Wall clock time and date at job start Tue Mar 31 2020 00:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98444 * 359.72203 * 4 3 2 6 6 C 1.38104 * 120.01847 * 179.76661 * 5 4 3 7 7 C 1.38859 * 119.98516 * 0.53173 * 6 5 4 8 8 N 1.39939 * 120.02178 * 179.69905 * 7 6 5 9 9 C 1.46495 * 120.00316 * 0.02562 * 8 7 6 10 10 C 1.50694 * 109.47537 * 180.02562 * 9 8 7 11 11 O 1.21285 * 119.99819 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00203 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00238 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.47363 * 179.97438 * 13 12 10 15 15 H 1.07993 * 119.99897 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99960 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99768 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00211 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47141 * 89.99776 * 18 16 14 20 20 H 1.48498 * 109.46990 * 210.00174 * 18 16 14 21 21 H 1.48503 * 109.46965 * 330.00137 * 18 16 14 22 22 C 1.38868 * 119.95835 * 359.72038 * 7 6 5 23 23 C 1.38103 * 119.97978 * 0.02562 * 22 7 6 24 24 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07993 * 119.98782 * 0.02562 * 5 4 3 30 30 H 1.08007 * 120.00867 * 180.25619 * 6 5 4 31 31 H 0.97005 * 119.99779 * 180.02562 * 8 7 6 32 32 H 1.09005 * 109.46918 * 299.99817 * 9 8 7 33 33 H 1.09002 * 109.47272 * 59.99524 * 9 8 7 34 34 H 0.97001 * 120.00452 * 359.97438 * 12 10 9 35 35 H 1.08997 * 109.47092 * 300.00213 * 13 12 10 36 36 H 1.09002 * 109.47118 * 59.99556 * 13 12 10 37 37 H 0.97001 * 119.99802 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.00693 * 179.97438 * 22 7 6 39 39 H 1.08001 * 119.98708 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0069 6 6 5.5684 0.6055 0.0026 7 6 6.0995 1.8885 0.0030 8 7 7.4869 2.0719 0.0050 9 6 8.3794 0.9102 0.0061 10 6 9.8121 1.3774 0.0088 11 8 10.0630 2.5640 0.0093 12 7 10.8146 0.4767 0.0096 13 6 12.2074 0.9308 0.0117 14 6 13.1255 -0.2643 0.0129 15 1 12.7128 -1.2622 0.0126 16 6 14.4924 -0.0835 0.0155 17 7 15.2935 -1.1265 0.0170 18 14 15.2063 1.6427 0.0168 19 1 15.3928 2.1002 1.4172 20 1 16.5172 1.6367 -0.6808 21 1 14.2763 2.5635 -0.6850 22 6 5.2532 2.9895 0.0020 23 6 3.8842 2.8075 0.0010 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7859 -0.5724 0.0110 30 1 6.2259 -0.2513 0.0033 31 1 7.8576 2.9683 0.0057 32 1 8.1920 0.3089 0.8957 33 1 8.1945 0.3092 -0.8843 34 1 10.6140 -0.4724 0.0088 35 1 12.3947 1.5325 -0.8776 36 1 12.3924 1.5315 0.9023 37 1 16.2551 -0.9993 0.0185 38 1 5.6655 3.9877 0.0027 39 1 3.2258 3.6637 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020040294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:21 Heat of formation + Delta-G solvation = -74.982712 kcal Electronic energy + Delta-G solvation = -20119.877308 eV Core-core repulsion = 16833.581561 eV Total energy + Delta-G solvation = -3286.295747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.12263 -40.62224 -38.85374 -36.34084 -35.61579 -34.45265 -32.54921 -31.90341 -30.84267 -29.38929 -27.05174 -24.95535 -24.13126 -22.82358 -22.24826 -21.51267 -19.47047 -19.08097 -18.36872 -17.55445 -16.98191 -16.90944 -16.74428 -16.60847 -16.05918 -15.61241 -15.14825 -15.03875 -14.60005 -14.36500 -14.25362 -14.12107 -13.99365 -13.79483 -13.49920 -13.12950 -13.00502 -12.90930 -12.70580 -12.49594 -11.95269 -11.72357 -11.67217 -11.56469 -10.99616 -10.93255 -10.47169 -10.00726 -9.90532 -8.40936 -8.04910 -6.48126 0.43626 0.72042 1.32056 1.34874 1.46283 1.58750 2.06969 2.26972 2.44357 2.75527 2.93791 2.94566 3.77616 3.91717 4.02541 4.12976 4.22408 4.33152 4.40177 4.40793 4.46922 4.52674 4.64107 4.75225 4.86500 4.99993 5.00477 5.07840 5.20034 5.24201 5.26701 5.37612 5.43924 5.50580 5.74473 6.04887 6.30535 6.52792 6.61618 6.72977 6.83402 7.12485 7.30437 8.73561 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048158 B = 0.002487 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.281368 B =11255.100093 C =11805.329017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.338 6.338 4 C 0.054 3.946 5 C -0.158 4.158 6 C -0.168 4.168 7 C 0.176 3.824 8 N -0.743 5.743 9 C 0.118 3.882 10 C 0.497 3.503 11 O -0.592 6.592 12 N -0.699 5.699 13 C 0.231 3.769 14 C -0.547 4.547 15 H 0.062 0.938 16 C 0.026 3.974 17 N -0.930 5.930 18 Si 0.937 3.063 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.260 1.260 22 C -0.163 4.163 23 C -0.111 4.111 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.404 0.596 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.413 0.587 35 H 0.014 0.986 36 H 0.013 0.987 37 H 0.272 0.728 38 H 0.135 0.865 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.518 1.589 -0.025 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.253 6.253 4 C 0.008 3.992 5 C -0.177 4.177 6 C -0.190 4.190 7 C 0.074 3.926 8 N -0.377 5.377 9 C -0.009 4.009 10 C 0.284 3.716 11 O -0.474 6.474 12 N -0.349 5.349 13 C 0.107 3.893 14 C -0.585 4.585 15 H 0.080 0.920 16 C -0.175 4.175 17 N -0.569 5.569 18 Si 0.761 3.239 19 H -0.191 1.191 20 H -0.199 1.199 21 H -0.185 1.185 22 C -0.186 4.186 23 C -0.131 4.131 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.159 0.841 31 H 0.241 0.759 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.249 0.751 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.081 0.919 38 H 0.153 0.847 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -27.178 2.296 -0.025 27.275 hybrid contribution 1.120 0.269 0.014 1.152 sum -26.058 2.565 -0.011 26.184 Atomic orbital electron populations 1.21794 0.91810 1.03971 1.03037 1.22962 0.96652 0.81302 1.01899 1.86027 1.18904 1.30598 1.89810 1.18925 0.82645 0.94375 1.03214 1.21208 0.93317 0.98644 1.04576 1.20712 0.95272 0.95572 1.07465 1.17906 0.83039 0.94405 0.97242 1.44386 1.01759 1.08294 1.83304 1.21051 0.84523 0.89948 1.05398 1.21177 0.88703 0.86032 0.75716 1.90630 1.85581 1.18435 1.52738 1.45931 1.06044 1.10492 1.72400 1.19126 0.79227 0.95084 0.95836 1.21292 0.91429 0.93154 1.52632 0.91968 1.25602 0.97376 1.00854 0.93657 1.69977 1.04516 1.31765 1.50609 0.85863 0.78416 0.80227 0.79399 1.19056 1.19949 1.18455 1.20575 0.92242 0.98184 1.07562 1.20316 0.94368 0.95378 1.02989 0.91979 0.91974 0.88430 0.91526 0.91523 0.83673 0.84090 0.75883 0.87105 0.87112 0.75085 0.96793 0.96907 0.91852 0.84711 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 71.98 0.74 -0.67 16 2 C 0.05 0.61 5.46 71.98 0.39 1.00 16 3 O -0.34 -6.85 10.14 -93.49 -0.95 -7.80 16 4 C 0.05 1.16 6.69 22.49 0.15 1.31 16 5 C -0.16 -3.01 9.03 22.35 0.20 -2.81 16 6 C -0.17 -3.37 9.31 22.39 0.21 -3.16 16 7 C 0.18 4.05 6.66 38.15 0.25 4.30 16 8 N -0.74 -18.47 5.71 -342.99 -1.96 -20.43 16 9 C 0.12 2.76 5.39 85.63 0.46 3.22 16 10 C 0.50 16.91 7.90 87.66 0.69 17.60 16 11 O -0.59 -24.88 15.67 -3.05 -0.05 -24.92 16 12 N -0.70 -25.83 5.55 -466.79 -2.59 -28.42 16 13 C 0.23 10.89 4.50 85.63 0.39 11.28 16 14 C -0.55 -29.33 9.83 25.60 0.25 -29.08 16 15 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 16 C 0.03 1.42 5.47 84.65 0.46 1.88 16 17 N -0.93 -54.68 13.96 21.45 0.30 -54.38 16 18 Si 0.94 43.31 27.47 68.60 1.88 45.20 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.26 -11.90 6.54 99.48 0.65 -11.25 16 22 C -0.16 -3.59 9.89 22.39 0.22 -3.36 16 23 C -0.11 -2.38 9.98 22.35 0.22 -2.15 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 28 H 0.07 0.76 7.65 -2.39 -0.02 0.74 16 29 H 0.15 2.04 6.29 -2.91 -0.02 2.02 16 30 H 0.14 2.28 6.73 -2.91 -0.02 2.26 16 31 H 0.40 11.16 7.45 -92.70 -0.69 10.47 16 32 H 0.11 2.08 7.95 -2.38 -0.02 2.06 16 33 H 0.11 2.08 7.95 -2.39 -0.02 2.07 16 34 H 0.41 12.91 8.32 -92.71 -0.77 12.14 16 35 H 0.01 0.70 7.20 -2.39 -0.02 0.69 16 36 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 37 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 39 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -67.96 331.10 0.84 -67.12 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.44 Total: 24.28 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 4.65 Total: -0.64 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -4.25 Total: -103.23 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.00 Total: -32.72 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.20 kcal Total: -67.96 0.84 -67.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020040294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.863 kcal (2) G-P(sol) polarization free energy of solvation -67.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds