Wall clock time and date at job start Tue Mar 31 2020 00:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47595 * 2 1 4 4 C 1.36004 * 117.00364 * 179.97438 * 3 2 1 5 5 C 1.38508 * 120.08172 * 359.97438 * 4 3 2 6 6 C 1.38285 * 120.01969 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.17880 * 0.02562 * 6 5 4 8 8 C 1.38217 * 120.16301 * 359.97438 * 7 6 5 9 9 C 1.38729 * 119.97977 * 0.02562 * 8 7 6 10 10 N 1.39959 * 120.09002 * 179.97438 * 9 8 7 11 11 C 1.46504 * 120.00090 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47213 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99856 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00231 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00248 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.47099 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99913 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99966 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00094 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47201 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47534 * 120.00186 * 20 18 16 23 23 H 1.48505 * 109.47088 * 240.00131 * 20 18 16 24 24 H 1.09003 * 109.47541 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47415 * 300.00322 * 1 2 3 26 26 H 1.09005 * 109.46606 * 60.00391 * 1 2 3 27 27 H 1.08997 * 109.47415 * 239.99677 * 2 1 3 28 28 H 1.09010 * 109.47027 * 119.99803 * 2 1 3 29 29 H 1.08007 * 119.98777 * 0.03715 * 5 4 3 30 30 H 1.07997 * 119.90476 * 180.27859 * 6 5 4 31 31 H 1.07994 * 119.91483 * 179.97438 * 7 6 5 32 32 H 1.07998 * 120.01004 * 180.02562 * 8 7 6 33 33 H 0.96998 * 120.00271 * 179.97438 * 10 9 8 34 34 H 1.09003 * 109.46734 * 299.99685 * 11 10 9 35 35 H 1.08996 * 109.46988 * 59.99833 * 11 10 9 36 36 H 0.97003 * 119.99913 * 359.97438 * 14 12 11 37 37 H 1.08995 * 109.47235 * 299.99695 * 15 14 12 38 38 H 1.08996 * 109.47188 * 59.99903 * 15 14 12 39 39 H 0.97003 * 119.99935 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.2000 0.4282 0.0016 6 6 5.5707 0.6108 0.0027 7 6 6.1018 1.8873 0.0033 8 6 5.2652 2.9876 0.0022 9 6 3.8891 2.8120 0.0011 10 7 3.0398 3.9245 0.0006 11 6 3.6038 5.2766 0.0006 12 6 2.4859 6.2872 0.0007 13 8 1.3317 5.9147 0.0002 14 7 2.7686 7.6050 0.0002 15 6 1.6819 8.5874 -0.0004 16 6 2.2621 9.9783 -0.0002 17 1 3.3331 10.1166 -0.0002 18 6 1.4255 11.0742 -0.0012 19 7 0.1211 10.9058 -0.0018 20 14 2.1446 12.7982 -0.0017 21 1 3.6273 12.7161 -0.0003 22 1 1.6896 13.5240 -1.2148 23 1 1.6884 13.5252 1.2102 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 3.7884 -0.5704 0.0014 30 1 6.2281 -0.2460 -0.0010 31 1 7.1729 2.0250 0.0045 32 1 5.6827 3.9836 0.0022 33 1 2.0778 3.8003 -0.0005 34 1 4.2175 5.4143 0.8909 35 1 4.2183 5.4140 -0.8891 36 1 3.6918 7.9030 0.0002 37 1 1.0680 8.4496 -0.8904 38 1 1.0677 8.4502 0.8895 39 1 -0.4675 11.6768 -0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020041362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:26 Heat of formation + Delta-G solvation = -55.330399 kcal Electronic energy + Delta-G solvation = -20600.536511 eV Core-core repulsion = 17315.092952 eV Total energy + Delta-G solvation = -3285.443559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28195 -39.00265 -37.58259 -35.18796 -34.21754 -32.41462 -31.97212 -30.10096 -29.55043 -27.66414 -25.90066 -24.08162 -22.57712 -22.04097 -21.15644 -19.80593 -18.52673 -17.50501 -16.57367 -16.18644 -16.18185 -15.44205 -15.25572 -15.19191 -14.85542 -14.40490 -14.03768 -13.72797 -13.56803 -13.25018 -13.00800 -12.72468 -12.62003 -12.11379 -12.00828 -11.93794 -11.67819 -11.46333 -11.01933 -10.94126 -10.94065 -10.83290 -10.36165 -10.09643 -9.43201 -9.23495 -8.79414 -8.55647 -7.99018 -7.12755 -6.20410 -4.27724 1.38874 1.59184 3.11768 3.20209 3.21691 3.28368 3.31297 3.41201 3.84614 4.11293 4.34247 4.72181 4.76766 4.87935 5.02283 5.05679 5.12097 5.15977 5.29415 5.38170 5.41052 5.44936 5.49486 5.62900 5.63988 5.77107 5.90474 6.13552 6.32592 6.57961 6.75573 7.06246 7.24021 7.32004 7.45496 7.54445 7.62337 7.90837 7.95754 8.51515 8.70384 8.96705 9.38867 10.89811 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026175 B = 0.003073 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.473002 B = 9110.423455 C =10148.845408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.317 6.317 4 C 0.055 3.945 5 C -0.164 4.164 6 C -0.150 4.150 7 C -0.104 4.104 8 C -0.175 4.175 9 C 0.204 3.796 10 N -0.727 5.727 11 C 0.105 3.895 12 C 0.493 3.507 13 O -0.551 6.551 14 N -0.706 5.706 15 C 0.249 3.751 16 C -0.544 4.544 17 H 0.064 0.936 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.417 0.583 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.393 0.607 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.699 -20.927 0.002 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 O -0.232 6.232 4 C 0.006 3.994 5 C -0.183 4.183 6 C -0.170 4.170 7 C -0.123 4.123 8 C -0.199 4.199 9 C 0.100 3.900 10 N -0.360 5.360 11 C -0.024 4.024 12 C 0.277 3.723 13 O -0.430 6.430 14 N -0.355 5.355 15 C 0.129 3.871 16 C -0.582 4.582 17 H 0.083 0.917 18 C -0.141 4.141 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.256 0.744 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.226 0.774 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.572 -20.709 0.001 22.413 hybrid contribution 0.499 0.872 -0.001 1.005 sum 9.071 -19.837 0.000 21.812 Atomic orbital electron populations 1.21778 0.92884 1.02556 1.03849 1.22679 0.95743 0.82210 1.00871 1.86043 1.18631 1.28834 1.89665 1.18411 0.82737 0.92412 1.05809 1.20950 0.94186 0.97073 1.06099 1.20632 0.94041 0.97059 1.05309 1.20774 0.99217 0.92014 1.00319 1.20526 0.90329 0.99740 1.09285 1.17231 0.90260 0.84549 0.98001 1.44337 1.09039 1.01201 1.81435 1.21096 0.95709 0.82727 1.02862 1.20348 0.89936 0.84131 0.77930 1.90664 1.21410 1.79837 1.51078 1.46404 1.11907 1.05322 1.71855 1.19154 0.85063 0.85035 0.97895 1.21247 0.93450 0.90231 1.53306 0.91741 1.24961 0.94747 0.99708 0.94634 1.69986 1.02404 1.31004 1.48832 0.86343 0.79189 0.83497 0.77777 1.19589 1.20771 1.20776 0.90612 0.91412 0.91407 0.92428 0.92427 0.85875 0.86477 0.86184 0.85402 0.74397 0.89739 0.89736 0.77423 0.95382 0.95386 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.58 5.46 37.16 0.20 0.78 16 3 O -0.32 -4.32 9.38 -19.75 -0.19 -4.50 16 4 C 0.05 0.74 6.70 -39.08 -0.26 0.47 16 5 C -0.16 -1.82 9.04 -39.46 -0.36 -2.18 16 6 C -0.15 -1.54 10.04 -39.56 -0.40 -1.93 16 7 C -0.10 -1.09 10.04 -39.58 -0.40 -1.49 16 8 C -0.18 -2.09 9.31 -39.41 -0.37 -2.46 16 9 C 0.20 2.87 6.67 -83.56 -0.56 2.31 16 10 N -0.73 -11.25 5.70 -59.67 -0.34 -11.59 16 11 C 0.10 1.50 5.40 -5.19 -0.03 1.47 16 12 C 0.49 9.61 7.90 -10.99 -0.09 9.52 16 13 O -0.55 -13.05 15.67 5.56 0.09 -12.97 16 14 N -0.71 -14.40 5.55 -61.48 -0.34 -14.74 16 15 C 0.25 6.51 5.43 -5.19 -0.03 6.48 16 16 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.88 -25.92 13.29 55.43 0.74 -25.18 16 20 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 28 H 0.06 0.48 7.66 -51.92 -0.40 0.08 16 29 H 0.12 1.09 6.30 -52.48 -0.33 0.76 16 30 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.31 6.74 -52.49 -0.35 0.96 16 33 H 0.42 7.31 6.80 -40.82 -0.28 7.03 16 34 H 0.08 1.04 7.95 -51.93 -0.41 0.62 16 35 H 0.08 1.04 7.95 -51.93 -0.41 0.62 16 36 H 0.39 6.69 8.32 -40.82 -0.34 6.35 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 333.57 15.07 5.03 5.03 Total: -1.00 -32.38 333.57 -7.77 -40.15 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.42 Total: 9.33 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.31 Total: -1.16 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.05 Total: -51.50 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.10 Total: -17.47 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.38 -7.77 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020041362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.185 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds