Wall clock time and date at job start Tue Mar 31 2020 00:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47258 * 2 1 4 4 C 1.36936 * 119.99985 * 274.35279 * 3 2 1 5 5 H 1.08001 * 120.00149 * 318.49883 * 4 3 2 6 6 C 1.38814 * 119.99715 * 138.50434 * 4 3 2 7 7 N 1.31616 * 119.99773 * 161.85831 * 6 4 3 8 8 Si 1.86797 * 120.00130 * 341.85447 * 6 4 3 9 9 H 1.48501 * 109.47201 * 95.30569 * 8 6 4 10 10 H 1.48505 * 109.47011 * 215.30588 * 8 6 4 11 11 H 1.48504 * 109.47090 * 335.30418 * 8 6 4 12 12 C 1.46506 * 119.99759 * 94.35097 * 3 2 1 13 13 C 1.50702 * 109.46913 * 90.00075 * 12 3 2 14 14 O 1.21295 * 119.99894 * 0.02562 * 13 12 3 15 15 N 1.34779 * 119.99778 * 179.97438 * 13 12 3 16 16 C 1.40118 * 119.99912 * 184.76511 * 15 13 12 17 17 C 1.38728 * 120.09008 * 22.09527 * 16 15 13 18 18 C 1.38200 * 119.98445 * 179.97438 * 17 16 15 19 19 C 1.38272 * 120.16256 * 0.02562 * 18 17 16 20 20 C 1.38244 * 120.18394 * 359.97307 * 19 18 17 21 21 C 1.38557 * 120.00970 * 359.97438 * 20 19 18 22 22 O 1.35977 * 120.07613 * 180.02562 * 21 20 19 23 23 C 1.42895 * 117.00467 * 0.02562 * 22 21 20 24 24 H 1.08994 * 109.47339 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47031 * 299.99951 * 1 2 3 26 26 H 1.09001 * 109.47224 * 59.99850 * 1 2 3 27 27 H 1.08998 * 109.47031 * 240.00049 * 2 1 3 28 28 H 1.09001 * 109.47224 * 120.00150 * 2 1 3 29 29 H 0.97003 * 119.99912 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47042 * 330.00279 * 12 3 2 31 31 H 1.08995 * 109.46751 * 210.00124 * 12 3 2 32 32 H 0.96994 * 119.99774 * 4.76317 * 15 13 12 33 33 H 1.08003 * 120.00387 * 0.24947 * 17 16 15 34 34 H 1.07993 * 119.91503 * 179.97438 * 18 17 16 35 35 H 1.08004 * 119.90804 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.99601 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.47283 * 299.99890 * 23 22 21 38 38 H 1.09004 * 109.47253 * 60.00142 * 23 22 21 39 39 H 1.09003 * 109.47246 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1617 2.0567 -1.1825 5 1 2.5736 1.5541 -2.0451 6 6 1.7778 3.3877 -1.2724 7 7 2.2259 4.1367 -2.2575 8 14 0.6251 4.1156 0.0046 9 1 1.4201 4.7914 1.0612 10 1 -0.2743 5.1024 -0.6456 11 1 -0.1872 3.0316 0.6134 12 6 2.3533 2.0397 1.2651 13 6 3.8038 1.7932 1.5911 14 8 4.4904 1.1329 0.8402 15 7 4.3384 2.3074 2.7164 16 6 5.7089 2.1635 2.9702 17 6 6.5886 1.9245 1.9244 18 6 7.9399 1.7834 2.1772 19 6 8.4185 1.8794 3.4709 20 6 7.5480 2.1174 4.5181 21 6 6.1919 2.2611 4.2730 22 8 5.3346 2.4957 5.3020 23 6 5.9006 2.5829 6.6112 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.9579 5.0669 -2.3201 30 1 1.7282 1.6358 2.0616 31 1 2.1784 3.1117 1.1742 32 1 3.7744 2.7770 3.3506 33 1 6.2179 1.8531 0.9125 34 1 8.6236 1.5970 1.3623 35 1 9.4753 1.7680 3.6637 36 1 7.9252 2.1921 5.5274 37 1 6.4001 1.6451 6.8543 38 1 6.6237 3.3980 6.6409 39 1 5.1099 2.7726 7.3371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000030960367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:02 Heat of formation + Delta-G solvation = -32.670438 kcal Electronic energy + Delta-G solvation = -21911.493358 eV Core-core repulsion = 18627.032409 eV Total energy + Delta-G solvation = -3284.460949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.74665 -40.32381 -38.30414 -37.50306 -35.67038 -34.00670 -32.01922 -31.12218 -30.66892 -28.55899 -27.91567 -25.73595 -23.98903 -23.16015 -22.18107 -21.36853 -19.64706 -18.91941 -18.11483 -18.02268 -17.26761 -16.82051 -16.51455 -16.15673 -15.95278 -15.60185 -15.30690 -14.97433 -14.93170 -14.55469 -14.39786 -13.86261 -13.69175 -13.46177 -13.13082 -13.02792 -12.62903 -12.58627 -12.39187 -12.16719 -12.09255 -11.98419 -11.68079 -11.59928 -11.51438 -10.80456 -10.56417 -9.56826 -8.80194 -8.73461 -8.20303 -5.68832 0.29568 0.42301 1.26945 1.41511 1.53381 1.75030 2.05190 2.34904 2.39950 2.84657 3.04879 3.30145 3.83249 3.96344 4.03216 4.28668 4.31938 4.35414 4.38417 4.43548 4.45740 4.50486 4.61063 4.77003 4.78536 4.81174 4.86660 5.04622 5.15343 5.25814 5.32549 5.53745 5.55372 5.62665 5.86122 5.91525 6.18658 6.43372 6.49464 6.91172 7.27442 7.54972 7.96548 8.99182 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.005091 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.420322 B = 5498.196751 C = 5623.953973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 N -0.591 5.591 4 C -0.255 4.255 5 H 0.023 0.977 6 C -0.024 4.024 7 N -0.953 5.953 8 Si 0.944 3.056 9 H -0.266 1.266 10 H -0.305 1.305 11 H -0.234 1.234 12 C 0.116 3.884 13 C 0.482 3.518 14 O -0.542 6.542 15 N -0.664 5.664 16 C 0.102 3.898 17 C -0.133 4.133 18 C -0.142 4.142 19 C -0.100 4.100 20 C -0.183 4.183 21 C 0.088 3.912 22 O -0.335 6.335 23 C 0.020 3.980 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.033 0.967 28 H 0.060 0.940 29 H 0.264 0.736 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.421 0.579 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.827 -3.267 21.777 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 N -0.312 5.312 4 C -0.385 4.385 5 H 0.041 0.959 6 C -0.221 4.221 7 N -0.596 5.596 8 Si 0.770 3.230 9 H -0.192 1.192 10 H -0.233 1.233 11 H -0.157 1.157 12 C -0.014 4.014 13 C 0.269 3.731 14 O -0.418 6.418 15 N -0.310 5.310 16 C 0.006 3.994 17 C -0.154 4.154 18 C -0.161 4.161 19 C -0.118 4.118 20 C -0.202 4.202 21 C 0.041 3.959 22 O -0.249 6.249 23 C -0.074 4.074 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.136 0.864 31 H 0.091 0.909 32 H 0.258 0.742 33 H 0.137 0.863 34 H 0.154 0.846 35 H 0.177 0.823 36 H 0.183 0.817 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.985 -3.606 21.098 22.515 hybrid contribution -0.345 0.897 -0.103 0.966 sum 6.640 -2.709 20.995 22.186 Atomic orbital electron populations 1.22167 0.96780 1.01433 1.01126 1.20986 0.93543 0.83855 0.99591 1.43846 1.73511 1.12665 1.01208 1.18487 1.35595 0.94774 0.89624 0.95884 1.26309 0.99117 0.97260 0.99365 1.70008 1.45817 1.07406 1.36363 0.85836 0.79953 0.78414 0.78842 1.19244 1.23331 1.15702 1.21521 0.89875 0.99043 0.90944 1.23130 0.92816 0.77666 0.79508 1.90545 1.62809 1.39241 1.49211 1.43677 1.07126 1.56483 1.23719 1.17541 0.84329 1.05988 0.91506 1.21423 0.94029 1.01108 0.98803 1.21221 0.93910 1.02292 0.98670 1.21273 1.01085 0.98301 0.91169 1.21412 0.90628 1.06236 1.01908 1.18712 0.90437 1.00974 0.85799 1.85982 1.35687 1.87047 1.16215 1.23362 1.01720 1.02380 0.79942 0.90657 0.92804 0.94615 0.94884 0.92137 0.92708 0.86423 0.90949 0.74196 0.86320 0.84585 0.82263 0.81745 0.91531 0.91419 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.39 10.22 71.98 0.74 -4.66 16 2 C 0.14 5.91 6.39 86.38 0.55 6.46 16 3 N -0.59 -28.66 1.52 -706.32 -1.07 -29.73 16 4 C -0.25 -15.11 9.92 84.03 0.83 -14.27 16 5 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 6 C -0.02 -1.45 5.35 84.86 0.45 -0.99 16 7 N -0.95 -61.14 13.97 21.65 0.30 -60.84 16 8 Si 0.94 44.05 24.94 68.60 1.71 45.76 16 9 H -0.27 -11.46 6.74 99.48 0.67 -10.79 16 10 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 11 H -0.23 -9.82 7.11 99.48 0.71 -9.12 16 12 C 0.12 4.81 4.92 85.63 0.42 5.23 16 13 C 0.48 20.63 7.74 87.66 0.68 21.31 16 14 O -0.54 -27.60 13.43 -3.08 -0.04 -27.64 16 15 N -0.66 -23.37 5.31 -303.13 -1.61 -24.98 16 16 C 0.10 3.53 6.49 38.19 0.25 3.77 16 17 C -0.13 -4.95 8.75 22.38 0.20 -4.76 16 18 C -0.14 -4.07 10.04 22.27 0.22 -3.84 16 19 C -0.10 -2.15 10.04 22.28 0.22 -1.93 16 20 C -0.18 -3.84 9.04 22.35 0.20 -3.64 16 21 C 0.09 2.37 6.70 22.60 0.15 2.52 16 22 O -0.34 -7.60 9.88 -93.29 -0.92 -8.52 16 23 C 0.02 0.24 9.81 113.37 1.11 1.36 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 28 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 29 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.12 3.79 8.07 -2.39 -0.02 3.77 16 31 H 0.07 3.16 3.48 -2.39 -0.01 3.15 16 32 H 0.42 12.13 8.29 -92.71 -0.77 11.36 16 33 H 0.12 5.42 5.57 -2.91 -0.02 5.41 16 34 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 35 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.17 2.15 6.30 -2.91 -0.02 2.13 16 37 H 0.07 0.65 7.66 -2.39 -0.02 0.64 16 38 H 0.07 0.65 7.66 -2.38 -0.02 0.63 16 39 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -78.79 323.60 4.66 -74.13 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.26 Total: 25.25 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 6.03 Total: 6.57 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -2.38 Total: -115.55 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.96 Total: -36.16 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.71 Total: 45.76 kcal Total: -78.79 4.66 -74.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030960367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.463 kcal (2) G-P(sol) polarization free energy of solvation -78.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds