 * 120.00070 * 2 1 3 5 5 N 1.46507 * 109.47141 * 295.00092 * 4 2 1 6 6 C 1.36936 * 119.99688 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00411 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99597 * 180.02562 * 6 5 4 9 9 N 1.31615 * 119.99658 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99839 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47081 * 90.00487 * 10 8 6 12 12 H 1.48499 * 109.46755 * 210.00088 * 10 8 6 13 13 H 1.48498 * 109.47332 * 330.00079 * 10 8 6 14 14 C 1.52999 * 109.47225 * 240.00195 * 2 1 3 15 15 N 1.46491 * 109.47325 * 65.00335 * 14 2 1 16 16 C 1.34781 * 120.00436 * 180.02562 * 15 14 2 17 17 O 1.21783 * 119.99565 * 359.97438 * 16 15 14 18 18 C 1.41545 * 120.00395 * 179.97438 * 16 15 14 19 19 C 1.35623 * 119.99964 * 179.97438 * 18 16 15 20 20 C 1.41611 * 119.99751 * 179.71971 * 19 18 16 21 21 C 1.37955 * 126.10255 * 180.27432 * 20 19 18 22 22 C 1.40309 * 106.52781 * 179.97438 * 21 20 19 23 23 C 1.35159 * 107.20633 * 0.02562 * 22 21 20 24 24 O 1.34019 * 109.03017 * 359.76502 * 23 22 21 25 25 H 1.09002 * 109.46985 * 60.00357 * 1 2 3 26 26 H 1.09002 * 109.47301 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47633 * 299.99867 * 1 2 3 28 28 H 1.08996 * 109.47431 * 54.99985 * 4 2 1 29 29 H 1.09007 * 109.47046 * 175.00171 * 4 2 1 30 30 H 0.96995 * 119.99457 * 359.97438 * 5 4 2 31 31 H 0.97006 * 119.99756 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47089 * 304.99433 * 14 2 1 33 33 H 1.09007 * 109.47302 * 185.00201 * 14 2 1 34 34 H 0.97000 * 120.00250 * 359.97438 * 15 14 2 35 35 H 1.08002 * 119.99685 * 359.97438 * 18 16 15 36 36 H 1.08002 * 120.00354 * 0.02562 * 19 18 16 37 37 H 1.07997 * 126.73348 * 359.97438 * 21 20 19 38 38 H 1.07998 * 126.39552 * 179.97438 * 22 21 20 39 39 H 1.07998 * 125.47804 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6523 0.0353 2.4424 6 6 2.0018 -0.4203 3.6855 7 1 2.5629 -1.3377 3.7864 8 6 1.6341 0.2963 4.8161 9 7 1.9696 -0.1419 6.0110 10 14 0.6631 1.8825 4.6416 11 1 -0.7902 1.5785 4.6656 12 1 0.9969 2.7934 5.7659 13 1 1.0108 2.5367 3.3546 14 6 2.0399 -0.7212 -1.2492 15 7 1.6525 0.0354 -2.4423 16 6 1.9956 -0.4135 -3.6660 17 8 2.6282 -1.4479 -3.7797 18 6 1.6208 0.3173 -4.8188 19 6 1.9666 -0.1342 -6.0500 20 6 1.5864 0.5939 -7.2036 21 6 1.8646 0.2497 -8.5103 22 6 1.2998 1.2505 -9.3155 23 6 0.7137 2.1451 -8.4891 24 8 0.8835 1.7454 -7.2213 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2056 30 1 1.1488 0.8594 2.3517 31 1 1.7130 0.3590 6.8010 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2056 34 1 1.1483 0.8591 -2.3518 35 1 1.0595 1.2344 -4.7179 36 1 2.5276 -1.0515 -6.1510 37 1 2.4099 -0.6194 -8.8473 38 1 1.3289 1.2975 -10.3940 39 1 0.1891 3.0362 -8.8008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732332350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:52 Heat of formation + Delta-G solvation = 2.389280 kcal Electronic energy + Delta-G solvation = -20074.135961 eV Core-core repulsion = 16791.195316 eV Total energy + Delta-G solvation = -3282.940646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.97677 -39.97985 -37.07301 -34.64670 -34.33704 -33.48055 -32.51375 -30.61155 -29.40111 -26.78093 -25.83382 -23.95623 -22.34235 -21.95082 -20.95685 -20.37759 -19.57389 -17.99780 -17.65706 -17.01094 -16.51874 -16.19346 -15.50101 -15.05270 -14.72703 -14.39628 -14.16402 -13.72216 -13.45245 -13.24642 -13.20203 -12.85907 -12.65115 -12.47663 -12.47041 -12.18581 -11.44800 -11.08889 -10.98861 -10.77392 -10.61242 -10.60088 -10.35275 -10.16033 -10.01568 -9.58100 -9.10869 -8.89986 -8.36607 -7.23082 -5.76484 -3.12018 0.07948 1.71385 2.30221 2.50768 3.21105 3.27767 3.36025 3.38146 3.44285 4.31232 4.47194 4.52149 4.58591 4.76595 4.85558 5.01498 5.10543 5.20951 5.24972 5.31815 5.53948 5.57509 5.64154 5.67503 5.74203 5.79484 5.90269 5.94673 6.01981 6.09855 6.24157 6.41334 6.45610 6.60895 6.66330 6.75860 7.42890 8.00045 8.12810 8.42465 9.21382 9.93496 10.13326 11.41970 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040344 B = 0.002448 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.860520 B =11433.735107 C =11976.384521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.720 5.720 16 C 0.545 3.455 17 O -0.549 6.549 18 C -0.201 4.201 19 C 0.005 3.995 20 C -0.008 4.008 21 C -0.165 4.165 22 C -0.219 4.219 23 C -0.021 4.021 24 O -0.166 6.166 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.361 0.639 31 H 0.259 0.741 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.130 0.870 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 4.913 -31.577 32.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.002 3.998 15 N -0.371 5.371 16 C 0.335 3.665 17 O -0.429 6.429 18 C -0.222 4.222 19 C -0.014 4.014 20 C -0.058 4.058 21 C -0.184 4.184 22 C -0.238 4.238 23 C -0.090 4.090 24 O -0.061 6.061 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.194 0.806 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.235 0.765 35 H 0.148 0.852 36 H 0.179 0.821 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.181 4.168 -31.156 31.594 hybrid contribution -0.964 1.656 -0.124 1.920 sum -4.145 5.824 -31.279 32.086 Atomic orbital electron populations 1.21813 0.94781 1.02296 1.01193 1.21609 0.96628 1.00572 0.94623 0.90593 1.20558 0.97224 0.94252 0.84288 1.42690 1.67904 1.27081 1.02362 1.19071 1.29470 1.07053 0.81722 0.89157 1.24684 1.00853 0.98638 0.95117 1.69703 1.51312 1.40273 0.96913 0.86541 0.80436 0.84623 0.76883 1.21072 1.21722 1.20406 1.21403 1.00372 0.95319 0.82666 1.46002 1.57264 1.27727 1.06094 1.16969 0.80200 0.85474 0.83884 1.90849 1.40418 1.24520 1.87160 1.22130 1.04776 1.02254 0.93064 1.20676 0.94835 0.97272 0.88663 1.19923 1.01848 0.88536 0.95456 1.22396 1.03238 1.01425 0.91346 1.21810 1.04273 0.96519 1.01189 1.24348 1.03182 1.01210 0.80255 1.84108 1.57534 1.34522 1.29932 0.93624 0.92323 0.91875 0.95068 0.95240 0.80643 0.93068 0.91038 0.91041 0.76455 0.85231 0.82137 0.82537 0.82887 0.77675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.94 37.15 0.33 -1.61 16 2 C -0.12 -1.66 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.10 16 5 N -0.75 -17.80 5.13 -59.90 -0.31 -18.11 16 6 C -0.24 -6.94 10.47 -15.06 -0.16 -7.09 16 7 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 8 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 9 N -0.93 -29.53 13.97 55.49 0.78 -28.75 16 10 Si 0.88 22.06 27.74 -169.99 -4.71 17.34 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 14 C 0.13 1.67 5.06 -4.05 -0.02 1.65 16 15 N -0.72 -8.18 5.27 -63.25 -0.33 -8.51 16 16 C 0.54 6.82 7.56 -15.00 -0.11 6.70 16 17 O -0.55 -8.81 16.11 5.11 0.08 -8.73 16 18 C -0.20 -1.97 9.41 -39.26 -0.37 -2.34 16 19 C 0.01 0.05 9.39 -39.23 -0.37 -0.32 16 20 C -0.01 -0.07 6.84 -38.40 -0.26 -0.34 16 21 C -0.16 -1.20 10.90 -38.91 -0.42 -1.62 16 22 C -0.22 -1.32 10.87 -39.90 -0.43 -1.76 16 23 C -0.02 -0.12 12.06 29.64 0.36 0.24 16 24 O -0.17 -1.41 10.18 4.71 0.05 -1.36 16 25 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.96 7.18 -51.93 -0.37 0.59 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 30 H 0.36 8.22 4.71 -40.82 -0.19 8.03 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 3.60 7.61 -40.82 -0.31 3.28 16 35 H 0.13 1.04 7.72 -52.49 -0.41 0.63 16 36 H 0.16 1.43 7.46 -52.49 -0.39 1.03 16 37 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.21 0.42 8.06 -52.49 -0.42 -0.01 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -34.82 335.50 -6.64 -41.46 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.44 Total: 6.90 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -1.80 Total: -5.29 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.13 Total: -55.38 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.13 Total: -10.09 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.82 -6.64 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732332350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.852 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds