Wall clock time and date at job start Tue Mar 31 2020 01:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99864 * 2 1 4 4 N 1.34773 * 119.99838 * 180.02562 * 2 1 3 5 5 C 1.39921 * 119.99974 * 184.61882 * 4 2 1 6 6 C 1.38953 * 120.03196 * 324.88634 * 5 4 2 7 7 C 1.38138 * 120.07612 * 180.02562 * 6 5 4 8 8 C 1.38175 * 120.14515 * 359.97438 * 7 6 5 9 9 C 1.38944 * 120.06512 * 359.97438 * 8 7 6 10 10 N 1.39674 * 120.03582 * 180.02562 * 9 8 7 11 11 C 1.46503 * 119.99644 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47196 * 90.00290 * 11 10 9 13 13 H 1.07999 * 119.99967 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00075 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00093 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00026 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47132 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47030 * 119.99786 * 16 14 12 19 19 H 1.48496 * 109.47186 * 239.99828 * 16 14 12 20 20 C 1.46496 * 120.00132 * 359.97438 * 10 9 8 21 21 C 1.53003 * 109.47041 * 89.99911 * 20 10 9 22 22 O 1.42903 * 109.47255 * 64.99728 * 21 20 10 23 23 C 1.38718 * 120.03405 * 144.90537 * 5 4 2 24 24 H 1.08999 * 109.47231 * 269.99928 * 1 2 3 25 25 H 1.09004 * 109.46947 * 30.00185 * 1 2 3 26 26 H 1.09000 * 109.47144 * 149.99452 * 1 2 3 27 27 H 0.97005 * 120.00100 * 4.61566 * 4 2 1 28 28 H 1.07997 * 119.96283 * 359.97438 * 6 5 4 29 29 H 1.07997 * 119.92890 * 180.02562 * 7 6 5 30 30 H 1.07998 * 119.96807 * 179.97438 * 8 7 6 31 31 H 1.08995 * 109.46994 * 210.00054 * 11 10 9 32 32 H 1.09000 * 109.47324 * 330.00367 * 11 10 9 33 33 H 0.96999 * 120.00210 * 180.02562 * 15 14 12 34 34 H 1.09005 * 109.46872 * 209.99454 * 20 10 9 35 35 H 1.08996 * 109.47430 * 330.00168 * 20 10 9 36 36 H 1.08999 * 109.47110 * 184.99511 * 21 20 10 37 37 H 1.08994 * 109.47433 * 305.00018 * 21 20 10 38 38 H 0.96697 * 114.00565 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.06605 * 359.70101 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5766 -1.1692 0.0971 6 6 4.3173 -0.1588 -0.5041 7 6 5.6954 -0.1603 -0.4088 8 6 6.3420 -1.1654 0.2846 9 6 5.6072 -2.1781 0.8889 10 7 6.2614 -3.1935 1.5902 11 6 5.4857 -4.2606 2.2275 12 6 5.3009 -5.3968 1.2549 13 1 5.7189 -5.3306 0.2613 14 6 4.5971 -6.5204 1.6332 15 7 4.0876 -6.6009 2.8430 16 14 4.3674 -7.9285 0.4275 17 1 5.0328 -7.5937 -0.8572 18 1 4.9698 -9.1643 0.9890 19 1 2.9176 -8.1473 0.1923 20 6 7.7230 -3.1916 1.6884 21 6 8.1496 -2.4088 2.9319 22 8 7.6928 -3.0889 4.1028 23 6 4.2225 -2.1801 0.7937 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6982 -2.0059 -0.0685 28 1 3.8150 0.6280 -1.0471 29 1 6.2686 0.6264 -0.8766 30 1 7.4195 -1.1639 0.3570 31 1 6.0173 -4.6195 3.1087 32 1 4.5107 -3.8737 2.5238 33 1 3.5928 -7.3916 3.1093 34 1 8.0834 -4.2176 1.7636 35 1 8.1463 -2.7219 0.8006 36 1 9.2365 -2.3315 2.9574 37 1 7.7149 -1.4099 2.8992 38 1 7.9285 -2.6483 4.9307 39 1 3.6486 -2.9640 1.2656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002163500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:18 Heat of formation + Delta-G solvation = -74.808689 kcal Electronic energy + Delta-G solvation = -21698.355410 eV Core-core repulsion = 18412.067209 eV Total energy + Delta-G solvation = -3286.288201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.40608 -39.98638 -38.12301 -36.73641 -35.52090 -34.58245 -31.92376 -31.34813 -30.41392 -29.18566 -27.68726 -24.92960 -24.07360 -22.80103 -22.26151 -20.66673 -18.95885 -18.54039 -18.28730 -17.80175 -17.17654 -16.91198 -16.40040 -16.30950 -15.80482 -15.38769 -14.95165 -14.89442 -14.52357 -14.23347 -14.19901 -13.85076 -13.46040 -13.20905 -13.07147 -12.97829 -12.82247 -12.70072 -12.57583 -12.33085 -12.19470 -11.78161 -11.56109 -11.30020 -10.88375 -10.84079 -10.58995 -10.31735 -9.12666 -8.32835 -7.80791 -6.32328 0.49228 0.86563 1.37271 1.38922 1.51189 1.64988 2.18462 2.36775 2.64008 3.09681 3.11132 3.50686 3.85385 4.14422 4.27883 4.30825 4.38632 4.48538 4.51722 4.54008 4.64895 4.66822 4.73144 4.78625 4.96784 5.03427 5.07468 5.17358 5.34109 5.50798 5.53296 5.60438 5.74554 5.76527 6.13998 6.16977 6.52497 6.53787 6.86796 6.93353 7.04180 7.16602 7.38994 8.88431 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012107 B = 0.006298 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.118851 B = 4444.730608 C = 5990.480841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.503 3.497 3 O -0.574 6.574 4 N -0.668 5.668 5 C 0.176 3.824 6 C -0.206 4.206 7 C -0.055 4.055 8 C -0.226 4.226 9 C 0.232 3.768 10 N -0.611 5.611 11 C 0.277 3.723 12 C -0.539 4.539 13 H 0.050 0.950 14 C 0.012 3.988 15 N -0.927 5.927 16 Si 0.961 3.039 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.275 1.275 20 C 0.117 3.883 21 C 0.063 3.937 22 O -0.590 6.590 23 C -0.236 4.236 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.421 0.579 28 H 0.124 0.876 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.014 0.986 32 H 0.001 0.999 33 H 0.265 0.735 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.388 0.612 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.003 11.068 -4.593 11.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.294 3.706 3 O -0.453 6.453 4 N -0.314 5.314 5 C 0.081 3.919 6 C -0.228 4.228 7 C -0.074 4.074 8 C -0.250 4.250 9 C 0.126 3.874 10 N -0.316 5.316 11 C 0.155 3.845 12 C -0.578 4.578 13 H 0.068 0.932 14 C -0.187 4.187 15 N -0.567 5.567 16 Si 0.786 3.214 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.201 1.201 20 C -0.006 4.006 21 C -0.016 4.016 22 O -0.398 6.398 23 C -0.261 4.261 24 H 0.128 0.872 25 H 0.123 0.877 26 H 0.127 0.873 27 H 0.259 0.741 28 H 0.142 0.858 29 H 0.167 0.833 30 H 0.158 0.842 31 H 0.032 0.968 32 H 0.019 0.981 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.236 0.764 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.115 11.115 -4.791 12.104 hybrid contribution -0.273 -1.173 0.280 1.236 sum -0.158 9.942 -4.511 10.919 Atomic orbital electron populations 1.21922 0.86764 1.06784 1.06451 1.21904 0.92668 0.82228 0.73835 1.90678 1.71766 1.32609 1.50245 1.43743 1.04874 1.10776 1.71972 1.17577 0.83248 0.95548 0.95565 1.20918 0.94428 1.01091 1.06409 1.20976 0.93438 0.97088 0.95892 1.20808 1.00139 0.97124 1.06880 1.17921 0.91195 0.88187 0.90132 1.46881 1.05249 1.24641 1.54869 1.18676 0.89934 0.83989 0.91883 1.21857 1.34102 1.02289 0.99515 0.93208 1.25765 0.95143 1.00846 0.96912 1.70073 1.36868 1.30027 1.19742 0.85469 0.78058 0.78880 0.79006 1.19462 1.20391 1.20078 1.21599 0.80427 1.01107 0.97471 1.22769 0.98578 0.94747 0.85518 1.86650 1.81991 1.53979 1.17141 1.20417 0.94067 1.03093 1.08527 0.87152 0.87712 0.87349 0.74131 0.85835 0.83341 0.84214 0.96769 0.98090 0.92561 0.91998 0.87536 0.90059 0.93590 0.76362 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.31 71.24 0.73 -1.75 16 2 C 0.50 13.92 7.78 87.66 0.68 14.60 16 3 O -0.57 -20.52 14.53 -3.04 -0.04 -20.57 16 4 N -0.67 -19.90 5.33 -303.57 -1.62 -21.52 16 5 C 0.18 6.50 6.29 38.14 0.24 6.74 16 6 C -0.21 -7.26 8.69 22.42 0.19 -7.06 16 7 C -0.05 -1.71 10.03 22.23 0.22 -1.49 16 8 C -0.23 -7.54 9.21 22.42 0.21 -7.34 16 9 C 0.23 9.49 6.55 38.19 0.25 9.74 16 10 N -0.61 -26.51 2.55 -701.71 -1.79 -28.30 16 11 C 0.28 14.77 4.73 85.63 0.41 15.17 16 12 C -0.54 -30.31 9.39 25.60 0.24 -30.07 16 13 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 14 C 0.01 0.69 5.46 84.65 0.46 1.15 16 15 N -0.93 -54.80 13.29 21.45 0.28 -54.51 16 16 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 C 0.12 4.08 5.56 86.38 0.48 4.56 16 21 C 0.06 1.80 7.39 71.98 0.53 2.33 16 22 O -0.59 -20.12 12.48 -148.98 -1.86 -21.98 16 23 C -0.24 -9.97 9.12 22.52 0.21 -9.76 16 24 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.42 10.38 8.82 -92.70 -0.82 9.56 16 28 H 0.12 4.38 6.22 -2.91 -0.02 4.36 16 29 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 30 H 0.14 3.81 6.13 -2.91 -0.02 3.80 16 31 H 0.01 0.84 7.11 -2.39 -0.02 0.82 16 32 H 0.00 0.07 6.19 -2.39 -0.01 0.05 16 33 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.06 2.38 8.07 -2.38 -0.02 2.36 16 35 H 0.11 3.00 6.19 -2.39 -0.01 2.98 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.39 8.95 9.12 -74.06 -0.68 8.27 16 39 H 0.11 5.02 6.14 -2.91 -0.02 5.00 16 Total: -1.00 -75.73 328.46 1.45 -74.29 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.41 Total: 29.89 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 4.86 Total: -3.18 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -3.13 Total: -104.33 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -1.90 Total: -42.55 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -75.73 1.45 -74.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002163500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.521 kcal (2) G-P(sol) polarization free energy of solvation -75.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds