Wall clock time and date at job start Tue Mar 31 2020 00:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47170 * 2 1 4 4 C 1.53004 * 109.46787 * 119.99847 * 2 1 3 5 5 N 1.46502 * 109.46979 * 174.99726 * 4 2 1 6 6 C 1.46499 * 119.99817 * 270.00269 * 5 4 2 7 7 C 1.36936 * 119.99636 * 89.99954 * 5 4 2 8 8 H 1.07993 * 120.00416 * 21.71201 * 7 5 4 9 9 C 1.38815 * 119.99725 * 201.70901 * 7 5 4 10 10 N 1.31618 * 120.00045 * 10.18861 * 9 7 5 11 11 Si 1.86796 * 119.99913 * 190.18810 * 9 7 5 12 12 H 1.48503 * 109.47127 * 60.00131 * 11 9 7 13 13 H 1.48502 * 109.46978 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47295 * 300.00207 * 11 9 7 15 15 N 1.46500 * 109.47017 * 239.99860 * 2 1 3 16 16 C 1.34772 * 120.00078 * 84.99893 * 15 2 1 17 17 O 1.21777 * 119.99892 * 0.02562 * 16 15 2 18 18 C 1.41552 * 119.99961 * 179.97438 * 16 15 2 19 19 C 1.35630 * 119.99823 * 173.89016 * 18 16 15 20 20 C 1.41606 * 120.00040 * 350.63648 * 19 18 16 21 21 C 1.37946 * 126.10176 * 139.34436 * 20 19 18 22 22 C 1.40318 * 106.53067 * 180.02562 * 21 20 19 23 23 C 1.35157 * 107.20014 * 0.02562 * 22 21 20 24 24 O 1.34022 * 109.03685 * 359.73059 * 23 22 21 25 25 H 1.08996 * 109.47170 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47189 * 300.00474 * 1 2 3 27 27 H 1.09001 * 109.46768 * 60.00023 * 1 2 3 28 28 H 1.08999 * 109.47108 * 295.00103 * 4 2 1 29 29 H 1.09003 * 109.47085 * 55.00082 * 4 2 1 30 30 H 1.09000 * 109.47379 * 94.69048 * 6 5 4 31 31 H 1.08999 * 109.46981 * 214.68640 * 6 5 4 32 32 H 1.09002 * 109.47389 * 334.68800 * 6 5 4 33 33 H 0.96994 * 120.00266 * 180.02562 * 10 9 7 34 34 H 0.96998 * 119.99747 * 265.00498 * 15 2 1 35 35 H 1.08003 * 120.00079 * 354.17227 * 18 16 15 36 36 H 1.08001 * 119.99861 * 170.63399 * 19 18 16 37 37 H 1.07997 * 126.73943 * 0.02562 * 21 20 19 38 38 H 1.07991 * 126.40317 * 179.97438 * 22 21 20 39 39 H 1.08004 * 125.47974 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8265 1.1907 6 6 4.1257 -1.9921 0.5613 7 6 4.2798 0.1648 1.7241 8 1 3.8735 0.8266 2.4745 9 6 5.5927 0.3188 1.3002 10 7 6.0284 -0.3477 0.2522 11 14 6.7409 1.4721 2.2171 12 1 6.8694 1.0247 3.6273 13 1 8.0774 1.4576 1.5700 14 1 6.1890 2.8502 2.1834 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0184 -2.3571 17 8 1.8578 1.1633 -2.4117 18 6 2.6194 -0.6856 -3.5127 19 6 2.6320 -0.0449 -4.7081 20 6 1.9944 1.2121 -4.8445 21 6 2.4751 2.2950 -5.5510 22 6 1.5230 3.3164 -5.4129 23 6 0.5226 2.8292 -4.6456 24 8 0.8059 1.5629 -4.3102 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7516 -0.1583 2.1370 29 1 1.6053 -1.7198 1.2952 30 1 4.3557 -1.7634 -0.4794 31 1 5.0456 -2.2406 1.0905 32 1 3.4414 -2.8394 0.6044 33 1 6.9458 -0.2403 -0.0438 34 1 2.2489 -1.6318 -1.1526 35 1 2.9654 -1.7063 -3.4434 36 1 3.1284 -0.4934 -5.5559 37 1 3.4024 2.3466 -6.1022 38 1 1.5793 4.3070 -5.8392 39 1 -0.3648 3.3714 -4.3541 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754298694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:50 Heat of formation + Delta-G solvation = 10.060514 kcal Electronic energy + Delta-G solvation = -22214.147200 eV Core-core repulsion = 18931.539204 eV Total energy + Delta-G solvation = -3282.607996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.25304 -40.75776 -38.12111 -35.82764 -34.86170 -33.68664 -33.11039 -31.87245 -29.47371 -27.96907 -27.39636 -25.32364 -23.41629 -22.51868 -22.19360 -21.45782 -20.36830 -18.82801 -18.77883 -17.49931 -17.00668 -16.77100 -16.63077 -15.84311 -15.51359 -15.34303 -15.13698 -14.85267 -14.46083 -14.11577 -13.73117 -13.67558 -13.39325 -13.35178 -13.12995 -13.06852 -12.79550 -12.64987 -12.56014 -12.28079 -12.05390 -11.82783 -11.70168 -10.99470 -10.82160 -10.64665 -10.58328 -9.79902 -8.85708 -8.71120 -7.81259 -5.25858 -0.28394 1.25850 1.43199 1.44582 1.50315 1.81940 2.34198 2.49564 2.58415 2.71031 3.32598 3.73048 3.90710 4.08470 4.18243 4.21893 4.27663 4.42708 4.53633 4.56313 4.76411 4.84904 4.85921 4.90257 4.92404 5.00345 5.11109 5.13241 5.23964 5.38242 5.41002 5.43915 5.64387 5.71350 5.79809 5.85385 6.34125 6.34905 6.81136 7.19140 7.51425 7.91399 8.31141 9.21052 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.005480 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.944421 B = 5108.574657 C = 5701.685444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.126 3.874 3 H 0.032 0.968 4 C 0.143 3.857 5 N -0.613 5.613 6 C 0.176 3.824 7 C -0.260 4.260 8 H 0.065 0.935 9 C -0.051 4.051 10 N -0.930 5.930 11 Si 0.960 3.040 12 H -0.275 1.275 13 H -0.295 1.295 14 H -0.286 1.286 15 N -0.692 5.692 16 C 0.527 3.473 17 O -0.578 6.578 18 C -0.208 4.208 19 C -0.002 4.002 20 C -0.009 4.009 21 C -0.199 4.199 22 C -0.233 4.233 23 C -0.038 4.038 24 O -0.159 6.159 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.012 0.988 31 H 0.013 0.987 32 H 0.034 0.966 33 H 0.244 0.756 34 H 0.402 0.598 35 H 0.162 0.838 36 H 0.195 0.805 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.868 -1.840 -10.210 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.050 0.950 4 C 0.016 3.984 5 N -0.335 5.335 6 C 0.032 3.968 7 C -0.390 4.390 8 H 0.083 0.917 9 C -0.246 4.246 10 N -0.577 5.577 11 Si 0.789 3.211 12 H -0.201 1.201 13 H -0.221 1.221 14 H -0.213 1.213 15 N -0.341 5.341 16 C 0.318 3.682 17 O -0.461 6.461 18 C -0.229 4.229 19 C -0.022 4.022 20 C -0.059 4.059 21 C -0.218 4.218 22 C -0.252 4.252 23 C -0.108 4.108 24 O -0.053 6.053 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.238 0.762 35 H 0.180 0.820 36 H 0.212 0.788 37 H 0.183 0.817 38 H 0.186 0.814 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -11.082 -1.261 -10.062 15.021 hybrid contribution 1.298 0.698 0.474 1.548 sum -9.784 -0.563 -9.588 13.710 Atomic orbital electron populations 1.21979 0.93929 1.02603 1.01593 1.21566 0.93811 0.96187 0.86642 0.94981 1.21354 0.83283 0.99177 0.94599 1.44095 1.00836 1.20611 1.67989 1.20634 0.94233 0.85914 0.96038 1.19432 0.94185 1.09989 1.15435 0.91718 1.25654 1.00138 1.00977 0.97827 1.70185 1.15799 1.46012 1.25696 0.85460 0.78198 0.79023 0.78450 1.20088 1.22078 1.21286 1.45727 1.65534 1.13692 1.09151 1.17634 0.78144 0.87120 0.85337 1.90778 1.52272 1.17186 1.85843 1.22501 1.05320 1.02600 0.92445 1.21130 0.93310 0.89120 0.98598 1.20133 0.88673 0.97799 0.99313 1.22503 1.02079 0.93201 1.04038 1.21958 0.95656 1.01979 1.05563 1.24763 1.02798 0.83112 1.00082 1.84221 1.34090 1.28929 1.58022 0.90740 0.90745 0.94433 0.92100 0.90648 0.96951 0.96801 0.94726 0.94640 0.76214 0.82016 0.78786 0.81693 0.81375 0.76096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 9.48 71.98 0.68 -3.58 16 2 C 0.13 4.82 2.88 44.99 0.13 4.95 16 3 H 0.03 1.56 7.57 -2.39 -0.02 1.54 16 4 C 0.14 5.42 5.33 86.38 0.46 5.88 16 5 N -0.61 -29.55 2.78 -726.93 -2.02 -31.57 16 6 C 0.18 8.13 7.59 127.77 0.97 9.10 16 7 C -0.26 -14.37 9.69 84.03 0.81 -13.56 16 8 H 0.07 3.53 7.84 -2.91 -0.02 3.51 16 9 C -0.05 -2.89 5.16 84.86 0.44 -2.45 16 10 N -0.93 -54.88 10.48 21.65 0.23 -54.65 16 11 Si 0.96 46.57 29.57 68.60 2.03 48.60 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 13 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 14 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 15 N -0.69 -25.68 4.40 -451.54 -1.99 -27.67 16 16 C 0.53 20.94 7.33 85.06 0.62 21.56 16 17 O -0.58 -26.93 12.14 19.03 0.23 -26.70 16 18 C -0.21 -6.43 9.85 22.48 0.22 -6.21 16 19 C 0.00 -0.06 9.95 22.50 0.22 0.17 16 20 C -0.01 -0.30 5.27 23.03 0.12 -0.18 16 21 C -0.20 -5.78 10.90 22.71 0.25 -5.53 16 22 C -0.23 -6.29 10.87 22.07 0.24 -6.05 16 23 C -0.04 -1.09 12.06 67.11 0.81 -0.28 16 24 O -0.16 -5.57 7.92 17.48 0.14 -5.44 16 25 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16 29 H 0.08 2.37 7.86 -2.39 -0.02 2.35 16 30 H 0.01 0.61 6.96 -2.39 -0.02 0.59 16 31 H 0.01 0.69 7.14 -2.39 -0.02 0.68 16 32 H 0.03 1.28 7.84 -2.39 -0.02 1.26 16 33 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.40 13.26 7.13 -92.71 -0.66 12.60 16 35 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 36 H 0.20 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.17 3.90 8.06 -2.91 -0.02 3.87 16 38 H 0.17 3.47 8.06 -2.92 -0.02 3.44 16 39 H 0.22 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -75.20 328.37 4.98 -70.22 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.38 Total: 23.37 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.98 Total: 3.83 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -3.78 Total: -113.89 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: 0.37 Total: -32.14 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -75.20 4.98 -70.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754298694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.285 kcal (2) G-P(sol) polarization free energy of solvation -75.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds