Wall clock time and date at job start Tue Mar 31 2020 00:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47338 * 2 1 4 4 N 1.46501 * 109.47280 * 120.00248 * 2 1 3 5 5 C 1.36939 * 119.99884 * 275.00188 * 4 2 1 6 6 H 1.08004 * 119.99992 * 359.97438 * 5 4 2 7 7 C 1.38807 * 119.99696 * 179.97438 * 5 4 2 8 8 N 1.31624 * 119.99784 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00437 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47473 * 89.99942 * 9 7 5 11 11 H 1.48500 * 109.47538 * 210.00137 * 9 7 5 12 12 H 1.48504 * 109.47168 * 329.99773 * 9 7 5 13 13 C 1.53000 * 109.47221 * 240.00203 * 2 1 3 14 14 H 1.08997 * 110.88440 * 299.20409 * 13 2 1 15 15 C 1.55156 * 111.00810 * 175.27742 * 13 2 1 16 16 C 1.54311 * 102.86633 * 206.22920 * 15 13 2 17 17 N 1.47023 * 107.27651 * 22.52484 * 16 15 13 18 18 C 1.34769 * 125.64975 * 180.96838 * 17 16 15 19 19 O 1.21702 * 120.00009 * 179.69852 * 18 17 16 20 20 C 1.46659 * 120.00211 * 359.69043 * 18 17 16 21 21 C 1.36539 * 125.98846 * 180.02562 * 20 18 17 22 22 C 1.40366 * 106.70725 * 179.97438 * 21 20 18 23 23 C 1.35132 * 107.11429 * 359.97438 * 22 21 20 24 24 O 1.33932 * 108.76697 * 0.02562 * 23 22 21 25 25 C 1.47427 * 108.70045 * 0.70608 * 17 16 15 26 26 H 1.09001 * 109.47076 * 54.77080 * 1 2 3 27 27 H 1.08991 * 109.47449 * 174.77384 * 1 2 3 28 28 H 1.09004 * 109.46803 * 294.77457 * 1 2 3 29 29 H 0.96995 * 119.99670 * 94.99701 * 4 2 1 30 30 H 0.97004 * 120.00354 * 180.02562 * 8 7 5 31 31 H 1.08998 * 110.71970 * 324.79246 * 15 13 2 32 32 H 1.08999 * 110.71811 * 87.88227 * 15 13 2 33 33 H 1.08994 * 109.98565 * 263.05132 * 16 15 13 34 34 H 1.08995 * 109.77243 * 141.88303 * 16 15 13 35 35 H 1.08001 * 126.64748 * 0.02562 * 21 20 18 36 36 H 1.08000 * 126.44130 * 180.02562 * 22 21 20 37 37 H 1.07997 * 125.61433 * 179.97438 * 23 22 21 38 38 H 1.09002 * 110.36694 * 94.93463 * 25 17 16 39 39 H 1.08998 * 110.36483 * 217.14613 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6113 -0.6621 3.5092 8 7 2.7375 -0.0054 4.6429 9 14 3.0543 -2.4748 3.4256 10 1 4.4869 -2.6181 3.0618 11 1 2.8143 -3.1047 4.7489 12 1 2.2138 -3.1430 2.3997 13 6 2.0400 -0.7212 -1.2493 14 1 1.7011 -1.7570 -1.2655 15 6 3.5864 -0.6395 -1.3463 16 6 3.8426 -0.7654 -2.8628 17 7 2.6072 -0.3606 -3.5494 18 6 2.4178 -0.3491 -4.8837 19 8 1.3468 0.0015 -5.3433 20 6 3.5022 -0.7590 -5.7819 21 6 3.4447 -0.7936 -7.1456 22 6 4.6977 -1.2429 -7.5911 23 6 5.4557 -1.4595 -6.4936 24 8 4.7318 -1.1670 -5.4054 25 6 1.6078 0.0247 -2.5364 26 1 -0.3633 0.5928 -0.8395 27 1 -0.3634 -1.0233 -0.0936 28 1 -0.3633 0.4307 0.9331 29 1 2.2490 -1.6318 1.1525 30 1 3.0609 -0.4627 5.4349 31 1 3.9464 0.3174 -0.9687 32 1 4.0507 -1.4648 -0.8065 33 1 4.0857 -1.7975 -3.1151 34 1 4.6613 -0.1075 -3.1542 35 1 2.5992 -0.5263 -7.7622 36 1 4.9994 -1.3874 -8.6180 37 1 6.4767 -1.8114 -6.4940 38 1 1.6274 1.1025 -2.3749 39 1 0.6123 -0.2939 -2.8453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733521553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:58 Heat of formation + Delta-G solvation = -2.393418 kcal Electronic energy + Delta-G solvation = -21553.787183 eV Core-core repulsion = 18270.639144 eV Total energy + Delta-G solvation = -3283.148039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.92735 -39.97107 -37.92536 -35.44213 -33.37250 -32.49099 -31.02393 -30.03064 -29.62173 -27.64935 -25.01293 -23.46300 -22.08413 -22.01603 -21.34676 -19.96552 -19.87757 -18.06044 -17.52451 -16.74993 -16.63443 -16.10889 -15.38512 -14.89795 -14.22745 -13.87409 -13.76986 -13.43731 -13.32982 -13.14961 -12.98599 -12.80583 -12.59864 -12.50669 -12.26373 -11.90442 -11.57704 -11.01178 -10.84271 -10.61918 -10.52763 -10.39865 -10.33887 -10.26149 -9.96119 -9.60371 -9.06913 -8.96151 -8.68053 -7.30043 -5.78890 -3.14566 0.83744 2.07977 2.41285 2.94204 3.01907 3.34850 3.37456 3.43498 4.24777 4.56660 4.60254 4.62734 4.68736 4.79333 4.97646 5.23841 5.32390 5.40406 5.46591 5.47926 5.54743 5.62526 5.65737 5.80237 5.82415 5.92779 6.02089 6.07770 6.10821 6.20845 6.31898 6.40264 6.48413 6.61143 6.76908 7.00098 7.31241 7.88293 7.97306 8.40088 9.18434 9.90868 10.10632 11.39519 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.003879 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.011890 B = 7217.541496 C = 7875.915163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.190 3.810 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.081 0.919 15 C -0.119 4.119 16 C 0.100 3.900 17 N -0.607 5.607 18 C 0.612 3.388 19 O -0.526 6.526 20 C -0.070 4.070 21 C -0.125 4.125 22 C -0.226 4.226 23 C -0.011 4.011 24 O -0.158 6.158 25 C 0.115 3.885 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.360 0.640 30 H 0.259 0.741 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.209 0.791 38 H 0.076 0.924 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.125 -3.419 -22.724 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.100 0.900 15 C -0.157 4.157 16 C -0.022 4.022 17 N -0.339 5.339 18 C 0.401 3.599 19 O -0.404 6.404 20 C -0.122 4.122 21 C -0.146 4.146 22 C -0.245 4.245 23 C -0.081 4.081 24 O -0.053 6.053 25 C -0.007 4.007 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.193 0.807 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.226 0.774 38 H 0.094 0.906 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.639 -3.055 -22.512 23.188 hybrid contribution 0.482 -1.440 -0.151 1.526 sum 5.121 -4.496 -22.663 23.665 Atomic orbital electron populations 1.22469 0.98685 1.00683 1.01071 1.20103 0.92019 0.95465 0.84342 0.92279 1.42738 1.79864 1.09315 1.06997 1.19053 1.36835 0.95513 0.85653 0.89179 1.24658 1.01515 0.97387 0.95552 1.69700 1.52664 1.35572 1.00289 0.86575 0.78376 0.86876 0.76835 1.21107 1.21827 1.20358 1.22737 0.95268 1.00375 0.94334 0.90042 1.22629 0.96282 1.04311 0.92461 1.22213 0.86256 1.00332 0.93443 1.48433 1.16240 1.64604 1.04596 1.16169 0.85185 0.78379 0.80195 1.90884 1.24695 1.49440 1.75427 1.22070 0.85417 1.10247 0.94435 1.21964 0.99119 1.00610 0.92885 1.21856 0.94377 1.07864 1.00419 1.24449 0.98032 1.01978 0.83670 1.84185 1.21903 1.64206 1.35038 1.22371 0.92163 0.99837 0.86312 0.93980 0.93658 0.92029 0.80710 0.93069 0.89666 0.89730 0.91201 0.91091 0.82280 0.82665 0.77406 0.90594 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.22 37.16 0.34 -2.50 16 2 C 0.19 3.38 2.40 -67.93 -0.16 3.21 16 3 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 4 N -0.75 -16.53 4.71 -53.42 -0.25 -16.78 16 5 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 6 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 8 N -0.93 -28.82 13.97 55.49 0.78 -28.04 16 9 Si 0.88 21.50 27.73 -169.99 -4.71 16.78 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 13 C -0.11 -1.55 2.63 -88.47 -0.23 -1.79 16 14 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.12 -1.60 6.21 -24.90 -0.15 -1.75 16 16 C 0.10 1.20 5.54 -3.07 -0.02 1.18 16 17 N -0.61 -8.26 3.33 -172.07 -0.57 -8.83 16 18 C 0.61 8.94 7.82 -12.87 -0.10 8.84 16 19 O -0.53 -9.03 17.12 5.19 0.09 -8.94 16 20 C -0.07 -0.86 6.95 -36.80 -0.26 -1.12 16 21 C -0.13 -1.33 10.62 -39.39 -0.42 -1.75 16 22 C -0.23 -1.80 10.87 -39.89 -0.43 -2.24 16 23 C -0.01 -0.08 12.08 29.63 0.36 0.27 16 24 O -0.16 -1.68 8.28 5.00 0.04 -1.63 16 25 C 0.12 1.58 5.48 -2.53 -0.01 1.56 16 26 H 0.04 0.60 7.58 -51.93 -0.39 0.20 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.36 7.89 5.66 -40.82 -0.23 7.66 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.79 7.69 -51.93 -0.40 0.39 16 34 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 35 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.21 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 39 H 0.08 1.13 8.03 -51.93 -0.42 0.72 16 LS Contribution 325.59 15.07 4.91 4.91 Total: -1.00 -32.58 325.59 -6.72 -39.30 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.65 Total: 5.94 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.34 Total: -2.69 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.05 Total: -53.66 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.13 Total: -10.58 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.58 -6.72 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733521553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.906 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds