Wall clock time and date at job start Tue Mar 31 2020 01:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99864 * 2 1 4 4 N 1.34773 * 119.99838 * 180.02562 * 2 1 3 5 5 C 1.39921 * 119.99974 * 184.61882 * 4 2 1 6 6 C 1.38953 * 120.03196 * 324.88634 * 5 4 2 7 7 C 1.38138 * 120.07612 * 180.02562 * 6 5 4 8 8 C 1.38175 * 120.14515 * 359.97438 * 7 6 5 9 9 C 1.38944 * 120.06512 * 359.97438 * 8 7 6 10 10 N 1.39674 * 120.03582 * 180.02562 * 9 8 7 11 11 C 1.46503 * 119.99644 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47196 * 90.00290 * 11 10 9 13 13 H 1.07999 * 119.99967 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00075 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00093 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00026 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47132 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47030 * 119.99786 * 16 14 12 19 19 H 1.48496 * 109.47186 * 239.99828 * 16 14 12 20 20 C 1.46496 * 120.00132 * 359.97438 * 10 9 8 21 21 C 1.53003 * 109.47041 * 89.99911 * 20 10 9 22 22 O 1.42903 * 109.47255 * 64.99728 * 21 20 10 23 23 C 1.38718 * 120.03405 * 144.90537 * 5 4 2 24 24 H 1.08999 * 109.47231 * 269.99928 * 1 2 3 25 25 H 1.09004 * 109.46947 * 30.00185 * 1 2 3 26 26 H 1.09000 * 109.47144 * 149.99452 * 1 2 3 27 27 H 0.97005 * 120.00100 * 4.61566 * 4 2 1 28 28 H 1.07997 * 119.96283 * 359.97438 * 6 5 4 29 29 H 1.07997 * 119.92890 * 180.02562 * 7 6 5 30 30 H 1.07998 * 119.96807 * 179.97438 * 8 7 6 31 31 H 1.08995 * 109.46994 * 210.00054 * 11 10 9 32 32 H 1.09000 * 109.47324 * 330.00367 * 11 10 9 33 33 H 0.96999 * 120.00210 * 180.02562 * 15 14 12 34 34 H 1.09005 * 109.46872 * 209.99454 * 20 10 9 35 35 H 1.08996 * 109.47430 * 330.00168 * 20 10 9 36 36 H 1.08999 * 109.47110 * 184.99511 * 21 20 10 37 37 H 1.08994 * 109.47433 * 305.00018 * 21 20 10 38 38 H 0.96697 * 114.00565 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.06605 * 359.70101 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5766 -1.1692 0.0971 6 6 4.3173 -0.1588 -0.5041 7 6 5.6954 -0.1603 -0.4088 8 6 6.3420 -1.1654 0.2846 9 6 5.6072 -2.1781 0.8889 10 7 6.2614 -3.1935 1.5902 11 6 5.4857 -4.2606 2.2275 12 6 5.3009 -5.3968 1.2549 13 1 5.7189 -5.3306 0.2613 14 6 4.5971 -6.5204 1.6332 15 7 4.0876 -6.6009 2.8430 16 14 4.3674 -7.9285 0.4275 17 1 5.0328 -7.5937 -0.8572 18 1 4.9698 -9.1643 0.9890 19 1 2.9176 -8.1473 0.1923 20 6 7.7230 -3.1916 1.6884 21 6 8.1496 -2.4088 2.9319 22 8 7.6928 -3.0889 4.1028 23 6 4.2225 -2.1801 0.7937 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6982 -2.0059 -0.0685 28 1 3.8150 0.6280 -1.0471 29 1 6.2686 0.6264 -0.8766 30 1 7.4195 -1.1639 0.3570 31 1 6.0173 -4.6195 3.1087 32 1 4.5107 -3.8737 2.5238 33 1 3.5928 -7.3916 3.1093 34 1 8.0834 -4.2176 1.7636 35 1 8.1463 -2.7219 0.8006 36 1 9.2365 -2.3315 2.9574 37 1 7.7149 -1.4099 2.8992 38 1 7.9285 -2.6483 4.9307 39 1 3.6486 -2.9640 1.2656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002163500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:19 Heat of formation + Delta-G solvation = -50.061668 kcal Electronic energy + Delta-G solvation = -21697.282298 eV Core-core repulsion = 18412.067209 eV Total energy + Delta-G solvation = -3285.215089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.11727 -38.57548 -36.79615 -35.29399 -34.08331 -32.62640 -30.63689 -30.13874 -28.66356 -27.99237 -25.94235 -23.14188 -22.70324 -21.41010 -20.88662 -19.26321 -17.57745 -17.10273 -16.57895 -16.35432 -15.76643 -15.46184 -15.06062 -14.67210 -14.33817 -13.94245 -13.68279 -13.50048 -13.09999 -12.71028 -12.70242 -12.61162 -12.30986 -12.02867 -11.69230 -11.34963 -11.24956 -11.02613 -10.95446 -10.67335 -10.32085 -10.20231 -9.85282 -9.69990 -9.64189 -9.52809 -8.74289 -8.46025 -7.72671 -6.45652 -5.98185 -4.12335 1.88014 2.33005 2.81978 3.25090 3.33446 3.34175 3.38286 4.11993 4.41734 4.51687 4.66951 4.83762 5.14799 5.25706 5.31745 5.47813 5.55258 5.57505 5.64435 5.72114 5.76524 5.96237 6.00758 6.11492 6.22214 6.36701 6.41639 6.74173 6.92182 7.05785 7.17521 7.22992 7.50712 7.59475 7.74260 7.85794 7.98267 8.22851 8.29174 8.33578 8.55108 8.97437 9.53458 10.99987 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012107 B = 0.006298 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.118851 B = 4444.730608 C = 5990.480841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.533 6.533 4 N -0.669 5.669 5 C 0.178 3.822 6 C -0.198 4.198 7 C -0.063 4.063 8 C -0.233 4.233 9 C 0.253 3.747 10 N -0.600 5.600 11 C 0.253 3.747 12 C -0.529 4.529 13 H 0.058 0.942 14 C 0.061 3.939 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.125 3.875 21 C 0.057 3.943 22 O -0.556 6.556 23 C -0.210 4.210 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.411 0.589 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.045 0.955 32 H 0.029 0.971 33 H 0.262 0.738 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.367 0.633 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 10.210 -3.150 10.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.409 6.409 4 N -0.314 5.314 5 C 0.084 3.916 6 C -0.220 4.220 7 C -0.083 4.083 8 C -0.256 4.256 9 C 0.146 3.854 10 N -0.305 5.305 11 C 0.133 3.867 12 C -0.568 4.568 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.001 3.999 21 C -0.022 4.022 22 O -0.360 6.360 23 C -0.235 4.235 24 H 0.114 0.886 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.246 0.754 28 H 0.142 0.858 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.213 0.787 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.161 10.240 -3.345 10.774 hybrid contribution -0.174 -0.992 -0.175 1.022 sum -0.335 9.248 -3.520 9.901 Atomic orbital electron populations 1.21882 0.91377 1.04856 1.04958 1.20888 0.90613 0.83382 0.75519 1.90707 1.70446 1.31350 1.48387 1.43613 1.05931 1.09627 1.72247 1.17451 0.81524 0.96241 0.96420 1.20729 0.93550 1.01344 1.06391 1.20562 0.93741 0.96863 0.97097 1.20567 0.98899 0.98227 1.07939 1.17606 0.90939 0.87496 0.89384 1.47051 1.04037 1.25058 1.54338 1.19296 0.91142 0.83238 0.92988 1.21672 1.34105 1.01360 0.99704 0.92362 1.24946 0.95599 0.98304 0.95246 1.69958 1.36230 1.29126 1.17978 0.86522 0.77813 0.82238 0.81346 1.19800 1.20998 1.21000 1.21336 0.82514 1.01377 0.94720 1.22779 0.96419 0.95708 0.87291 1.86701 1.81206 1.52614 1.15446 1.20519 0.93595 1.02609 1.06775 0.88649 0.88892 0.90021 0.75374 0.85824 0.86971 0.86956 0.93732 0.95280 0.92846 0.89890 0.90417 0.94002 0.93886 0.78737 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.31 36.01 0.37 -1.16 16 2 C 0.51 7.25 7.78 -10.99 -0.09 7.17 16 3 O -0.53 -9.65 14.53 5.55 0.08 -9.57 16 4 N -0.67 -9.99 5.33 -9.88 -0.05 -10.04 16 5 C 0.18 3.26 6.29 -83.72 -0.53 2.73 16 6 C -0.20 -3.58 8.69 -39.35 -0.34 -3.92 16 7 C -0.06 -1.06 10.03 -39.64 -0.40 -1.46 16 8 C -0.23 -4.10 9.21 -39.34 -0.36 -4.46 16 9 C 0.25 5.14 6.55 -83.82 -0.55 4.60 16 10 N -0.60 -12.74 2.55 -173.15 -0.44 -13.18 16 11 C 0.25 6.41 4.73 -5.19 -0.02 6.38 16 12 C -0.53 -14.40 9.39 -34.44 -0.32 -14.72 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 16 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.13 2.21 5.56 -4.04 -0.02 2.18 16 21 C 0.06 0.86 7.39 37.16 0.27 1.14 16 22 O -0.56 -9.44 12.48 -35.23 -0.44 -9.88 16 23 C -0.21 -4.28 9.12 -39.20 -0.36 -4.64 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.41 5.05 8.82 -40.82 -0.36 4.69 16 28 H 0.12 2.25 6.22 -52.49 -0.33 1.93 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.73 6.13 -52.49 -0.32 1.40 16 31 H 0.04 1.23 7.11 -51.93 -0.37 0.86 16 32 H 0.03 0.79 6.19 -51.93 -0.32 0.47 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.08 1.57 8.07 -51.93 -0.42 1.15 16 35 H 0.08 1.18 6.19 -51.93 -0.32 0.86 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.37 4.31 9.12 45.56 0.42 4.72 16 39 H 0.14 2.97 6.14 -52.48 -0.32 2.65 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -33.68 328.46 -7.06 -40.74 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.43 Total: 10.38 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.44 Total: -4.58 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.24 Total: -48.17 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.36 Total: -19.45 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.68 -7.06 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002163500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.321 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds