Wall clock time and date at job start Tue Mar 31 2020 00:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98444 * 359.72203 * 4 3 2 6 6 C 1.38104 * 120.01847 * 179.76661 * 5 4 3 7 7 C 1.38859 * 119.98516 * 0.53173 * 6 5 4 8 8 N 1.39939 * 120.02178 * 179.69905 * 7 6 5 9 9 C 1.46495 * 120.00316 * 0.02562 * 8 7 6 10 10 C 1.50694 * 109.47537 * 180.02562 * 9 8 7 11 11 O 1.21285 * 119.99819 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00203 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00238 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.47363 * 179.97438 * 13 12 10 15 15 H 1.07993 * 119.99897 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99960 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99768 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00211 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47141 * 89.99776 * 18 16 14 20 20 H 1.48498 * 109.46990 * 210.00174 * 18 16 14 21 21 H 1.48503 * 109.46965 * 330.00137 * 18 16 14 22 22 C 1.38868 * 119.95835 * 359.72038 * 7 6 5 23 23 C 1.38103 * 119.97978 * 0.02562 * 22 7 6 24 24 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07993 * 119.98782 * 0.02562 * 5 4 3 30 30 H 1.08007 * 120.00867 * 180.25619 * 6 5 4 31 31 H 0.97005 * 119.99779 * 180.02562 * 8 7 6 32 32 H 1.09005 * 109.46918 * 299.99817 * 9 8 7 33 33 H 1.09002 * 109.47272 * 59.99524 * 9 8 7 34 34 H 0.97001 * 120.00452 * 359.97438 * 12 10 9 35 35 H 1.08997 * 109.47092 * 300.00213 * 13 12 10 36 36 H 1.09002 * 109.47118 * 59.99556 * 13 12 10 37 37 H 0.97001 * 119.99802 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.00693 * 179.97438 * 22 7 6 39 39 H 1.08001 * 119.98708 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0069 6 6 5.5684 0.6055 0.0026 7 6 6.0995 1.8885 0.0030 8 7 7.4869 2.0719 0.0050 9 6 8.3794 0.9102 0.0061 10 6 9.8121 1.3774 0.0088 11 8 10.0630 2.5640 0.0093 12 7 10.8146 0.4767 0.0096 13 6 12.2074 0.9308 0.0117 14 6 13.1255 -0.2643 0.0129 15 1 12.7128 -1.2622 0.0126 16 6 14.4924 -0.0835 0.0155 17 7 15.2935 -1.1265 0.0170 18 14 15.2063 1.6427 0.0168 19 1 15.3928 2.1002 1.4172 20 1 16.5172 1.6367 -0.6808 21 1 14.2763 2.5635 -0.6850 22 6 5.2532 2.9895 0.0020 23 6 3.8842 2.8075 0.0010 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7859 -0.5724 0.0110 30 1 6.2259 -0.2513 0.0033 31 1 7.8576 2.9683 0.0057 32 1 8.1920 0.3089 0.8957 33 1 8.1945 0.3092 -0.8843 34 1 10.6140 -0.4724 0.0088 35 1 12.3947 1.5325 -0.8776 36 1 12.3924 1.5315 0.9023 37 1 16.2551 -0.9993 0.0185 38 1 5.6655 3.9877 0.0027 39 1 3.2258 3.6637 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020040294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:22 Heat of formation + Delta-G solvation = -52.498392 kcal Electronic energy + Delta-G solvation = -20118.902315 eV Core-core repulsion = 16833.581561 eV Total energy + Delta-G solvation = -3285.320754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.23633 -39.29849 -37.96514 -34.92459 -34.32675 -32.46717 -31.94136 -31.07707 -29.52734 -27.95673 -25.90476 -24.27637 -22.54826 -21.77957 -21.35919 -20.05187 -18.43003 -17.90803 -16.79998 -16.33030 -16.25740 -15.66799 -15.44618 -15.33424 -14.75996 -14.45813 -13.83272 -13.80907 -13.50442 -13.34365 -13.34218 -12.95799 -12.73433 -12.46147 -12.40510 -12.31099 -11.92876 -11.86893 -11.10918 -11.08562 -10.83445 -10.80827 -10.04183 -9.61136 -9.58536 -9.46550 -9.07816 -8.85567 -8.31773 -7.15711 -6.27650 -4.30802 1.26406 1.58285 2.99334 3.09479 3.21790 3.26037 3.31252 3.36519 3.78484 3.97134 4.27551 4.62755 4.62813 4.78660 4.83921 4.94791 5.07343 5.09920 5.16693 5.24083 5.31793 5.37611 5.39878 5.46775 5.52355 5.69368 5.87299 6.02718 6.22817 6.32314 6.56456 6.68704 6.96792 7.03975 7.19980 7.28582 7.42168 7.78812 8.01542 8.38272 8.62799 8.75507 9.31532 10.84116 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048158 B = 0.002487 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.281368 B =11255.100093 C =11805.329017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.063 3.937 5 C -0.156 4.156 6 C -0.164 4.164 7 C 0.192 3.808 8 N -0.735 5.735 9 C 0.105 3.895 10 C 0.496 3.504 11 O -0.556 6.556 12 N -0.699 5.699 13 C 0.220 3.780 14 C -0.546 4.546 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.890 5.890 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.261 1.261 22 C -0.157 4.157 23 C -0.101 4.101 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.411 0.589 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.399 0.601 35 H 0.027 0.973 36 H 0.022 0.978 37 H 0.268 0.732 38 H 0.128 0.872 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.972 1.772 -0.057 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.237 6.237 4 C 0.017 3.983 5 C -0.176 4.176 6 C -0.187 4.187 7 C 0.089 3.911 8 N -0.369 5.369 9 C -0.023 4.023 10 C 0.280 3.720 11 O -0.435 6.435 12 N -0.347 5.347 13 C 0.098 3.902 14 C -0.584 4.584 15 H 0.099 0.901 16 C -0.126 4.126 17 N -0.527 5.527 18 Si 0.704 3.296 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.186 1.186 22 C -0.180 4.180 23 C -0.120 4.120 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.249 0.751 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.233 0.767 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.146 0.854 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -25.582 2.511 -0.058 25.705 hybrid contribution 0.771 0.272 0.026 0.818 sum -24.811 2.783 -0.033 24.966 Atomic orbital electron populations 1.21766 0.93078 1.02657 1.03375 1.22682 0.95567 0.82554 1.01125 1.86034 1.19249 1.28544 1.89900 1.18701 0.82074 0.94001 1.03503 1.20963 0.93556 0.97784 1.05260 1.20470 0.94713 0.95491 1.08040 1.17752 0.83512 0.93641 0.96172 1.44383 1.01373 1.08678 1.82421 1.21053 0.88343 0.89816 1.03093 1.20403 0.87175 0.86918 0.77525 1.90646 1.84712 1.16727 1.51427 1.46128 1.07459 1.09360 1.71791 1.19542 0.77009 0.96681 0.96949 1.21066 0.90814 0.92874 1.53672 0.90145 1.24798 0.96738 0.97283 0.93794 1.69875 1.04013 1.29714 1.49119 0.86809 0.78997 0.84743 0.79080 1.19809 1.20818 1.18561 1.20416 0.92053 0.97770 1.07716 1.20117 0.94245 0.94727 1.02887 0.91641 0.91635 0.90577 0.92351 0.92355 0.85785 0.85734 0.75077 0.89604 0.89594 0.76685 0.95528 0.95991 0.92172 0.85415 0.85429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.42 5.46 37.16 0.20 0.63 16 3 O -0.32 -3.49 10.14 -19.72 -0.20 -3.69 16 4 C 0.06 0.72 6.69 -39.24 -0.26 0.46 16 5 C -0.16 -1.66 9.03 -39.46 -0.36 -2.02 16 6 C -0.16 -1.86 9.31 -39.40 -0.37 -2.22 16 7 C 0.19 2.37 6.66 -83.69 -0.56 1.82 16 8 N -0.73 -9.72 5.71 -59.76 -0.34 -10.06 16 9 C 0.11 1.36 5.39 -5.20 -0.03 1.33 16 10 C 0.50 8.78 7.90 -10.99 -0.09 8.69 16 11 O -0.56 -11.84 15.67 5.55 0.09 -11.75 16 12 N -0.70 -13.30 5.55 -61.47 -0.34 -13.64 16 13 C 0.22 5.24 4.50 -5.19 -0.02 5.21 16 14 C -0.55 -14.61 9.83 -34.44 -0.34 -14.95 16 15 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 16 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 17 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 18 Si 0.88 21.07 27.47 -169.99 -4.67 16.41 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 22 C -0.16 -1.80 9.89 -39.40 -0.39 -2.19 16 23 C -0.10 -1.12 9.98 -39.46 -0.39 -1.52 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 28 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 29 H 0.12 1.05 6.29 -52.49 -0.33 0.72 16 30 H 0.12 1.22 6.73 -52.48 -0.35 0.87 16 31 H 0.41 5.82 7.45 -40.82 -0.30 5.52 16 32 H 0.09 0.95 7.95 -51.93 -0.41 0.54 16 33 H 0.09 0.96 7.95 -51.93 -0.41 0.54 16 34 H 0.40 6.52 8.32 -40.82 -0.34 6.19 16 35 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 36 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -31.83 331.10 -7.42 -39.26 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.41 Total: 6.89 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.32 Total: -3.17 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.09 Total: -48.94 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.11 Total: -15.44 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.83 -7.42 -39.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020040294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.241 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds