Wall clock time and date at job start Tue Mar 31 2020 00:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47301 * 2 1 4 4 C 1.53001 * 109.47067 * 120.00070 * 2 1 3 5 5 N 1.46507 * 109.47141 * 295.00092 * 4 2 1 6 6 C 1.36936 * 119.99688 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00411 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99597 * 180.02562 * 6 5 4 9 9 N 1.31615 * 119.99658 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99839 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47081 * 90.00487 * 10 8 6 12 12 H 1.48499 * 109.46755 * 210.00088 * 10 8 6 13 13 H 1.48498 * 109.47332 * 330.00079 * 10 8 6 14 14 C 1.52999 * 109.47225 * 240.00195 * 2 1 3 15 15 N 1.46491 * 109.47325 * 65.00335 * 14 2 1 16 16 C 1.34781 * 120.00436 * 180.02562 * 15 14 2 17 17 O 1.21783 * 119.99565 * 359.97438 * 16 15 14 18 18 C 1.41545 * 120.00395 * 179.97438 * 16 15 14 19 19 C 1.35623 * 119.99964 * 179.97438 * 18 16 15 20 20 C 1.41611 * 119.99751 * 179.71971 * 19 18 16 21 21 C 1.37955 * 126.10255 * 180.27432 * 20 19 18 22 22 C 1.40309 * 106.52781 * 179.97438 * 21 20 19 23 23 C 1.35159 * 107.20633 * 0.02562 * 22 21 20 24 24 O 1.34019 * 109.03017 * 359.76502 * 23 22 21 25 25 H 1.09002 * 109.46985 * 60.00357 * 1 2 3 26 26 H 1.09002 * 109.47301 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47633 * 299.99867 * 1 2 3 28 28 H 1.08996 * 109.47431 * 54.99985 * 4 2 1 29 29 H 1.09007 * 109.47046 * 175.00171 * 4 2 1 30 30 H 0.96995 * 119.99457 * 359.97438 * 5 4 2 31 31 H 0.97006 * 119.99756 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47089 * 304.99433 * 14 2 1 33 33 H 1.09007 * 109.47302 * 185.00201 * 14 2 1 34 34 H 0.97000 * 120.00250 * 359.97438 * 15 14 2 35 35 H 1.08002 * 119.99685 * 359.97438 * 18 16 15 36 36 H 1.08002 * 120.00354 * 0.02562 * 19 18 16 37 37 H 1.07997 * 126.73348 * 359.97438 * 21 20 19 38 38 H 1.07998 * 126.39552 * 179.97438 * 22 21 20 39 39 H 1.07998 * 125.47804 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6523 0.0353 2.4424 6 6 2.0018 -0.4203 3.6855 7 1 2.5629 -1.3377 3.7864 8 6 1.6341 0.2963 4.8161 9 7 1.9696 -0.1419 6.0110 10 14 0.6631 1.8825 4.6416 11 1 -0.7902 1.5785 4.6656 12 1 0.9969 2.7934 5.7659 13 1 1.0108 2.5367 3.3546 14 6 2.0399 -0.7212 -1.2492 15 7 1.6525 0.0354 -2.4423 16 6 1.9956 -0.4135 -3.6660 17 8 2.6282 -1.4479 -3.7797 18 6 1.6208 0.3173 -4.8188 19 6 1.9666 -0.1342 -6.0500 20 6 1.5864 0.5939 -7.2036 21 6 1.8646 0.2497 -8.5103 22 6 1.2998 1.2505 -9.3155 23 6 0.7137 2.1451 -8.4891 24 8 0.8835 1.7454 -7.2213 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2056 30 1 1.1488 0.8594 2.3517 31 1 1.7130 0.3590 6.8010 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2056 34 1 1.1483 0.8591 -2.3518 35 1 1.0595 1.2344 -4.7179 36 1 2.5276 -1.0515 -6.1510 37 1 2.4099 -0.6194 -8.8473 38 1 1.3289 1.2975 -10.3940 39 1 0.1891 3.0362 -8.8008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732332350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:52 Heat of formation + Delta-G solvation = -22.081709 kcal Electronic energy + Delta-G solvation = -20075.197103 eV Core-core repulsion = 16791.195316 eV Total energy + Delta-G solvation = -3284.001787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.49576 -40.96300 -38.40988 -36.09669 -35.16696 -34.18429 -33.96889 -32.42892 -30.09021 -27.89687 -27.31990 -25.00433 -23.67342 -22.82521 -21.77957 -21.54182 -20.52542 -19.56142 -18.62016 -17.90402 -17.21589 -17.06978 -16.55883 -16.49871 -15.88212 -15.66813 -15.50583 -15.08341 -14.84708 -14.22545 -13.92336 -13.84460 -13.70014 -13.62333 -13.52987 -13.21959 -13.07490 -12.87220 -12.27156 -12.07067 -11.99207 -11.76515 -11.70116 -11.69212 -11.10778 -10.98609 -10.85061 -10.12185 -9.30546 -8.95036 -8.02935 -5.37064 -0.58895 1.16334 1.37206 1.42238 1.49471 1.71433 2.02314 2.26758 2.43287 2.48601 3.28054 3.55274 3.71758 3.93517 3.98011 4.01597 4.07433 4.10897 4.16697 4.29803 4.52083 4.68222 4.69501 4.76475 4.89002 4.92596 5.00733 5.03690 5.09481 5.10738 5.22351 5.28231 5.38505 5.47763 5.53973 5.75159 6.08604 6.20642 6.55274 7.07448 7.21936 7.82429 8.03410 9.18628 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040344 B = 0.002448 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.860520 B =11433.735107 C =11976.384521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.158 3.842 5 N -0.754 5.754 6 C -0.238 4.238 7 H 0.053 0.947 8 C -0.068 4.068 9 N -0.985 5.985 10 Si 0.959 3.041 11 H -0.276 1.276 12 H -0.296 1.296 13 H -0.248 1.248 14 C 0.136 3.864 15 N -0.710 5.710 16 C 0.546 3.454 17 O -0.594 6.594 18 C -0.220 4.220 19 C 0.022 3.978 20 C -0.044 4.044 21 C -0.159 4.159 22 C -0.232 4.232 23 C -0.010 4.010 24 O -0.180 6.180 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.026 0.974 29 H 0.023 0.977 30 H 0.368 0.632 31 H 0.258 0.742 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.415 0.585 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.146 7.333 -34.751 35.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.105 0.895 4 C 0.032 3.968 5 N -0.400 5.400 6 C -0.369 4.369 7 H 0.071 0.929 8 C -0.259 4.259 9 N -0.635 5.635 10 Si 0.786 3.214 11 H -0.202 1.202 12 H -0.223 1.223 13 H -0.172 1.172 14 C 0.011 3.989 15 N -0.361 5.361 16 C 0.338 3.662 17 O -0.478 6.478 18 C -0.241 4.241 19 C 0.002 3.998 20 C -0.093 4.093 21 C -0.178 4.178 22 C -0.251 4.251 23 C -0.079 4.079 24 O -0.076 6.076 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.202 0.798 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.253 0.747 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.189 0.811 38 H 0.194 0.806 39 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -4.715 6.606 -34.381 35.326 hybrid contribution -0.441 0.829 0.674 1.156 sum -5.156 7.435 -33.707 34.900 Atomic orbital electron populations 1.21807 0.93614 1.02381 1.02120 1.21392 0.97407 1.00379 0.92528 0.89530 1.20714 0.96966 0.94253 0.84890 1.42633 1.67841 1.27654 1.01898 1.19040 1.28157 1.05685 0.83998 0.92877 1.25594 1.02716 1.03037 0.94560 1.69901 1.53376 1.42296 0.97940 0.85349 0.78725 0.79469 0.77892 1.20161 1.22278 1.17195 1.21135 0.99650 0.95127 0.82962 1.45824 1.57124 1.27990 1.05175 1.17342 0.79290 0.84939 0.84642 1.90826 1.42668 1.26562 1.87706 1.21990 1.06860 1.03232 0.92003 1.20728 0.93282 0.96763 0.89002 1.19918 1.04080 0.89594 0.95679 1.22797 1.02036 1.01844 0.91149 1.22193 1.04263 0.96169 1.02478 1.25217 1.01661 1.01734 0.79293 1.84099 1.57727 1.34494 1.31326 0.90295 0.92762 0.93271 0.95621 0.95853 0.79781 0.93308 0.91763 0.92096 0.74748 0.83398 0.82531 0.81144 0.80556 0.74048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.94 71.98 0.64 -2.85 16 2 C -0.10 -2.65 2.46 -10.80 -0.03 -2.68 16 3 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.16 5.99 5.65 86.38 0.49 6.47 16 5 N -0.75 -35.09 5.13 -343.43 -1.76 -36.86 16 6 C -0.24 -13.80 10.47 84.03 0.88 -12.92 16 7 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 8 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 9 N -0.98 -63.89 13.97 21.65 0.30 -63.59 16 10 Si 0.96 45.14 27.74 68.60 1.90 47.05 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.25 -10.31 6.52 99.48 0.65 -9.66 16 14 C 0.14 3.47 5.06 86.38 0.44 3.90 16 15 N -0.71 -14.98 5.27 -472.19 -2.49 -17.47 16 16 C 0.55 13.31 7.56 85.06 0.64 13.95 16 17 O -0.59 -19.27 16.11 -4.61 -0.07 -19.35 16 18 C -0.22 -4.09 9.41 22.48 0.21 -3.88 16 19 C 0.02 0.40 9.39 22.50 0.21 0.61 16 20 C -0.04 -0.71 6.84 23.04 0.16 -0.55 16 21 C -0.16 -2.00 10.90 22.71 0.25 -1.75 16 22 C -0.23 -2.13 10.87 22.06 0.24 -1.89 16 23 C -0.01 -0.09 12.06 67.11 0.81 0.72 16 24 O -0.18 -2.69 10.18 -6.06 -0.06 -2.75 16 25 H 0.08 1.42 7.18 -2.39 -0.02 1.40 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.36 7.18 -2.39 -0.02 1.35 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.37 15.97 4.71 -92.71 -0.44 15.53 16 31 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.42 6.30 7.61 -92.71 -0.71 5.60 16 35 H 0.15 2.10 7.72 -2.91 -0.02 2.08 16 36 H 0.16 2.80 7.46 -2.91 -0.02 2.78 16 37 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 39 H 0.24 -0.05 8.06 -2.91 -0.02 -0.08 16 Total: -1.00 -77.27 335.50 3.09 -74.19 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -0.14 Total: 23.22 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 5.41 Total: -4.43 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -3.95 Total: -117.92 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.14 Total: -22.10 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.05 kcal Total: -77.27 3.09 -74.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732332350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.104 kcal (2) G-P(sol) polarization free energy of solvation -77.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds