Wall clock time and date at job start Tue Mar 31 2020 00:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47170 * 2 1 4 4 C 1.53004 * 109.46787 * 119.99847 * 2 1 3 5 5 N 1.46502 * 109.46979 * 174.99726 * 4 2 1 6 6 C 1.46499 * 119.99817 * 270.00269 * 5 4 2 7 7 C 1.36936 * 119.99636 * 89.99954 * 5 4 2 8 8 H 1.07993 * 120.00416 * 21.71201 * 7 5 4 9 9 C 1.38815 * 119.99725 * 201.70901 * 7 5 4 10 10 N 1.31618 * 120.00045 * 10.18861 * 9 7 5 11 11 Si 1.86796 * 119.99913 * 190.18810 * 9 7 5 12 12 H 1.48503 * 109.47127 * 60.00131 * 11 9 7 13 13 H 1.48502 * 109.46978 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47295 * 300.00207 * 11 9 7 15 15 N 1.46500 * 109.47017 * 239.99860 * 2 1 3 16 16 C 1.34772 * 120.00078 * 84.99893 * 15 2 1 17 17 O 1.21777 * 119.99892 * 0.02562 * 16 15 2 18 18 C 1.41552 * 119.99961 * 179.97438 * 16 15 2 19 19 C 1.35630 * 119.99823 * 173.89016 * 18 16 15 20 20 C 1.41606 * 120.00040 * 350.63648 * 19 18 16 21 21 C 1.37946 * 126.10176 * 139.34436 * 20 19 18 22 22 C 1.40318 * 106.53067 * 180.02562 * 21 20 19 23 23 C 1.35157 * 107.20014 * 0.02562 * 22 21 20 24 24 O 1.34022 * 109.03685 * 359.73059 * 23 22 21 25 25 H 1.08996 * 109.47170 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47189 * 300.00474 * 1 2 3 27 27 H 1.09001 * 109.46768 * 60.00023 * 1 2 3 28 28 H 1.08999 * 109.47108 * 295.00103 * 4 2 1 29 29 H 1.09003 * 109.47085 * 55.00082 * 4 2 1 30 30 H 1.09000 * 109.47379 * 94.69048 * 6 5 4 31 31 H 1.08999 * 109.46981 * 214.68640 * 6 5 4 32 32 H 1.09002 * 109.47389 * 334.68800 * 6 5 4 33 33 H 0.96994 * 120.00266 * 180.02562 * 10 9 7 34 34 H 0.96998 * 119.99747 * 265.00498 * 15 2 1 35 35 H 1.08003 * 120.00079 * 354.17227 * 18 16 15 36 36 H 1.08001 * 119.99861 * 170.63399 * 19 18 16 37 37 H 1.07997 * 126.73943 * 0.02562 * 21 20 19 38 38 H 1.07991 * 126.40317 * 179.97438 * 22 21 20 39 39 H 1.08004 * 125.47974 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8265 1.1907 6 6 4.1257 -1.9921 0.5613 7 6 4.2798 0.1648 1.7241 8 1 3.8735 0.8266 2.4745 9 6 5.5927 0.3188 1.3002 10 7 6.0284 -0.3477 0.2522 11 14 6.7409 1.4721 2.2171 12 1 6.8694 1.0247 3.6273 13 1 8.0774 1.4576 1.5700 14 1 6.1890 2.8502 2.1834 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0184 -2.3571 17 8 1.8578 1.1633 -2.4117 18 6 2.6194 -0.6856 -3.5127 19 6 2.6320 -0.0449 -4.7081 20 6 1.9944 1.2121 -4.8445 21 6 2.4751 2.2950 -5.5510 22 6 1.5230 3.3164 -5.4129 23 6 0.5226 2.8292 -4.6456 24 8 0.8059 1.5629 -4.3102 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7516 -0.1583 2.1370 29 1 1.6053 -1.7198 1.2952 30 1 4.3557 -1.7634 -0.4794 31 1 5.0456 -2.2406 1.0905 32 1 3.4414 -2.8394 0.6044 33 1 6.9458 -0.2403 -0.0438 34 1 2.2489 -1.6318 -1.1526 35 1 2.9654 -1.7063 -3.4434 36 1 3.1284 -0.4934 -5.5559 37 1 3.4024 2.3466 -6.1022 38 1 1.5793 4.3070 -5.8392 39 1 -0.3648 3.3714 -4.3541 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754298694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:51 Heat of formation + Delta-G solvation = 30.859343 kcal Electronic energy + Delta-G solvation = -22213.245295 eV Core-core repulsion = 18931.539204 eV Total energy + Delta-G solvation = -3281.706091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.09667 -39.29554 -36.43943 -34.15826 -33.53655 -32.52926 -31.29105 -30.24384 -28.29256 -26.14200 -25.58335 -24.03680 -21.72526 -21.36597 -20.77116 -19.92724 -19.07658 -17.56524 -16.79165 -16.18562 -15.55602 -15.40141 -14.84201 -14.33564 -14.02008 -13.91215 -13.53777 -13.19876 -12.84946 -12.81615 -12.57681 -12.30312 -12.10487 -11.97389 -11.83525 -11.38049 -11.05256 -10.79911 -10.75633 -10.51362 -10.17554 -9.96526 -9.82944 -9.77856 -9.56808 -9.23738 -8.55294 -8.25700 -7.67225 -6.73593 -5.69899 -3.14357 0.90124 2.41474 2.95882 3.41785 3.46503 3.47102 3.47528 3.91882 4.08658 4.53400 4.98820 5.19421 5.26088 5.34064 5.40498 5.52979 5.62542 5.73626 5.88317 5.97306 6.00165 6.05525 6.14394 6.22261 6.25722 6.31095 6.50641 6.52380 6.59987 6.68742 6.79536 6.95168 7.29103 7.37820 7.48088 7.69402 7.82781 8.24430 8.41497 8.95284 9.26333 9.88591 10.36004 11.35495 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.005480 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.944421 B = 5108.574657 C = 5701.685444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.118 3.882 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.254 4.254 8 H 0.067 0.933 9 C 0.004 3.996 10 N -0.907 5.907 11 Si 0.904 3.096 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.284 1.284 15 N -0.693 5.693 16 C 0.539 3.461 17 O -0.537 6.537 18 C -0.178 4.178 19 C -0.022 4.022 20 C 0.027 3.973 21 C -0.193 4.193 22 C -0.225 4.225 23 C -0.026 4.026 24 O -0.133 6.133 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.030 0.970 31 H 0.046 0.954 32 H -0.007 1.007 33 H 0.251 0.749 34 H 0.394 0.606 35 H 0.134 0.866 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.070 -1.314 -9.802 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.011 3.989 3 H 0.102 0.898 4 C 0.015 3.985 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.383 4.383 8 H 0.085 0.915 9 C -0.195 4.195 10 N -0.553 5.553 11 Si 0.735 3.265 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.210 1.210 15 N -0.342 5.342 16 C 0.327 3.673 17 O -0.417 6.417 18 C -0.199 4.199 19 C -0.042 4.042 20 C -0.023 4.023 21 C -0.213 4.213 22 C -0.244 4.244 23 C -0.096 4.096 24 O -0.027 6.027 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.011 0.989 33 H 0.061 0.939 34 H 0.228 0.772 35 H 0.152 0.848 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.256 -0.707 -9.672 14.115 hybrid contribution 1.138 0.458 0.375 1.283 sum -9.118 -0.249 -9.297 13.024 Atomic orbital electron populations 1.22132 0.96997 1.00939 1.01552 1.21805 0.91559 0.99093 0.86491 0.89812 1.21190 0.85757 0.97180 0.94423 1.43891 0.99061 1.20982 1.68131 1.20852 0.94543 0.84918 0.97790 1.19140 0.93625 1.09832 1.15738 0.91479 1.24986 0.98637 0.99107 0.96721 1.70029 1.16128 1.44624 1.24476 0.86338 0.80206 0.80899 0.79105 1.21135 1.21682 1.21020 1.45729 1.65596 1.13377 1.09462 1.16971 0.78772 0.87307 0.84206 1.90811 1.50332 1.15462 1.85109 1.22427 1.03086 1.01034 0.93336 1.20514 0.95466 0.90405 0.97801 1.19551 0.88130 0.96316 0.98351 1.22067 1.01302 0.93316 1.04596 1.21547 0.96159 1.00944 1.05762 1.24010 1.01513 0.83678 1.00396 1.84244 1.33378 1.27682 1.57349 0.93334 0.92306 0.92952 0.92453 0.94089 0.95186 0.93573 0.98899 0.93858 0.77207 0.84846 0.83136 0.83740 0.84000 0.78931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 37.16 0.35 -2.12 16 2 C 0.12 2.28 2.88 -67.93 -0.20 2.09 16 3 H 0.08 1.97 7.57 -51.93 -0.39 1.58 16 4 C 0.14 2.83 5.33 -4.04 -0.02 2.80 16 5 N -0.60 -14.59 2.78 -181.12 -0.50 -15.10 16 6 C 0.16 3.83 7.59 59.85 0.45 4.28 16 7 C -0.25 -6.98 9.69 -15.06 -0.15 -7.13 16 8 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 9 C 0.00 0.10 5.16 -17.43 -0.09 0.01 16 10 N -0.91 -26.34 10.48 55.49 0.58 -25.76 16 11 Si 0.90 22.40 29.57 -169.99 -5.03 17.38 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 N -0.69 -12.98 4.40 -56.72 -0.25 -13.23 16 16 C 0.54 10.60 7.33 -15.00 -0.11 10.49 16 17 O -0.54 -12.17 12.14 -19.59 -0.24 -12.41 16 18 C -0.18 -2.82 9.85 -39.25 -0.39 -3.20 16 19 C -0.02 -0.31 9.95 -39.23 -0.39 -0.70 16 20 C 0.03 0.45 5.27 -38.40 -0.20 0.24 16 21 C -0.19 -2.92 10.90 -38.91 -0.42 -3.34 16 22 C -0.22 -3.17 10.87 -39.90 -0.43 -3.61 16 23 C -0.03 -0.37 12.06 29.64 0.36 -0.02 16 24 O -0.13 -2.33 7.92 -20.02 -0.16 -2.49 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 29 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 30 H 0.03 0.74 6.96 -51.93 -0.36 0.38 16 31 H 0.05 1.19 7.14 -51.93 -0.37 0.82 16 32 H -0.01 -0.15 7.84 -51.93 -0.41 -0.56 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.39 6.74 7.13 -40.82 -0.29 6.44 16 35 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.19 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 328.37 15.07 4.95 4.95 Total: -1.00 -33.76 328.37 -7.46 -41.22 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.58 Total: 5.64 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.24 Total: -0.20 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.17 Total: -54.09 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.40 Total: -14.90 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.76 -7.46 -41.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754298694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.075 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds