Wall clock time and date at job start Tue Mar 31 2020 00:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46790 * 2 1 4 4 C 1.46894 * 111.00102 * 295.93721 * 3 2 1 5 5 C 1.50700 * 109.47314 * 288.43647 * 4 3 2 6 6 H 1.08000 * 120.00381 * 0.69276 * 5 4 3 7 7 C 1.37886 * 120.00224 * 180.69229 * 5 4 3 8 8 N 1.31513 * 119.99849 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99525 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47420 * 90.00210 * 9 7 5 11 11 H 1.48505 * 109.46855 * 209.99926 * 9 7 5 12 12 H 1.48497 * 109.47498 * 329.99618 * 9 7 5 13 13 C 1.46892 * 111.00259 * 59.89598 * 3 2 1 14 14 C 1.52998 * 109.47388 * 66.04071 * 13 3 2 15 15 C 1.50697 * 109.47461 * 179.97438 * 14 13 3 16 16 C 1.38237 * 119.99548 * 90.00500 * 15 14 13 17 17 C 1.38236 * 120.00007 * 179.97438 * 16 15 14 18 18 C 1.38235 * 119.99823 * 0.02562 * 17 16 15 19 19 N 1.48019 * 119.99675 * 179.97438 * 18 17 16 20 20 O 1.21801 * 120.00635 * 359.97438 * 19 18 17 21 21 O 1.21802 * 119.99688 * 179.97438 * 19 18 17 22 22 C 1.38229 * 120.00300 * 0.25233 * 18 17 16 23 23 C 1.38234 * 120.00740 * 269.98037 * 15 14 13 24 24 H 1.09000 * 109.47327 * 178.46951 * 1 2 3 25 25 H 1.09006 * 109.46735 * 298.46644 * 1 2 3 26 26 H 1.08997 * 109.47023 * 58.46346 * 1 2 3 27 27 H 1.08998 * 109.46619 * 240.00163 * 2 1 3 28 28 H 1.08998 * 109.46953 * 119.99891 * 2 1 3 29 29 H 1.09006 * 109.47030 * 48.43557 * 4 3 2 30 30 H 1.09002 * 109.47396 * 168.43786 * 4 3 2 31 31 H 0.97002 * 119.99410 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47222 * 306.04465 * 13 3 2 33 33 H 1.09005 * 109.47119 * 186.04263 * 13 3 2 34 34 H 1.09007 * 109.47079 * 59.99801 * 14 13 3 35 35 H 1.08997 * 109.47472 * 300.00300 * 14 13 3 36 36 H 1.08003 * 120.00064 * 359.97353 * 16 15 14 37 37 H 1.07998 * 120.00223 * 179.97438 * 17 16 15 38 38 H 1.07995 * 120.00235 * 179.72716 * 22 18 17 39 39 H 1.08006 * 119.99375 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6296 2.0813 -1.2332 5 6 2.4328 1.5434 -2.3894 6 1 3.1523 0.7547 -2.2265 7 6 2.2491 2.0583 -3.6552 8 7 2.9497 1.5885 -4.6642 9 14 1.0051 3.4230 -3.9369 10 1 1.6687 4.7406 -3.7669 11 1 0.4584 3.3180 -5.3136 12 1 -0.1009 3.2953 -2.9542 13 6 1.5466 2.1107 1.1864 14 6 2.1760 1.5021 2.4411 15 6 1.6912 2.2469 3.6581 16 6 0.5463 1.8315 4.3120 17 6 0.1018 2.5143 5.4288 18 6 0.8020 3.6128 5.8913 19 7 0.3257 4.3443 7.0867 20 8 -0.6834 3.9786 7.6626 21 8 0.9428 5.3119 7.4945 22 6 1.9436 4.0317 5.2341 23 6 2.3916 3.3451 4.1210 24 1 -0.3634 -1.0273 -0.0274 25 1 -0.3633 0.4899 0.9035 26 1 -0.3633 0.5375 -0.8759 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5682 1.9194 -1.4217 30 1 1.8205 3.1489 -1.1237 31 1 2.8207 1.9510 -5.5546 32 1 0.4612 2.0337 1.2505 33 1 1.8326 3.1597 1.1087 34 1 3.2615 1.5790 2.3770 35 1 1.8901 0.4531 2.5188 36 1 -0.0009 0.9735 3.9504 37 1 -0.7929 2.1900 5.9394 38 1 2.4881 4.8926 5.5928 39 1 3.2861 3.6696 3.6101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:39 Heat of formation + Delta-G solvation = 4.345097 kcal Electronic energy + Delta-G solvation = -20909.978272 eV Core-core repulsion = 17627.122437 eV Total energy + Delta-G solvation = -3282.855835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.26054 -40.71366 -39.05630 -37.70044 -35.11993 -34.35682 -32.38173 -31.35547 -31.05685 -28.64636 -26.67305 -25.04414 -24.15622 -23.96203 -22.30320 -20.61961 -20.38669 -19.77228 -18.88055 -18.62517 -17.22766 -17.03406 -16.45963 -16.21587 -16.00259 -15.65149 -14.98068 -14.77719 -14.69911 -14.39596 -13.94836 -13.70664 -13.33334 -13.12534 -13.07420 -12.77320 -12.63331 -12.50428 -12.39769 -12.33247 -12.21328 -12.13595 -11.96180 -11.86445 -11.43084 -11.32513 -10.75918 -10.35902 -10.31292 -8.91279 -8.26968 -6.28729 -1.25273 0.00971 0.28191 0.38181 1.34265 1.35159 1.44899 2.28013 2.34079 3.06733 3.17787 3.41521 3.53249 3.75173 3.84835 4.00702 4.12246 4.29378 4.31181 4.34656 4.47923 4.58080 4.67992 4.71128 4.74804 4.79763 4.83874 4.93235 5.01257 5.08142 5.13772 5.18300 5.32503 5.37696 5.47122 5.54357 5.59524 6.02137 6.44113 6.46140 6.69126 6.78520 7.34495 8.89906 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027806 B = 0.003282 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.739989 B = 8529.662644 C = 8869.864956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.055 3.945 3 N -0.541 5.541 4 C 0.168 3.832 5 C -0.508 4.508 6 H 0.038 0.962 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.251 1.251 13 C 0.054 3.946 14 C -0.078 4.078 15 C -0.015 4.015 16 C -0.110 4.110 17 C -0.053 4.053 18 C -0.072 4.072 19 N 0.032 4.968 20 O -0.182 6.182 21 O -0.187 6.187 22 C -0.054 4.054 23 C -0.113 4.113 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.092 0.908 29 H -0.002 1.002 30 H 0.022 0.978 31 H 0.265 0.735 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.687 0.780 20.128 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.073 4.073 3 N -0.264 5.264 4 C 0.041 3.959 5 C -0.547 4.547 6 H 0.056 0.944 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.766 3.234 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.174 1.174 13 C -0.074 4.074 14 C -0.115 4.115 15 C -0.016 4.016 16 C -0.129 4.129 17 C -0.072 4.072 18 C -0.156 4.156 19 N 0.546 4.454 20 O -0.395 6.395 21 O -0.399 6.399 22 C -0.073 4.073 23 C -0.131 4.131 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.016 0.984 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.188 0.812 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.915 0.457 19.412 20.030 hybrid contribution -1.202 0.851 -0.441 1.538 sum -6.117 1.308 18.970 19.975 Atomic orbital electron populations 1.22337 0.97877 1.02604 1.01446 1.22064 0.93267 0.90044 1.01888 1.62028 1.59867 1.02770 1.01781 1.19971 0.93919 0.93910 0.88148 1.21283 1.21419 1.19951 0.92040 0.94403 1.25814 0.98015 0.99450 0.95769 1.70051 1.43353 1.44926 1.00819 0.85788 0.80029 0.79725 0.77827 1.19189 1.21080 1.17428 1.22138 0.97723 0.97947 0.89550 1.20706 1.02218 0.99770 0.88804 1.20525 0.93055 0.93432 0.94592 1.21419 0.96333 1.01254 0.93864 1.21257 0.99253 0.91029 0.95618 1.21346 1.02337 1.00367 0.91505 1.43986 0.99469 0.99972 1.01999 1.94508 1.14883 1.71269 1.58860 1.94519 1.57192 1.18284 1.69906 1.21233 0.92498 0.99746 0.93799 1.21425 1.01725 0.94761 0.95196 0.91021 0.90958 0.94721 0.93522 0.88936 0.98409 0.95988 0.92583 0.93994 0.91601 0.89083 0.88602 0.81200 0.81921 0.82195 0.81710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.99 9.26 71.98 0.67 -4.32 16 2 C 0.06 1.74 5.69 86.30 0.49 2.23 16 3 N -0.54 -19.11 4.66 -900.79 -4.20 -23.31 16 4 C 0.17 7.40 3.67 85.56 0.31 7.72 16 5 C -0.51 -28.16 9.10 25.60 0.23 -27.93 16 6 H 0.04 2.35 7.72 -2.91 -0.02 2.33 16 7 C 0.01 0.36 5.47 84.66 0.46 0.83 16 8 N -0.95 -58.41 13.96 21.45 0.30 -58.11 16 9 Si 0.94 42.78 27.45 68.60 1.88 44.66 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.25 -10.52 6.56 99.48 0.65 -9.87 16 13 C 0.05 1.37 4.69 86.30 0.40 1.77 16 14 C -0.08 -1.35 5.27 29.85 0.16 -1.20 16 15 C -0.02 -0.22 5.13 -19.87 -0.10 -0.32 16 16 C -0.11 -1.42 9.70 22.27 0.22 -1.21 16 17 C -0.05 -0.80 9.56 22.27 0.21 -0.59 16 18 C -0.07 -1.40 6.85 36.37 0.25 -1.15 16 19 N 0.03 0.79 4.45 -46.47 -0.21 0.58 16 20 O -0.18 -4.70 18.45 18.89 0.35 -4.35 16 21 O -0.19 -4.93 18.45 18.88 0.35 -4.58 16 22 C -0.05 -0.88 9.56 22.27 0.21 -0.66 16 23 C -0.11 -1.62 9.70 22.27 0.22 -1.41 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 1.57 6.36 -2.38 -0.02 1.55 16 26 H 0.03 1.14 6.21 -2.39 -0.01 1.12 16 27 H 0.05 1.83 7.15 -2.39 -0.02 1.82 16 28 H 0.09 2.26 6.48 -2.39 -0.02 2.24 16 29 H 0.00 -0.07 5.02 -2.38 -0.01 -0.08 16 30 H 0.02 0.97 7.21 -2.39 -0.02 0.95 16 31 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.04 0.99 6.03 -2.38 -0.01 0.98 16 33 H 0.07 1.72 7.87 -2.38 -0.02 1.70 16 34 H 0.09 1.66 8.09 -2.38 -0.02 1.64 16 35 H 0.10 1.45 6.50 -2.39 -0.02 1.43 16 36 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 37 H 0.16 2.06 7.61 -2.91 -0.02 2.04 16 38 H 0.16 2.28 7.61 -2.91 -0.02 2.25 16 39 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -68.21 324.26 3.21 -65.00 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.00 Total: 6.35 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 3.73 Total: -26.25 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -4.10 Total: -80.84 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.70 Total: -8.93 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.66 kcal Total: -68.21 3.21 -65.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.342 kcal (2) G-P(sol) polarization free energy of solvation -68.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds