Wall clock time and date at job start Tue Mar 31 2020 00:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47595 * 2 1 4 4 C 1.36004 * 117.00364 * 179.97438 * 3 2 1 5 5 C 1.38508 * 120.08172 * 359.97438 * 4 3 2 6 6 C 1.38285 * 120.01969 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.17880 * 0.02562 * 6 5 4 8 8 C 1.38217 * 120.16301 * 359.97438 * 7 6 5 9 9 C 1.38729 * 119.97977 * 0.02562 * 8 7 6 10 10 N 1.39959 * 120.09002 * 179.97438 * 9 8 7 11 11 C 1.46504 * 120.00090 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47213 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99856 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00231 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00248 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.47099 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99913 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99966 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00094 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47201 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47534 * 120.00186 * 20 18 16 23 23 H 1.48505 * 109.47088 * 240.00131 * 20 18 16 24 24 H 1.09003 * 109.47541 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47415 * 300.00322 * 1 2 3 26 26 H 1.09005 * 109.46606 * 60.00391 * 1 2 3 27 27 H 1.08997 * 109.47415 * 239.99677 * 2 1 3 28 28 H 1.09010 * 109.47027 * 119.99803 * 2 1 3 29 29 H 1.08007 * 119.98777 * 0.03715 * 5 4 3 30 30 H 1.07997 * 119.90476 * 180.27859 * 6 5 4 31 31 H 1.07994 * 119.91483 * 179.97438 * 7 6 5 32 32 H 1.07998 * 120.01004 * 180.02562 * 8 7 6 33 33 H 0.96998 * 120.00271 * 179.97438 * 10 9 8 34 34 H 1.09003 * 109.46734 * 299.99685 * 11 10 9 35 35 H 1.08996 * 109.46988 * 59.99833 * 11 10 9 36 36 H 0.97003 * 119.99913 * 359.97438 * 14 12 11 37 37 H 1.08995 * 109.47235 * 299.99695 * 15 14 12 38 38 H 1.08996 * 109.47188 * 59.99903 * 15 14 12 39 39 H 0.97003 * 119.99935 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.2000 0.4282 0.0016 6 6 5.5707 0.6108 0.0027 7 6 6.1018 1.8873 0.0033 8 6 5.2652 2.9876 0.0022 9 6 3.8891 2.8120 0.0011 10 7 3.0398 3.9245 0.0006 11 6 3.6038 5.2766 0.0006 12 6 2.4859 6.2872 0.0007 13 8 1.3317 5.9147 0.0002 14 7 2.7686 7.6050 0.0002 15 6 1.6819 8.5874 -0.0004 16 6 2.2621 9.9783 -0.0002 17 1 3.3331 10.1166 -0.0002 18 6 1.4255 11.0742 -0.0012 19 7 0.1211 10.9058 -0.0018 20 14 2.1446 12.7982 -0.0017 21 1 3.6273 12.7161 -0.0003 22 1 1.6896 13.5240 -1.2148 23 1 1.6884 13.5252 1.2102 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 3.7884 -0.5704 0.0014 30 1 6.2281 -0.2460 -0.0010 31 1 7.1729 2.0250 0.0045 32 1 5.6827 3.9836 0.0022 33 1 2.0778 3.8003 -0.0005 34 1 4.2175 5.4143 0.8909 35 1 4.2183 5.4140 -0.8891 36 1 3.6918 7.9030 0.0002 37 1 1.0680 8.4496 -0.8904 38 1 1.0677 8.4502 0.8895 39 1 -0.4675 11.6768 -0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020041362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:25 Heat of formation + Delta-G solvation = -78.586727 kcal Electronic energy + Delta-G solvation = -20601.544981 eV Core-core repulsion = 17315.092952 eV Total energy + Delta-G solvation = -3286.452029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23520 -40.54981 -38.50080 -36.45441 -35.93028 -34.40625 -32.74358 -31.12503 -30.57359 -29.32906 -27.24763 -25.03623 -24.35533 -22.89718 -22.19766 -21.36862 -19.62696 -18.85372 -18.02874 -17.47502 -17.02591 -16.93563 -16.72520 -16.67983 -16.06760 -15.62652 -15.01545 -14.96915 -14.87186 -14.23680 -14.23524 -14.13643 -13.89071 -13.62556 -13.37177 -12.92358 -12.86910 -12.75302 -12.67579 -12.28378 -12.22841 -11.75161 -11.59377 -11.47423 -11.06244 -10.94005 -10.83565 -9.91084 -9.41035 -8.30459 -8.11492 -6.47118 0.53720 0.71966 1.43607 1.44518 1.58116 1.61813 2.06745 2.33331 2.41885 2.78955 2.98795 3.04956 3.82032 3.93284 4.06366 4.10548 4.28412 4.32387 4.33482 4.39770 4.40197 4.59832 4.67107 4.81771 4.92331 4.99101 5.08113 5.18740 5.20923 5.29914 5.43924 5.51863 5.63215 5.75084 5.81979 5.96274 6.15498 6.56500 6.64049 6.78310 6.84571 7.21103 7.39051 8.82019 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026175 B = 0.003073 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.473002 B = 9110.423455 C =10148.845408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.346 6.346 4 C 0.032 3.968 5 C -0.167 4.167 6 C -0.146 4.146 7 C -0.107 4.107 8 C -0.177 4.177 9 C 0.173 3.827 10 N -0.744 5.744 11 C 0.122 3.878 12 C 0.490 3.510 13 O -0.598 6.598 14 N -0.699 5.699 15 C 0.265 3.735 16 C -0.554 4.554 17 H 0.087 0.913 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.986 3.014 21 H -0.251 1.251 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.104 0.896 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.402 0.598 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.413 0.587 37 H -0.012 1.012 38 H -0.012 1.012 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.142 -21.591 0.002 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.262 6.262 4 C -0.016 4.016 5 C -0.186 4.186 6 C -0.166 4.166 7 C -0.125 4.125 8 C -0.200 4.200 9 C 0.070 3.930 10 N -0.377 5.377 11 C -0.006 4.006 12 C 0.277 3.723 13 O -0.480 6.480 14 N -0.349 5.349 15 C 0.142 3.858 16 C -0.592 4.592 17 H 0.105 0.895 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.809 3.191 21 H -0.174 1.174 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.123 0.877 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.161 0.839 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.238 0.762 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.249 0.751 37 H 0.006 0.994 38 H 0.006 0.994 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.103 -21.416 0.002 24.599 hybrid contribution -0.571 0.916 -0.002 1.079 sum 11.532 -20.500 0.000 23.521 Atomic orbital electron populations 1.21815 0.92463 1.04019 1.02595 1.22927 0.96155 0.81026 1.02065 1.86020 1.19171 1.31026 1.89948 1.18751 0.83050 0.93114 1.06706 1.21253 0.94595 0.97368 1.05420 1.21064 0.93986 0.98173 1.03410 1.21165 1.00569 0.91605 0.99191 1.20830 0.89516 1.01218 1.08472 1.17576 0.91040 0.84335 1.00002 1.44351 1.08486 1.01869 1.83010 1.21076 0.93313 0.80698 1.05464 1.21299 0.90715 0.84367 0.75912 1.90643 1.24072 1.80552 1.52765 1.46080 1.11573 1.05067 1.72191 1.18581 0.85996 0.86978 0.94202 1.21652 0.94607 0.90218 1.52738 0.89477 1.26085 0.94977 1.04799 0.93868 1.70149 1.04292 1.32567 1.50057 0.85094 0.79307 0.77112 0.77598 1.17405 1.20554 1.20563 0.87748 0.92650 0.92644 0.91118 0.91119 0.83918 0.83650 0.83328 0.83817 0.76189 0.86858 0.86852 0.75064 0.99380 0.99384 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.05 0.99 5.46 71.98 0.39 1.39 16 3 O -0.35 -9.67 9.38 -93.59 -0.88 -10.55 16 4 C 0.03 0.84 6.70 22.59 0.15 0.99 16 5 C -0.17 -3.40 9.04 22.35 0.20 -3.19 16 6 C -0.15 -2.52 10.04 22.28 0.22 -2.29 16 7 C -0.11 -1.86 10.04 22.27 0.22 -1.64 16 8 C -0.18 -3.80 9.31 22.38 0.21 -3.59 16 9 C 0.17 4.73 6.67 38.22 0.25 4.99 16 10 N -0.74 -23.18 5.70 -342.68 -1.95 -25.13 16 11 C 0.12 3.36 5.40 85.63 0.46 3.82 16 12 C 0.49 19.49 7.90 87.66 0.69 20.18 16 13 O -0.60 -29.94 15.67 -3.03 -0.05 -29.98 16 14 N -0.70 -28.75 5.55 -466.80 -2.59 -31.34 16 15 C 0.27 14.47 5.43 85.64 0.46 14.93 16 16 C -0.55 -29.77 9.28 25.60 0.24 -29.54 16 17 H 0.09 4.18 7.60 -2.91 -0.02 4.16 16 18 C 0.00 0.12 5.46 84.65 0.46 0.58 16 19 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 20 Si 0.99 41.99 29.54 68.60 2.03 44.02 16 21 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 24 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.07 1.11 7.67 -2.39 -0.02 1.09 16 28 H 0.07 1.11 7.66 -2.38 -0.02 1.09 16 29 H 0.14 2.20 6.30 -2.91 -0.02 2.18 16 30 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.14 2.48 6.74 -2.91 -0.02 2.46 16 33 H 0.40 14.86 6.80 -92.71 -0.63 14.23 16 34 H 0.11 2.49 7.95 -2.39 -0.02 2.47 16 35 H 0.11 2.49 7.95 -2.39 -0.02 2.47 16 36 H 0.41 13.49 8.32 -92.71 -0.77 12.72 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 38 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -74.35 333.57 1.23 -73.12 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -0.33 Total: 31.02 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 4.72 Total: 4.79 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -4.26 Total: -112.41 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.93 Total: -40.53 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -74.35 1.23 -73.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020041362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.465 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds