Wall clock time and date at job start Tue Mar 31 2020 00:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.46953 * 2 1 4 4 C 1.46894 * 111.00050 * 67.16624 * 3 2 1 5 5 C 1.50697 * 109.47610 * 71.63173 * 4 3 2 6 6 H 1.08002 * 119.99861 * 5.05322 * 5 4 3 7 7 C 1.37873 * 120.00555 * 185.06193 * 5 4 3 8 8 N 1.31520 * 119.99756 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00217 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47194 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47081 * 119.99803 * 9 7 5 12 12 H 1.48508 * 109.47062 * 239.99750 * 9 7 5 13 13 C 1.46898 * 111.00177 * 303.20639 * 3 2 1 14 14 C 1.50698 * 109.47390 * 289.16401 * 13 3 2 15 15 C 1.38252 * 120.00415 * 102.55301 * 14 13 3 16 16 C 1.38208 * 120.00218 * 179.97438 * 15 14 13 17 17 C 1.38261 * 120.00166 * 359.97438 * 16 15 14 18 18 C 1.38213 * 119.99493 * 359.96666 * 17 16 15 19 19 N 1.48020 * 119.99796 * 179.97438 * 18 17 16 20 20 O 1.21805 * 120.00249 * 353.07553 * 19 18 17 21 21 O 1.21796 * 120.00109 * 173.07306 * 19 18 17 22 22 C 1.38218 * 119.99271 * 282.45935 * 14 13 3 23 23 C 1.50691 * 120.00522 * 0.08835 * 22 14 13 24 24 H 1.09009 * 109.46787 * 306.49307 * 1 2 3 25 25 H 1.09001 * 109.47353 * 66.49206 * 1 2 3 26 26 H 1.08996 * 109.47503 * 186.49347 * 1 2 3 27 27 H 1.09000 * 109.47041 * 240.00147 * 2 1 3 28 28 H 1.09002 * 109.46971 * 119.99694 * 2 1 3 29 29 H 1.09005 * 109.47122 * 191.62996 * 4 3 2 30 30 H 1.09002 * 109.47522 * 311.62331 * 4 3 2 31 31 H 0.96996 * 119.99679 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.47190 * 169.15543 * 13 3 2 33 33 H 1.09010 * 109.46944 * 49.15935 * 13 3 2 34 34 H 1.08001 * 119.99669 * 0.25255 * 15 14 13 35 35 H 1.08004 * 120.00419 * 179.97438 * 16 15 14 36 36 H 1.07998 * 120.00096 * 179.97438 * 17 16 15 37 37 H 1.09006 * 109.47224 * 263.26248 * 23 22 14 38 38 H 1.08998 * 109.47113 * 23.26491 * 23 22 14 39 39 H 1.09002 * 109.47075 * 143.26181 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6934 2.0587 1.2639 5 6 2.5554 1.5016 2.3673 6 1 3.3294 0.7842 2.1379 7 6 2.3559 1.9076 3.6697 8 7 1.4136 2.7815 3.9491 9 14 3.4240 1.2165 5.0375 10 1 4.4028 0.2577 4.4648 11 1 4.1503 2.3255 5.7068 12 1 2.5677 0.5164 6.0285 13 6 1.4870 2.1317 -1.1474 14 6 2.1321 1.6328 -2.4147 15 6 1.4382 0.7823 -3.2552 16 6 2.0297 0.3252 -4.4177 17 6 3.3151 0.7189 -4.7404 18 6 4.0084 1.5701 -3.9007 19 7 5.3848 1.9912 -4.2458 20 8 5.9533 1.4916 -5.2002 21 8 5.9490 2.8373 -3.5755 22 6 3.4169 2.0272 -2.7376 23 6 4.1732 2.9543 -1.8216 24 1 -0.3633 0.6112 0.8262 25 1 -0.3634 0.4099 -0.9424 26 1 -0.3634 -1.0210 0.1162 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8779 3.1283 1.1637 30 1 0.6432 1.8922 1.5039 31 1 1.2731 3.0669 4.8654 32 1 1.7036 3.1926 -1.0227 33 1 0.4084 1.9856 -1.2070 34 1 0.4322 0.4786 -3.0056 35 1 1.4877 -0.3396 -5.0741 36 1 3.7775 0.3614 -5.6486 37 1 4.0763 3.9789 -2.1808 38 1 3.7645 2.8824 -0.8137 39 1 5.2260 2.6723 -1.8077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:09 Heat of formation + Delta-G solvation = 26.705557 kcal Electronic energy + Delta-G solvation = -21978.546195 eV Core-core repulsion = 18696.659982 eV Total energy + Delta-G solvation = -3281.886213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.12554 -39.88116 -37.21437 -36.52850 -33.20991 -32.85527 -32.07900 -29.62454 -28.17022 -27.05205 -25.79809 -24.92083 -23.19454 -22.15224 -21.34428 -19.56994 -18.52360 -18.36825 -17.46606 -16.33513 -16.21769 -16.00954 -15.21658 -14.85296 -14.24138 -14.18553 -13.62974 -13.42290 -13.04906 -12.63785 -12.44876 -12.29186 -12.14473 -11.99990 -11.64264 -11.36172 -11.31025 -11.12022 -11.05884 -10.99362 -10.70988 -10.64614 -10.36662 -10.25329 -9.87660 -9.49661 -9.33004 -8.89714 -8.50121 -7.39484 -6.10025 -4.11354 -0.03525 0.97041 1.44408 1.54895 3.26495 3.26941 3.35224 3.40032 4.34631 4.39211 4.43505 4.66115 4.80979 4.90820 5.02288 5.13957 5.25940 5.48056 5.54417 5.58530 5.67865 5.82068 5.85934 5.88080 5.91259 5.96929 6.11495 6.19884 6.28970 6.37686 6.46366 6.50194 6.71646 6.77573 7.12003 7.28554 7.71789 7.79756 7.95154 8.04697 8.41109 8.97094 9.53643 11.00330 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.004892 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.789552 B = 5721.857279 C = 6600.013206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 N -0.528 5.528 4 C 0.188 3.812 5 C -0.505 4.505 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.081 3.919 14 C -0.065 4.065 15 C -0.063 4.063 16 C -0.130 4.130 17 C -0.063 4.063 18 C -0.054 4.054 19 N 0.036 4.964 20 O -0.183 6.183 21 O -0.155 6.155 22 C 0.014 3.986 23 C -0.141 4.141 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.026 0.974 30 H 0.006 0.994 31 H 0.261 0.739 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -3.584 -15.282 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.070 4.070 3 N -0.251 5.251 4 C 0.064 3.936 5 C -0.544 4.544 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.212 1.212 13 C -0.047 4.047 14 C -0.067 4.067 15 C -0.081 4.081 16 C -0.148 4.148 17 C -0.082 4.082 18 C -0.137 4.137 19 N 0.551 4.449 20 O -0.394 6.394 21 O -0.371 6.371 22 C 0.012 3.988 23 C -0.197 4.197 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.044 0.956 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.009 -3.699 -15.010 15.589 hybrid contribution -0.088 -0.294 0.719 0.782 sum -2.097 -3.993 -14.291 14.986 Atomic orbital electron populations 1.22423 0.99346 1.01640 1.01449 1.21996 0.91975 0.91360 1.01668 1.62377 1.57912 1.01725 1.03117 1.19850 0.95805 0.93958 0.84024 1.21148 1.17144 1.25255 0.90827 0.91838 1.24964 0.95491 0.95234 0.98777 1.69956 1.32147 1.32053 1.19647 0.86472 0.80374 0.78940 0.81840 1.19664 1.20966 1.21157 1.21135 0.96383 0.98961 0.88181 1.19996 0.92596 0.96996 0.97096 1.21564 1.00250 0.93541 0.92792 1.21060 0.94160 1.01607 0.98012 1.20920 0.94454 0.93938 0.98926 1.20989 0.83972 1.08037 1.00751 1.43597 1.02868 0.99129 0.99325 1.94497 1.67078 1.57826 1.19959 1.94496 1.67960 1.25623 1.48996 1.19815 0.93554 0.94202 0.91185 1.21427 1.01304 0.96963 1.00020 0.91321 0.93756 0.93080 0.93100 0.89768 0.95580 0.97666 0.92948 0.89726 0.93426 0.84507 0.84074 0.83582 0.90143 0.87782 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.91 9.16 37.16 0.34 -2.57 16 2 C 0.06 1.01 5.75 -3.82 -0.02 0.99 16 3 N -0.53 -9.98 3.83 -237.52 -0.91 -10.89 16 4 C 0.19 4.42 4.62 -4.98 -0.02 4.40 16 5 C -0.51 -13.33 8.41 -34.44 -0.29 -13.62 16 6 H 0.06 1.70 7.69 -52.49 -0.40 1.29 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 9 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.08 1.26 3.99 -4.98 -0.02 1.24 16 14 C -0.07 -0.89 4.68 -104.63 -0.49 -1.38 16 15 C -0.06 -0.69 9.12 -39.59 -0.36 -1.05 16 16 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 17 C -0.06 -0.72 9.56 -39.58 -0.38 -1.10 16 18 C -0.05 -0.77 6.83 -79.95 -0.55 -1.31 16 19 N 0.04 0.56 4.45 33.96 0.15 0.71 16 20 O -0.18 -2.91 18.47 -29.46 -0.54 -3.45 16 21 O -0.15 -2.55 15.37 -29.46 -0.45 -3.00 16 22 C 0.01 0.21 5.88 -104.63 -0.62 -0.41 16 23 C -0.14 -2.15 8.12 36.00 0.29 -1.86 16 24 H 0.07 1.24 6.15 -51.92 -0.32 0.92 16 25 H 0.04 0.58 5.79 -51.93 -0.30 0.28 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.80 7.12 -51.93 -0.37 0.43 16 28 H 0.08 1.65 7.22 -51.93 -0.37 1.28 16 29 H 0.03 0.66 7.75 -51.93 -0.40 0.25 16 30 H 0.01 0.14 6.00 -51.93 -0.31 -0.17 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.08 1.33 6.93 -51.93 -0.36 0.97 16 33 H 0.05 0.69 5.66 -51.92 -0.29 0.39 16 34 H 0.14 1.24 7.31 -52.49 -0.38 0.85 16 35 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.15 1.41 7.63 -52.49 -0.40 1.01 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.10 1.78 5.95 -51.93 -0.31 1.47 16 39 H 0.09 1.48 5.87 -51.93 -0.30 1.17 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -28.82 317.62 -8.80 -37.62 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.94 Total: -0.16 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -2.61 Total: -16.86 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.02 Total: -34.96 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -1.00 Total: -6.45 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.82 -8.80 -37.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.321 kcal (2) G-P(sol) polarization free energy of solvation -28.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds