Wall clock time and date at job start Tue Mar 31 2020 00:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45203 * 109.46772 * 2 1 4 4 C 1.34758 * 116.99542 * 179.97438 * 3 2 1 5 5 O 1.21511 * 120.00406 * 0.02562 * 4 3 2 6 6 C 1.47404 * 119.99696 * 180.02562 * 4 3 2 7 7 C 1.40399 * 120.47962 * 180.02562 * 6 4 3 8 8 C 1.36835 * 118.48994 * 179.97438 * 7 6 4 9 9 C 1.39423 * 119.38409 * 359.97438 * 8 7 6 10 10 N 1.38420 * 119.53375 * 180.02562 * 9 8 7 11 11 C 1.46508 * 120.00249 * 4.99772 * 10 9 8 12 12 C 1.52998 * 109.46500 * 89.99975 * 11 10 9 13 13 C 1.46496 * 120.00170 * 185.00468 * 10 9 8 14 14 C 1.50701 * 109.47458 * 89.99781 * 13 10 9 15 15 H 1.07999 * 119.99605 * 359.97438 * 14 13 10 16 16 C 1.37878 * 119.99879 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00476 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99627 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47649 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47159 * 120.00496 * 18 16 14 21 21 H 1.48501 * 109.46887 * 240.00150 * 18 16 14 22 22 N 1.32610 * 120.92782 * 0.02562 * 9 8 7 23 23 C 1.31653 * 121.64783 * 0.02562 * 22 9 8 24 24 H 1.08996 * 109.47317 * 299.99506 * 1 2 3 25 25 H 1.09004 * 109.47022 * 60.00055 * 1 2 3 26 26 H 1.09002 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46920 * 240.00320 * 2 1 3 28 28 H 1.08996 * 109.47180 * 120.00223 * 2 1 3 29 29 H 1.07998 * 120.75925 * 359.95479 * 7 6 4 30 30 H 1.08002 * 120.30977 * 179.72652 * 8 7 6 31 31 H 1.08992 * 109.47339 * 210.00446 * 11 10 9 32 32 H 1.08995 * 109.46943 * 330.00715 * 11 10 9 33 33 H 1.08992 * 109.47709 * 300.00244 * 12 11 10 34 34 H 1.08999 * 109.47383 * 60.00591 * 12 11 10 35 35 H 1.09005 * 109.46926 * 180.02562 * 12 11 10 36 36 H 1.08999 * 109.47258 * 209.99755 * 13 10 9 37 37 H 1.09002 * 109.46893 * 329.99851 * 13 10 9 38 38 H 0.96997 * 120.00128 * 179.97438 * 17 16 14 39 39 H 1.08003 * 119.74658 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 0.0005 5 8 4.0902 0.5820 0.0005 6 6 3.9133 2.9077 0.0011 7 6 5.3036 3.1033 0.0012 8 6 5.7823 4.3852 0.0012 9 6 4.8836 5.4511 0.0007 10 7 5.3645 6.7491 0.0002 11 6 6.8042 6.9969 -0.1103 12 6 7.1875 7.1262 -1.5859 13 6 4.4339 7.8751 0.1103 14 6 4.2308 8.2188 1.5635 15 1 4.7433 7.6545 2.3285 16 6 3.3898 9.2529 1.9163 17 7 2.7645 9.9390 0.9847 18 14 3.1375 9.6784 3.7176 19 1 3.9470 8.7624 4.5607 20 1 3.5630 11.0804 3.9593 21 1 1.7013 9.5302 4.0647 22 7 3.5746 5.2389 0.0006 23 6 3.0720 4.0221 0.0016 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 5.9798 2.2613 0.0015 30 1 6.8465 4.5696 0.0057 31 1 7.0553 7.9196 0.4125 32 1 7.3511 6.1662 0.3356 33 1 6.9365 6.2034 -2.1088 34 1 6.6407 7.9568 -2.0320 35 1 8.2588 7.3101 -1.6682 36 1 4.8445 8.7385 -0.4132 37 1 3.4776 7.6010 -0.3353 38 1 2.1726 10.6662 1.2330 39 1 2.0008 3.8847 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454633.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:11 Heat of formation + Delta-G solvation = -48.301814 kcal Electronic energy + Delta-G solvation = -21209.358958 eV Core-core repulsion = 17924.220182 eV Total energy + Delta-G solvation = -3285.138776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 4.58 seconds Orbital eigenvalues (eV) -40.42925 -39.45582 -36.64997 -36.19205 -32.92499 -32.28075 -31.83989 -30.79810 -29.68699 -26.87935 -24.44996 -23.84655 -22.94687 -22.27469 -21.38647 -20.07364 -17.89961 -17.10641 -16.59566 -16.41488 -16.20369 -15.81110 -14.67271 -14.62715 -14.36040 -14.07998 -13.71146 -13.50508 -12.97413 -12.86970 -12.77079 -12.59231 -12.28499 -12.08688 -11.95099 -11.70762 -11.64159 -11.23859 -10.98783 -10.72981 -10.62524 -10.50085 -10.37136 -10.16733 -10.01108 -9.53268 -9.15774 -8.78036 -8.47723 -7.01256 -6.08118 -4.14965 1.18304 1.79503 2.83156 2.94158 3.25934 3.34069 3.37522 3.61053 4.35349 4.41706 4.85314 4.85812 4.91076 5.04667 5.17880 5.19060 5.25184 5.28351 5.40455 5.44679 5.54642 5.63236 5.67876 5.71525 5.87100 5.96467 6.07087 6.14305 6.26940 6.38899 6.45911 6.65434 6.75986 7.01221 7.39435 7.69655 7.85156 8.00894 8.09692 8.16150 8.68714 8.90455 9.49906 10.97781 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.004623 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.568779 B = 6055.308023 C = 7309.969049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.357 6.357 4 C 0.527 3.473 5 O -0.532 6.532 6 C -0.286 4.286 7 C 0.029 3.971 8 C -0.271 4.271 9 C 0.449 3.551 10 N -0.567 5.567 11 C 0.113 3.887 12 C -0.169 4.169 13 C 0.246 3.754 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.064 3.936 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.282 1.282 22 N -0.532 5.532 23 C 0.223 3.777 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.055 0.945 38 H 0.263 0.737 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 -13.572 -3.814 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.274 6.274 4 C 0.375 3.625 5 O -0.423 6.423 6 C -0.294 4.294 7 C 0.004 3.996 8 C -0.296 4.296 9 C 0.209 3.791 10 N -0.269 5.269 11 C -0.011 4.011 12 C -0.227 4.227 13 C 0.127 3.873 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.724 3.276 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.208 1.208 22 N -0.248 5.248 23 C 0.058 3.942 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.874 -12.673 -3.842 13.374 hybrid contribution 0.354 -0.555 1.057 1.245 sum 2.228 -13.228 -2.785 13.700 Atomic orbital electron populations 1.21807 0.92783 1.02694 1.03716 1.22944 0.95173 0.80555 1.02310 1.86566 1.24379 1.31782 1.84697 1.20927 0.80021 0.89712 0.71878 1.90772 1.60378 1.42759 1.48359 1.19526 0.94737 0.90704 1.24392 1.20885 0.93270 0.96760 0.88665 1.21103 1.00509 0.92036 1.15970 1.18724 0.88793 0.86154 0.85393 1.47391 1.06889 1.03609 1.69029 1.21512 0.80695 1.02462 0.96438 1.22208 1.01011 1.02420 0.97109 1.19456 0.88807 0.81725 0.97292 1.21441 1.27234 1.15815 0.92039 0.92512 1.24898 0.95336 0.95971 0.97647 1.69933 1.29375 1.21402 1.32436 0.86467 0.78128 0.78041 0.84931 1.19874 1.20973 1.20819 1.67561 1.12478 1.23585 1.21188 1.22880 0.99831 0.85735 0.85735 0.91360 0.91405 0.90507 0.91493 0.91473 0.84759 0.84798 0.89505 0.91184 0.92765 0.92015 0.91937 0.95089 0.92713 0.92723 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 2 C 0.06 0.70 6.20 37.16 0.23 0.93 16 3 O -0.36 -5.05 9.49 -40.65 -0.39 -5.43 16 4 C 0.53 8.48 7.89 34.46 0.27 8.75 16 5 O -0.53 -9.36 16.20 -19.27 -0.31 -9.68 16 6 C -0.29 -4.74 5.89 -104.84 -0.62 -5.36 16 7 C 0.03 0.46 9.65 -39.28 -0.38 0.08 16 8 C -0.27 -4.41 9.20 -39.65 -0.36 -4.77 16 9 C 0.45 8.84 7.36 -155.30 -1.14 7.69 16 10 N -0.57 -11.47 2.56 -175.25 -0.45 -11.92 16 11 C 0.11 1.78 5.96 -4.04 -0.02 1.75 16 12 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 13 C 0.25 6.08 5.21 -5.20 -0.03 6.05 16 14 C -0.53 -14.28 9.39 -34.44 -0.32 -14.61 16 15 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 18 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 N -0.53 -11.08 9.04 -12.13 -0.11 -11.19 16 23 C 0.22 3.93 10.79 -17.11 -0.18 3.74 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.13 1.87 7.73 -52.49 -0.41 1.47 16 30 H 0.13 1.83 5.98 -52.49 -0.31 1.52 16 31 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.07 0.95 5.94 -51.93 -0.31 0.64 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 37 H 0.05 1.49 7.28 -51.93 -0.38 1.12 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.16 2.47 7.61 -52.48 -0.40 2.07 16 LS Contribution 336.88 15.07 5.08 5.08 Total: -1.00 -31.17 336.88 -7.93 -39.10 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.57 Total: -0.58 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.90 Total: 3.19 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.18 Total: -47.98 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.70 Total: -15.11 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.17 -7.93 -39.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454633.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.202 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.59 seconds