Wall clock time and date at job start Tue Mar 31 2020 00:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47338 * 2 1 4 4 N 1.46501 * 109.47280 * 120.00248 * 2 1 3 5 5 C 1.36939 * 119.99884 * 275.00188 * 4 2 1 6 6 H 1.08004 * 119.99992 * 359.97438 * 5 4 2 7 7 C 1.38807 * 119.99696 * 179.97438 * 5 4 2 8 8 N 1.31624 * 119.99784 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00437 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47473 * 89.99942 * 9 7 5 11 11 H 1.48500 * 109.47538 * 210.00137 * 9 7 5 12 12 H 1.48504 * 109.47168 * 329.99773 * 9 7 5 13 13 C 1.53000 * 109.47221 * 240.00203 * 2 1 3 14 14 H 1.08997 * 110.88440 * 299.20409 * 13 2 1 15 15 C 1.55156 * 111.00810 * 175.27742 * 13 2 1 16 16 C 1.54311 * 102.86633 * 206.22920 * 15 13 2 17 17 N 1.47023 * 107.27651 * 22.52484 * 16 15 13 18 18 C 1.34769 * 125.64975 * 180.96838 * 17 16 15 19 19 O 1.21702 * 120.00009 * 179.69852 * 18 17 16 20 20 C 1.46659 * 120.00211 * 359.69043 * 18 17 16 21 21 C 1.36539 * 125.98846 * 180.02562 * 20 18 17 22 22 C 1.40366 * 106.70725 * 179.97438 * 21 20 18 23 23 C 1.35132 * 107.11429 * 359.97438 * 22 21 20 24 24 O 1.33932 * 108.76697 * 0.02562 * 23 22 21 25 25 C 1.47427 * 108.70045 * 0.70608 * 17 16 15 26 26 H 1.09001 * 109.47076 * 54.77080 * 1 2 3 27 27 H 1.08991 * 109.47449 * 174.77384 * 1 2 3 28 28 H 1.09004 * 109.46803 * 294.77457 * 1 2 3 29 29 H 0.96995 * 119.99670 * 94.99701 * 4 2 1 30 30 H 0.97004 * 120.00354 * 180.02562 * 8 7 5 31 31 H 1.08998 * 110.71970 * 324.79246 * 15 13 2 32 32 H 1.08999 * 110.71811 * 87.88227 * 15 13 2 33 33 H 1.08994 * 109.98565 * 263.05132 * 16 15 13 34 34 H 1.08995 * 109.77243 * 141.88303 * 16 15 13 35 35 H 1.08001 * 126.64748 * 0.02562 * 21 20 18 36 36 H 1.08000 * 126.44130 * 180.02562 * 22 21 20 37 37 H 1.07997 * 125.61433 * 179.97438 * 23 22 21 38 38 H 1.09002 * 110.36694 * 94.93463 * 25 17 16 39 39 H 1.08998 * 110.36483 * 217.14613 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6113 -0.6621 3.5092 8 7 2.7375 -0.0054 4.6429 9 14 3.0543 -2.4748 3.4256 10 1 4.4869 -2.6181 3.0618 11 1 2.8143 -3.1047 4.7489 12 1 2.2138 -3.1430 2.3997 13 6 2.0400 -0.7212 -1.2493 14 1 1.7011 -1.7570 -1.2655 15 6 3.5864 -0.6395 -1.3463 16 6 3.8426 -0.7654 -2.8628 17 7 2.6072 -0.3606 -3.5494 18 6 2.4178 -0.3491 -4.8837 19 8 1.3468 0.0015 -5.3433 20 6 3.5022 -0.7590 -5.7819 21 6 3.4447 -0.7936 -7.1456 22 6 4.6977 -1.2429 -7.5911 23 6 5.4557 -1.4595 -6.4936 24 8 4.7318 -1.1670 -5.4054 25 6 1.6078 0.0247 -2.5364 26 1 -0.3633 0.5928 -0.8395 27 1 -0.3634 -1.0233 -0.0936 28 1 -0.3633 0.4307 0.9331 29 1 2.2490 -1.6318 1.1525 30 1 3.0609 -0.4627 5.4349 31 1 3.9464 0.3174 -0.9687 32 1 4.0507 -1.4648 -0.8065 33 1 4.0857 -1.7975 -3.1151 34 1 4.6613 -0.1075 -3.1542 35 1 2.5992 -0.5263 -7.7622 36 1 4.9994 -1.3874 -8.6180 37 1 6.4767 -1.8114 -6.4940 38 1 1.6274 1.1025 -2.3749 39 1 0.6123 -0.2939 -2.8453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733521553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:57 Heat of formation + Delta-G solvation = -24.062294 kcal Electronic energy + Delta-G solvation = -21554.726816 eV Core-core repulsion = 18270.639144 eV Total energy + Delta-G solvation = -3284.087672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.64653 -41.06452 -39.14814 -36.97342 -34.37276 -34.00969 -32.46102 -31.16247 -30.84544 -28.87430 -26.34156 -25.02555 -23.01170 -22.89955 -22.55398 -21.34187 -20.83207 -19.59446 -18.84399 -17.67277 -17.56862 -17.19306 -16.50039 -16.35501 -15.75822 -15.29587 -14.99260 -14.71834 -14.34253 -14.24087 -14.03168 -13.93523 -13.84666 -13.53998 -13.51533 -13.48349 -12.95848 -12.83030 -12.37651 -12.03805 -11.91510 -11.74497 -11.70055 -11.53289 -11.38462 -11.04478 -10.94704 -9.96835 -9.57132 -9.28577 -7.97595 -5.30504 0.01287 1.41086 1.42538 1.44455 1.51658 1.56252 2.04709 2.06394 2.52691 3.26822 3.34216 3.55636 3.61302 3.79791 3.96147 4.02795 4.12417 4.25266 4.32085 4.45964 4.55159 4.59973 4.66782 4.72007 4.83237 4.88214 4.92976 4.94742 5.02964 5.09286 5.12994 5.26490 5.35267 5.41754 5.57398 5.82654 5.89053 6.26155 6.28544 6.83296 7.13028 7.88730 8.08567 9.24259 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.003879 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.011890 B = 7217.541496 C = 7875.915163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.187 3.813 3 H 0.049 0.951 4 N -0.746 5.746 5 C -0.221 4.221 6 H 0.056 0.944 7 C -0.066 4.066 8 N -0.988 5.988 9 Si 0.953 3.047 10 H -0.274 1.274 11 H -0.302 1.302 12 H -0.252 1.252 13 C -0.096 4.096 14 H 0.088 0.912 15 C -0.117 4.117 16 C 0.109 3.891 17 N -0.609 5.609 18 C 0.609 3.391 19 O -0.565 6.565 20 C -0.107 4.107 21 C -0.125 4.125 22 C -0.233 4.233 23 C 0.009 3.991 24 O -0.167 6.167 25 C 0.119 3.881 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.033 0.967 29 H 0.365 0.635 30 H 0.256 0.744 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.158 0.842 36 H 0.184 0.816 37 H 0.254 0.746 38 H 0.076 0.924 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.706 -5.430 -25.331 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.078 3.922 3 H 0.067 0.933 4 N -0.389 5.389 5 C -0.352 4.352 6 H 0.074 0.926 7 C -0.257 4.257 8 N -0.639 5.639 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.230 1.230 12 H -0.176 1.176 13 C -0.116 4.116 14 H 0.107 0.893 15 C -0.155 4.155 16 C -0.013 4.013 17 N -0.340 5.340 18 C 0.399 3.601 19 O -0.447 6.447 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.252 4.252 23 C -0.061 4.061 24 O -0.063 6.063 25 C -0.004 4.004 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.199 0.801 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.176 0.824 36 H 0.201 0.799 37 H 0.270 0.730 38 H 0.094 0.906 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.215 -5.072 -25.177 26.424 hybrid contribution 0.022 -0.723 0.540 0.903 sum 6.237 -5.795 -24.636 26.066 Atomic orbital electron populations 1.22355 0.97647 1.01444 1.00755 1.20258 0.92618 0.95052 0.84228 0.93322 1.42691 1.80015 1.09481 1.06750 1.18984 1.34588 0.94293 0.87354 0.92645 1.25467 1.02635 1.02448 0.95149 1.69892 1.55004 1.37743 1.01242 0.85434 0.78795 0.80868 0.76817 1.20045 1.22976 1.17637 1.22526 0.96118 1.00192 0.92788 0.89340 1.22600 0.95266 1.03925 0.93720 1.22197 0.85821 1.01341 0.91900 1.48469 1.16594 1.64426 1.04509 1.16472 0.85428 0.77751 0.80436 1.90845 1.26380 1.51354 1.76079 1.21677 0.86113 1.13610 0.94429 1.22244 1.00313 0.99501 0.92497 1.22213 0.93131 1.07705 1.02143 1.25422 0.99054 0.99034 0.82578 1.84160 1.21360 1.64447 1.36292 1.22263 0.92353 0.99737 0.86020 0.91312 0.92901 0.94754 0.80121 0.93529 0.90670 0.89383 0.89906 0.90038 0.82390 0.79852 0.73002 0.90584 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.32 9.22 71.98 0.66 -4.66 16 2 C 0.19 6.49 2.40 44.99 0.11 6.60 16 3 H 0.05 1.80 8.07 -2.38 -0.02 1.78 16 4 N -0.75 -32.46 4.71 -322.94 -1.52 -33.98 16 5 C -0.22 -12.12 10.41 84.03 0.87 -11.25 16 6 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 7 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 8 N -0.99 -62.68 13.97 21.65 0.30 -62.37 16 9 Si 0.95 44.15 27.73 68.60 1.90 46.05 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 13 C -0.10 -2.64 2.63 -9.40 -0.02 -2.66 16 14 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.12 -2.94 6.21 31.78 0.20 -2.74 16 16 C 0.11 2.38 5.54 86.72 0.48 2.86 16 17 N -0.61 -15.82 3.33 -816.54 -2.72 -18.54 16 18 C 0.61 17.43 7.82 86.44 0.68 18.11 16 19 O -0.56 -19.56 17.12 -4.36 -0.07 -19.63 16 20 C -0.11 -2.49 6.95 24.07 0.17 -2.32 16 21 C -0.12 -2.45 10.62 22.39 0.24 -2.21 16 22 C -0.23 -2.92 10.87 22.07 0.24 -2.68 16 23 C 0.01 0.09 12.08 67.10 0.81 0.90 16 24 O -0.17 -3.07 8.28 -5.03 -0.04 -3.11 16 25 C 0.12 3.12 5.48 86.86 0.48 3.59 16 26 H 0.07 1.88 7.58 -2.39 -0.02 1.86 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.37 15.20 5.66 -92.71 -0.52 14.67 16 30 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.07 2.04 8.03 -2.39 -0.02 2.02 16 32 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 1.62 7.69 -2.39 -0.02 1.61 16 34 H 0.08 1.63 7.78 -2.39 -0.02 1.61 16 35 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 36 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.25 0.20 8.06 -2.91 -0.02 0.18 16 38 H 0.08 1.99 8.04 -2.39 -0.02 1.97 16 39 H 0.08 2.15 8.03 -2.39 -0.02 2.13 16 Total: -1.00 -72.73 325.59 3.69 -69.04 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.46 Total: 22.33 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 5.37 Total: 0.20 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -3.93 Total: -114.89 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.12 Total: -22.74 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.05 kcal Total: -72.73 3.69 -69.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733521553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.981 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds