Wall clock time and date at job start Tue Mar 31 2020 00:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.46953 * 2 1 4 4 C 1.46894 * 111.00050 * 67.16624 * 3 2 1 5 5 C 1.50697 * 109.47610 * 71.63173 * 4 3 2 6 6 H 1.08002 * 119.99861 * 5.05322 * 5 4 3 7 7 C 1.37873 * 120.00555 * 185.06193 * 5 4 3 8 8 N 1.31520 * 119.99756 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00217 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47194 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47081 * 119.99803 * 9 7 5 12 12 H 1.48508 * 109.47062 * 239.99750 * 9 7 5 13 13 C 1.46898 * 111.00177 * 303.20639 * 3 2 1 14 14 C 1.50698 * 109.47390 * 289.16401 * 13 3 2 15 15 C 1.38252 * 120.00415 * 102.55301 * 14 13 3 16 16 C 1.38208 * 120.00218 * 179.97438 * 15 14 13 17 17 C 1.38261 * 120.00166 * 359.97438 * 16 15 14 18 18 C 1.38213 * 119.99493 * 359.96666 * 17 16 15 19 19 N 1.48020 * 119.99796 * 179.97438 * 18 17 16 20 20 O 1.21805 * 120.00249 * 353.07553 * 19 18 17 21 21 O 1.21796 * 120.00109 * 173.07306 * 19 18 17 22 22 C 1.38218 * 119.99271 * 282.45935 * 14 13 3 23 23 C 1.50691 * 120.00522 * 0.08835 * 22 14 13 24 24 H 1.09009 * 109.46787 * 306.49307 * 1 2 3 25 25 H 1.09001 * 109.47353 * 66.49206 * 1 2 3 26 26 H 1.08996 * 109.47503 * 186.49347 * 1 2 3 27 27 H 1.09000 * 109.47041 * 240.00147 * 2 1 3 28 28 H 1.09002 * 109.46971 * 119.99694 * 2 1 3 29 29 H 1.09005 * 109.47122 * 191.62996 * 4 3 2 30 30 H 1.09002 * 109.47522 * 311.62331 * 4 3 2 31 31 H 0.96996 * 119.99679 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.47190 * 169.15543 * 13 3 2 33 33 H 1.09010 * 109.46944 * 49.15935 * 13 3 2 34 34 H 1.08001 * 119.99669 * 0.25255 * 15 14 13 35 35 H 1.08004 * 120.00419 * 179.97438 * 16 15 14 36 36 H 1.07998 * 120.00096 * 179.97438 * 17 16 15 37 37 H 1.09006 * 109.47224 * 263.26248 * 23 22 14 38 38 H 1.08998 * 109.47113 * 23.26491 * 23 22 14 39 39 H 1.09002 * 109.47075 * 143.26181 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6934 2.0587 1.2639 5 6 2.5554 1.5016 2.3673 6 1 3.3294 0.7842 2.1379 7 6 2.3559 1.9076 3.6697 8 7 1.4136 2.7815 3.9491 9 14 3.4240 1.2165 5.0375 10 1 4.4028 0.2577 4.4648 11 1 4.1503 2.3255 5.7068 12 1 2.5677 0.5164 6.0285 13 6 1.4870 2.1317 -1.1474 14 6 2.1321 1.6328 -2.4147 15 6 1.4382 0.7823 -3.2552 16 6 2.0297 0.3252 -4.4177 17 6 3.3151 0.7189 -4.7404 18 6 4.0084 1.5701 -3.9007 19 7 5.3848 1.9912 -4.2458 20 8 5.9533 1.4916 -5.2002 21 8 5.9490 2.8373 -3.5755 22 6 3.4169 2.0272 -2.7376 23 6 4.1732 2.9543 -1.8216 24 1 -0.3633 0.6112 0.8262 25 1 -0.3634 0.4099 -0.9424 26 1 -0.3634 -1.0210 0.1162 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8779 3.1283 1.1637 30 1 0.6432 1.8922 1.5039 31 1 1.2731 3.0669 4.8654 32 1 1.7036 3.1926 -1.0227 33 1 0.4084 1.9856 -1.2070 34 1 0.4322 0.4786 -3.0056 35 1 1.4877 -0.3396 -5.0741 36 1 3.7775 0.3614 -5.6486 37 1 4.0763 3.9789 -2.1808 38 1 3.7645 2.8824 -0.8137 39 1 5.2260 2.6723 -1.8077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:08 Heat of formation + Delta-G solvation = 11.145829 kcal Electronic energy + Delta-G solvation = -21979.220915 eV Core-core repulsion = 18696.659982 eV Total energy + Delta-G solvation = -3282.560933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.28081 -40.95335 -38.61060 -37.72753 -34.86967 -34.12892 -33.29863 -31.08725 -29.52928 -28.48685 -26.93565 -26.30016 -24.90237 -23.24020 -22.55581 -20.94257 -19.64576 -19.53396 -18.63778 -18.34716 -17.33600 -16.99269 -16.84691 -16.28821 -15.81085 -15.34738 -14.82779 -14.58836 -14.40116 -14.06200 -13.72760 -13.52533 -13.36675 -13.23580 -13.11721 -12.83162 -12.72951 -12.63442 -12.51406 -12.39111 -12.23530 -12.18142 -11.88683 -11.58020 -11.45604 -11.27313 -10.59397 -10.44928 -9.91207 -8.92864 -8.18447 -6.26683 -1.14077 0.02641 0.36278 0.46246 1.38728 1.41349 1.52904 2.30166 2.41750 3.14486 3.30390 3.45670 3.50019 3.80399 3.94820 4.00913 4.08816 4.28909 4.35858 4.51242 4.55517 4.61479 4.66713 4.69559 4.78123 4.90659 4.97287 5.04227 5.07887 5.14366 5.20224 5.31476 5.36747 5.39660 5.53654 5.65196 5.69278 6.10098 6.36769 6.57074 6.63679 6.90070 7.42654 8.91261 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.004892 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.789552 B = 5721.857279 C = 6600.013206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.060 3.940 3 N -0.537 5.537 4 C 0.205 3.795 5 C -0.515 4.515 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.086 3.914 14 C -0.079 4.079 15 C -0.049 4.049 16 C -0.108 4.108 17 C -0.056 4.056 18 C -0.071 4.071 19 N 0.035 4.965 20 O -0.178 6.178 21 O -0.193 6.193 22 C -0.004 4.004 23 C -0.133 4.133 24 H 0.033 0.967 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.000 1.000 30 H -0.013 1.013 31 H 0.263 0.737 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.167 0.833 35 H 0.189 0.811 36 H 0.168 0.832 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 -5.811 -17.465 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.068 4.068 3 N -0.261 5.261 4 C 0.080 3.920 5 C -0.553 4.553 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.573 5.573 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.205 1.205 13 C -0.041 4.041 14 C -0.080 4.080 15 C -0.068 4.068 16 C -0.126 4.126 17 C -0.076 4.076 18 C -0.155 4.155 19 N 0.547 4.453 20 O -0.392 6.392 21 O -0.401 6.401 22 C -0.006 4.006 23 C -0.189 4.189 24 H 0.052 0.948 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.018 0.982 30 H 0.004 0.996 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.184 0.816 35 H 0.206 0.794 36 H 0.185 0.815 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.178 -5.890 -17.168 18.427 hybrid contribution 0.229 0.328 1.256 1.318 sum -2.949 -5.562 -15.913 17.113 Atomic orbital electron populations 1.22315 0.97524 1.02475 1.01577 1.21981 0.93484 0.90026 1.01353 1.62206 1.58971 1.02625 1.02252 1.19435 0.94053 0.92664 0.85890 1.21441 1.17081 1.24786 0.92008 0.92674 1.25741 0.96683 0.95567 1.01122 1.70061 1.33674 1.33337 1.20178 0.85500 0.78798 0.78291 0.79030 1.19278 1.20701 1.20452 1.21069 0.97306 0.98005 0.87761 1.19804 0.92475 0.98757 0.96975 1.21921 1.01092 0.91508 0.92246 1.21564 0.93049 1.00534 0.97503 1.21359 0.94995 0.92365 0.98838 1.21180 0.83141 1.09563 1.01574 1.43900 1.03595 0.98825 0.99017 1.94457 1.67552 1.57342 1.19824 1.94503 1.68893 1.26973 1.49750 1.19746 0.94254 0.94942 0.91662 1.21244 1.00605 0.97944 0.99132 0.94755 0.90813 0.91011 0.90570 0.92831 0.98165 0.99565 0.92837 0.91111 0.91808 0.81597 0.79400 0.81481 0.89712 0.90245 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.16 9.16 71.98 0.66 -4.50 16 2 C 0.06 2.00 5.75 86.30 0.50 2.50 16 3 N -0.54 -20.57 3.83 -905.37 -3.47 -24.04 16 4 C 0.21 10.08 4.62 85.56 0.40 10.48 16 5 C -0.51 -28.07 8.41 25.60 0.22 -27.86 16 6 H 0.06 3.03 7.69 -2.91 -0.02 3.01 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -54.36 13.29 21.45 0.28 -54.07 16 9 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 13 C 0.09 2.61 3.99 85.56 0.34 2.95 16 14 C -0.08 -1.98 4.68 -19.87 -0.09 -2.08 16 15 C -0.05 -0.83 9.12 22.27 0.20 -0.63 16 16 C -0.11 -1.44 10.05 22.27 0.22 -1.22 16 17 C -0.06 -1.05 9.56 22.27 0.21 -0.84 16 18 C -0.07 -1.90 6.83 36.37 0.25 -1.65 16 19 N 0.04 1.11 4.45 -46.46 -0.21 0.90 16 20 O -0.18 -5.44 18.47 18.88 0.35 -5.09 16 21 O -0.19 -6.62 15.37 18.89 0.29 -6.33 16 22 C 0.00 -0.12 5.88 -19.87 -0.12 -0.23 16 23 C -0.13 -4.28 8.12 71.23 0.58 -3.70 16 24 H 0.03 1.22 6.15 -2.38 -0.01 1.21 16 25 H 0.07 1.65 5.79 -2.39 -0.01 1.63 16 26 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.08 2.17 7.12 -2.39 -0.02 2.15 16 28 H 0.05 2.11 7.22 -2.39 -0.02 2.09 16 29 H 0.00 0.01 7.75 -2.38 -0.02 0.00 16 30 H -0.01 -0.70 6.00 -2.39 -0.01 -0.71 16 31 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.07 2.31 6.93 -2.39 -0.02 2.29 16 33 H 0.06 1.71 5.66 -2.38 -0.01 1.70 16 34 H 0.17 1.91 7.31 -2.91 -0.02 1.89 16 35 H 0.19 0.89 8.06 -2.91 -0.02 0.86 16 36 H 0.17 2.44 7.63 -2.91 -0.02 2.42 16 37 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.08 2.91 5.95 -2.39 -0.01 2.90 16 39 H 0.08 2.75 5.87 -2.39 -0.01 2.74 16 Total: -1.00 -65.68 317.62 4.17 -61.51 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.07 Total: 7.13 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 3.83 Total: -25.94 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -3.39 Total: -77.21 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.64 Total: -11.42 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -65.68 4.17 -61.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.660 kcal (2) G-P(sol) polarization free energy of solvation -65.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds