Wall clock time and date at job start Tue Mar 31 2020 00:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46790 * 2 1 4 4 C 1.46894 * 111.00102 * 295.93721 * 3 2 1 5 5 C 1.50700 * 109.47314 * 288.43647 * 4 3 2 6 6 H 1.08000 * 120.00381 * 0.69276 * 5 4 3 7 7 C 1.37886 * 120.00224 * 180.69229 * 5 4 3 8 8 N 1.31513 * 119.99849 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99525 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47420 * 90.00210 * 9 7 5 11 11 H 1.48505 * 109.46855 * 209.99926 * 9 7 5 12 12 H 1.48497 * 109.47498 * 329.99618 * 9 7 5 13 13 C 1.46892 * 111.00259 * 59.89598 * 3 2 1 14 14 C 1.52998 * 109.47388 * 66.04071 * 13 3 2 15 15 C 1.50697 * 109.47461 * 179.97438 * 14 13 3 16 16 C 1.38237 * 119.99548 * 90.00500 * 15 14 13 17 17 C 1.38236 * 120.00007 * 179.97438 * 16 15 14 18 18 C 1.38235 * 119.99823 * 0.02562 * 17 16 15 19 19 N 1.48019 * 119.99675 * 179.97438 * 18 17 16 20 20 O 1.21801 * 120.00635 * 359.97438 * 19 18 17 21 21 O 1.21802 * 119.99688 * 179.97438 * 19 18 17 22 22 C 1.38229 * 120.00300 * 0.25233 * 18 17 16 23 23 C 1.38234 * 120.00740 * 269.98037 * 15 14 13 24 24 H 1.09000 * 109.47327 * 178.46951 * 1 2 3 25 25 H 1.09006 * 109.46735 * 298.46644 * 1 2 3 26 26 H 1.08997 * 109.47023 * 58.46346 * 1 2 3 27 27 H 1.08998 * 109.46619 * 240.00163 * 2 1 3 28 28 H 1.08998 * 109.46953 * 119.99891 * 2 1 3 29 29 H 1.09006 * 109.47030 * 48.43557 * 4 3 2 30 30 H 1.09002 * 109.47396 * 168.43786 * 4 3 2 31 31 H 0.97002 * 119.99410 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47222 * 306.04465 * 13 3 2 33 33 H 1.09005 * 109.47119 * 186.04263 * 13 3 2 34 34 H 1.09007 * 109.47079 * 59.99801 * 14 13 3 35 35 H 1.08997 * 109.47472 * 300.00300 * 14 13 3 36 36 H 1.08003 * 120.00064 * 359.97353 * 16 15 14 37 37 H 1.07998 * 120.00223 * 179.97438 * 17 16 15 38 38 H 1.07995 * 120.00235 * 179.72716 * 22 18 17 39 39 H 1.08006 * 119.99375 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6296 2.0813 -1.2332 5 6 2.4328 1.5434 -2.3894 6 1 3.1523 0.7547 -2.2265 7 6 2.2491 2.0583 -3.6552 8 7 2.9497 1.5885 -4.6642 9 14 1.0051 3.4230 -3.9369 10 1 1.6687 4.7406 -3.7669 11 1 0.4584 3.3180 -5.3136 12 1 -0.1009 3.2953 -2.9542 13 6 1.5466 2.1107 1.1864 14 6 2.1760 1.5021 2.4411 15 6 1.6912 2.2469 3.6581 16 6 0.5463 1.8315 4.3120 17 6 0.1018 2.5143 5.4288 18 6 0.8020 3.6128 5.8913 19 7 0.3257 4.3443 7.0867 20 8 -0.6834 3.9786 7.6626 21 8 0.9428 5.3119 7.4945 22 6 1.9436 4.0317 5.2341 23 6 2.3916 3.3451 4.1210 24 1 -0.3634 -1.0273 -0.0274 25 1 -0.3633 0.4899 0.9035 26 1 -0.3633 0.5375 -0.8759 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5682 1.9194 -1.4217 30 1 1.8205 3.1489 -1.1237 31 1 2.8207 1.9510 -5.5546 32 1 0.4612 2.0337 1.2505 33 1 1.8326 3.1597 1.1087 34 1 3.2615 1.5790 2.3770 35 1 1.8901 0.4531 2.5188 36 1 -0.0009 0.9735 3.9504 37 1 -0.7929 2.1900 5.9394 38 1 2.4881 4.8926 5.5928 39 1 3.2861 3.6696 3.6101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:40 Heat of formation + Delta-G solvation = 22.091440 kcal Electronic energy + Delta-G solvation = -20909.208733 eV Core-core repulsion = 17627.122437 eV Total energy + Delta-G solvation = -3282.086296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.35262 -39.94639 -37.74493 -36.74583 -33.96201 -32.54646 -31.70817 -30.22459 -29.60489 -27.25767 -25.53253 -23.80709 -23.47896 -22.57948 -21.24510 -19.57565 -19.25999 -18.84565 -17.70762 -16.83830 -16.25987 -16.05288 -15.28424 -15.14213 -14.71389 -14.38688 -14.16009 -13.71904 -13.51812 -12.87903 -12.69371 -12.47378 -12.09863 -11.90385 -11.87610 -11.73643 -11.61406 -11.35482 -11.33193 -11.19351 -10.84952 -10.70184 -10.57470 -10.10673 -10.00670 -9.69934 -9.53042 -9.35094 -8.63572 -7.48355 -6.12188 -4.09405 -0.38032 0.66270 1.13335 1.21794 2.98965 3.21468 3.29547 3.30183 4.08416 4.17744 4.22541 4.34639 4.56490 4.67769 4.81270 4.98192 5.07756 5.19192 5.28752 5.36326 5.45517 5.49462 5.58868 5.64158 5.66143 5.80904 5.90034 5.95965 6.07537 6.14409 6.25171 6.28092 6.35932 6.63268 6.80950 6.94098 7.44829 7.51471 7.76704 7.91529 8.57303 8.96941 9.49398 11.01025 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027806 B = 0.003282 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.739989 B = 8529.662644 C = 8869.864956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 N -0.524 5.524 4 C 0.158 3.842 5 C -0.507 4.507 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.054 3.946 14 C -0.089 4.089 15 C -0.014 4.014 16 C -0.118 4.118 17 C -0.052 4.052 18 C -0.058 4.058 19 N 0.032 4.968 20 O -0.167 6.167 21 O -0.166 6.166 22 C -0.051 4.051 23 C -0.115 4.115 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.058 0.942 29 H -0.003 1.003 30 H 0.021 0.979 31 H 0.264 0.736 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.314 0.533 18.688 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.073 4.073 3 N -0.247 5.247 4 C 0.032 3.968 5 C -0.546 4.546 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.194 1.194 13 C -0.074 4.074 14 C -0.127 4.127 15 C -0.015 4.015 16 C -0.137 4.137 17 C -0.071 4.071 18 C -0.141 4.141 19 N 0.550 4.450 20 O -0.382 6.382 21 O -0.381 6.381 22 C -0.071 4.071 23 C -0.134 4.134 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.015 0.985 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.539 0.200 17.919 18.266 hybrid contribution -1.715 1.043 -0.008 2.007 sum -5.254 1.243 17.910 18.706 Atomic orbital electron populations 1.22419 0.99516 1.01464 1.01620 1.22073 0.91902 0.91122 1.02182 1.62177 1.58765 1.01883 1.01875 1.20245 0.94952 0.93891 0.87670 1.20999 1.22176 1.21339 0.90066 0.90143 1.24893 0.95771 0.96596 0.96051 1.69887 1.40974 1.42792 1.00194 0.86905 0.82306 0.83092 0.77687 1.20148 1.21143 1.19396 1.22075 0.96929 0.98348 0.90097 1.20869 1.02476 0.99196 0.90156 1.20593 0.92623 0.93386 0.94919 1.21181 0.96800 1.01023 0.94672 1.21046 0.98999 0.91638 0.95458 1.21104 1.01329 0.99654 0.91975 1.43663 0.99754 1.00081 1.01548 1.94528 1.14406 1.71143 1.58121 1.94532 1.56982 1.17452 1.69128 1.21077 0.92822 0.99372 0.93787 1.21240 1.01366 0.95160 0.95613 0.92892 0.93600 0.91766 0.89461 0.92362 0.98532 0.96131 0.92616 0.94957 0.91198 0.88995 0.89933 0.83588 0.83127 0.83029 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.85 9.26 37.16 0.34 -2.51 16 2 C 0.06 0.92 5.69 -3.82 -0.02 0.89 16 3 N -0.52 -9.64 4.66 -236.07 -1.10 -10.74 16 4 C 0.16 3.56 3.67 -4.98 -0.02 3.54 16 5 C -0.51 -13.72 9.10 -34.44 -0.31 -14.04 16 6 H 0.08 2.38 7.72 -52.49 -0.41 1.97 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 9 Si 0.87 20.79 27.45 -169.99 -4.67 16.12 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.15 6.56 56.52 0.37 -5.78 16 13 C 0.05 0.77 4.69 -3.83 -0.02 0.75 16 14 C -0.09 -0.95 5.27 -27.89 -0.15 -1.09 16 15 C -0.01 -0.13 5.13 -104.63 -0.54 -0.67 16 16 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 17 C -0.05 -0.48 9.56 -39.58 -0.38 -0.86 16 18 C -0.06 -0.61 6.85 -79.95 -0.55 -1.16 16 19 N 0.03 0.40 4.45 33.96 0.15 0.55 16 20 O -0.17 -2.22 18.45 -29.46 -0.54 -2.77 16 21 O -0.17 -2.21 18.45 -29.46 -0.54 -2.76 16 22 C -0.05 -0.48 9.56 -39.59 -0.38 -0.85 16 23 C -0.12 -1.00 9.70 -39.58 -0.38 -1.39 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.60 6.36 -51.93 -0.33 0.27 16 26 H 0.06 1.12 6.21 -51.93 -0.32 0.80 16 27 H 0.09 1.68 7.15 -51.93 -0.37 1.31 16 28 H 0.06 0.80 6.48 -51.93 -0.34 0.46 16 29 H 0.00 -0.07 5.02 -51.93 -0.26 -0.33 16 30 H 0.02 0.47 7.21 -51.93 -0.37 0.10 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 32 H 0.03 0.45 6.03 -51.93 -0.31 0.14 16 33 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 34 H 0.09 0.98 8.09 -51.92 -0.42 0.56 16 35 H 0.08 0.82 6.50 -51.93 -0.34 0.48 16 36 H 0.15 0.98 8.06 -52.48 -0.42 0.55 16 37 H 0.15 1.17 7.61 -52.49 -0.40 0.77 16 38 H 0.15 1.20 7.61 -52.49 -0.40 0.80 16 39 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 324.26 15.07 4.89 4.89 Total: -1.00 -30.45 324.26 -9.04 -39.49 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.11 Total: -1.80 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -2.88 Total: -16.94 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.18 Total: -36.23 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -1.09 Total: -5.52 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.45 -9.04 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.578 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds