Wall clock time and date at job start Tue Mar 31 2020 00:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47258 * 2 1 4 4 C 1.36936 * 119.99985 * 274.35279 * 3 2 1 5 5 H 1.08001 * 120.00149 * 318.49883 * 4 3 2 6 6 C 1.38814 * 119.99715 * 138.50434 * 4 3 2 7 7 N 1.31616 * 119.99773 * 161.85831 * 6 4 3 8 8 Si 1.86797 * 120.00130 * 341.85447 * 6 4 3 9 9 H 1.48501 * 109.47201 * 95.30569 * 8 6 4 10 10 H 1.48505 * 109.47011 * 215.30588 * 8 6 4 11 11 H 1.48504 * 109.47090 * 335.30418 * 8 6 4 12 12 C 1.46506 * 119.99759 * 94.35097 * 3 2 1 13 13 C 1.50702 * 109.46913 * 90.00075 * 12 3 2 14 14 O 1.21295 * 119.99894 * 0.02562 * 13 12 3 15 15 N 1.34779 * 119.99778 * 179.97438 * 13 12 3 16 16 C 1.40118 * 119.99912 * 184.76511 * 15 13 12 17 17 C 1.38728 * 120.09008 * 22.09527 * 16 15 13 18 18 C 1.38200 * 119.98445 * 179.97438 * 17 16 15 19 19 C 1.38272 * 120.16256 * 0.02562 * 18 17 16 20 20 C 1.38244 * 120.18394 * 359.97307 * 19 18 17 21 21 C 1.38557 * 120.00970 * 359.97438 * 20 19 18 22 22 O 1.35977 * 120.07613 * 180.02562 * 21 20 19 23 23 C 1.42895 * 117.00467 * 0.02562 * 22 21 20 24 24 H 1.08994 * 109.47339 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47031 * 299.99951 * 1 2 3 26 26 H 1.09001 * 109.47224 * 59.99850 * 1 2 3 27 27 H 1.08998 * 109.47031 * 240.00049 * 2 1 3 28 28 H 1.09001 * 109.47224 * 120.00150 * 2 1 3 29 29 H 0.97003 * 119.99912 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47042 * 330.00279 * 12 3 2 31 31 H 1.08995 * 109.46751 * 210.00124 * 12 3 2 32 32 H 0.96994 * 119.99774 * 4.76317 * 15 13 12 33 33 H 1.08003 * 120.00387 * 0.24947 * 17 16 15 34 34 H 1.07993 * 119.91503 * 179.97438 * 18 17 16 35 35 H 1.08004 * 119.90804 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.99601 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.47283 * 299.99890 * 23 22 21 38 38 H 1.09004 * 109.47253 * 60.00142 * 23 22 21 39 39 H 1.09003 * 109.47246 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1617 2.0567 -1.1825 5 1 2.5736 1.5541 -2.0451 6 6 1.7778 3.3877 -1.2724 7 7 2.2259 4.1367 -2.2575 8 14 0.6251 4.1156 0.0046 9 1 1.4201 4.7914 1.0612 10 1 -0.2743 5.1024 -0.6456 11 1 -0.1872 3.0316 0.6134 12 6 2.3533 2.0397 1.2651 13 6 3.8038 1.7932 1.5911 14 8 4.4904 1.1329 0.8402 15 7 4.3384 2.3074 2.7164 16 6 5.7089 2.1635 2.9702 17 6 6.5886 1.9245 1.9244 18 6 7.9399 1.7834 2.1772 19 6 8.4185 1.8794 3.4709 20 6 7.5480 2.1174 4.5181 21 6 6.1919 2.2611 4.2730 22 8 5.3346 2.4957 5.3020 23 6 5.9006 2.5829 6.6112 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.9579 5.0669 -2.3201 30 1 1.7282 1.6358 2.0616 31 1 2.1784 3.1117 1.1742 32 1 3.7744 2.7770 3.3506 33 1 6.2179 1.8531 0.9125 34 1 8.6236 1.5970 1.3623 35 1 9.4753 1.7680 3.6637 36 1 7.9252 2.1921 5.5274 37 1 6.4001 1.6451 6.8543 38 1 6.6237 3.3980 6.6409 39 1 5.1099 2.7726 7.3371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030960367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:03 Heat of formation + Delta-G solvation = -9.515651 kcal Electronic energy + Delta-G solvation = -21910.489291 eV Core-core repulsion = 18627.032409 eV Total energy + Delta-G solvation = -3283.456882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.49764 -38.97230 -37.14298 -35.79630 -34.19771 -31.91090 -30.50913 -29.97512 -29.32237 -27.38589 -26.55851 -23.87480 -22.70095 -22.04936 -20.55545 -19.73626 -18.36151 -17.40218 -16.70051 -16.46149 -15.86399 -15.53248 -15.33620 -14.72806 -14.52312 -14.09510 -13.88287 -13.46526 -13.38254 -13.14494 -12.72466 -12.63725 -12.21429 -11.97450 -11.77185 -11.49912 -11.37656 -11.24306 -11.11582 -10.89836 -10.61423 -10.26908 -10.10758 -9.99701 -9.64472 -9.07500 -8.56805 -8.41072 -7.52318 -6.85201 -6.01045 -3.49223 1.47786 1.54298 3.17369 3.19577 3.26042 3.40794 3.45131 3.52997 4.01956 4.44836 4.81327 4.92440 4.97103 5.00345 5.11052 5.21704 5.29470 5.34314 5.53786 5.56673 5.80375 5.90378 5.96028 6.04999 6.09344 6.26333 6.30344 6.36106 6.41440 6.52036 6.67817 6.82571 6.85089 7.04062 7.08900 7.47071 7.84458 8.05262 8.42280 8.76582 8.95974 9.64925 10.04894 11.14067 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.005091 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.420322 B = 5498.196751 C = 5623.953973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.150 3.850 3 N -0.579 5.579 4 C -0.259 4.259 5 H 0.080 0.920 6 C 0.035 3.965 7 N -0.897 5.897 8 Si 0.871 3.129 9 H -0.286 1.286 10 H -0.297 1.297 11 H -0.261 1.261 12 C 0.120 3.880 13 C 0.484 3.516 14 O -0.499 6.499 15 N -0.677 5.677 16 C 0.140 3.860 17 C -0.105 4.105 18 C -0.131 4.131 19 C -0.116 4.116 20 C -0.189 4.189 21 C 0.081 3.919 22 O -0.321 6.321 23 C 0.032 3.968 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.264 0.736 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.408 0.592 33 H 0.162 0.838 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.677 -3.196 16.975 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.025 3.975 3 N -0.299 5.299 4 C -0.388 4.388 5 H 0.097 0.903 6 C -0.166 4.166 7 N -0.538 5.538 8 Si 0.701 3.299 9 H -0.214 1.214 10 H -0.225 1.225 11 H -0.186 1.186 12 C -0.011 4.011 13 C 0.270 3.730 14 O -0.371 6.371 15 N -0.323 5.323 16 C 0.043 3.957 17 C -0.125 4.125 18 C -0.150 4.150 19 C -0.135 4.135 20 C -0.209 4.209 21 C 0.034 3.966 22 O -0.235 6.235 23 C -0.063 4.063 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.243 0.757 33 H 0.179 0.821 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.826 -3.518 16.213 17.940 hybrid contribution -0.502 0.951 1.297 1.685 sum 6.324 -2.567 17.511 18.794 Atomic orbital electron populations 1.22307 0.99209 0.99347 1.01819 1.20856 0.91679 0.85567 0.99447 1.43787 1.72668 1.11724 1.01699 1.18778 1.36474 0.94498 0.89094 0.90250 1.25578 0.97620 0.96956 0.96409 1.69838 1.43855 1.06942 1.33164 0.86994 0.82612 0.78882 0.81451 1.21395 1.22476 1.18563 1.21413 0.88998 0.99614 0.91082 1.23333 0.92941 0.77722 0.78968 1.90536 1.62001 1.37002 1.47576 1.44049 1.06390 1.57221 1.24622 1.17382 0.84972 1.03285 0.90025 1.21649 0.92048 0.98558 1.00252 1.21026 0.95182 1.02047 0.96719 1.20828 0.99067 1.01065 0.92517 1.20933 0.91731 1.08177 1.00022 1.18685 0.89389 1.02204 0.86365 1.85993 1.35100 1.87463 1.14953 1.22979 1.00273 1.01074 0.81999 0.94075 0.94002 0.92230 0.92881 0.94326 0.92626 0.90905 0.89978 0.75664 0.82075 0.85767 0.86204 0.85666 0.92878 0.92880 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 10.22 37.16 0.38 -2.68 16 2 C 0.15 3.07 6.39 -4.04 -0.03 3.05 16 3 N -0.58 -13.83 1.52 -174.60 -0.26 -14.10 16 4 C -0.26 -7.30 9.92 -15.06 -0.15 -7.45 16 5 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 6 C 0.04 1.00 5.35 -17.43 -0.09 0.91 16 7 N -0.90 -27.37 13.97 55.49 0.78 -26.59 16 8 Si 0.87 21.20 24.94 -169.99 -4.24 16.96 16 9 H -0.29 -6.65 6.74 56.52 0.38 -6.27 16 10 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 11 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.12 2.54 4.92 -5.19 -0.03 2.52 16 13 C 0.48 10.18 7.74 -10.98 -0.08 10.10 16 14 O -0.50 -12.01 13.43 5.54 0.07 -11.93 16 15 N -0.68 -12.00 5.31 -9.75 -0.05 -12.05 16 16 C 0.14 2.43 6.49 -83.50 -0.54 1.89 16 17 C -0.10 -1.87 8.75 -39.41 -0.34 -2.22 16 18 C -0.13 -1.91 10.04 -39.58 -0.40 -2.31 16 19 C -0.12 -1.45 10.04 -39.57 -0.40 -1.85 16 20 C -0.19 -2.37 9.04 -39.46 -0.36 -2.73 16 21 C 0.08 1.18 6.70 -39.07 -0.26 0.92 16 22 O -0.32 -4.17 9.88 -19.67 -0.19 -4.36 16 23 C 0.03 0.27 9.81 101.05 0.99 1.26 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 1.12 8.07 -51.93 -0.42 0.70 16 28 H 0.04 0.72 8.04 -51.93 -0.42 0.31 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.08 1.85 3.48 -51.93 -0.18 1.67 16 32 H 0.41 6.17 8.29 -40.82 -0.34 5.83 16 33 H 0.16 3.35 5.57 -52.48 -0.29 3.06 16 34 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 36 H 0.13 1.19 6.30 -52.48 -0.33 0.86 16 37 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 38 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -33.13 323.60 -5.64 -38.77 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.31 Total: 7.01 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -1.31 Total: 1.41 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.46 Total: -52.74 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.12 Total: -16.29 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.24 Total: 16.96 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.13 -5.64 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030960367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.250 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds