Wall clock time and date at job start Tue Mar 31 2020 00:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45203 * 109.46772 * 2 1 4 4 C 1.34758 * 116.99542 * 179.97438 * 3 2 1 5 5 O 1.21511 * 120.00406 * 0.02562 * 4 3 2 6 6 C 1.47404 * 119.99696 * 180.02562 * 4 3 2 7 7 C 1.40399 * 120.47962 * 180.02562 * 6 4 3 8 8 C 1.36835 * 118.48994 * 179.97438 * 7 6 4 9 9 C 1.39423 * 119.38409 * 359.97438 * 8 7 6 10 10 N 1.38420 * 119.53375 * 180.02562 * 9 8 7 11 11 C 1.46508 * 120.00249 * 4.99772 * 10 9 8 12 12 C 1.52998 * 109.46500 * 89.99975 * 11 10 9 13 13 C 1.46496 * 120.00170 * 185.00468 * 10 9 8 14 14 C 1.50701 * 109.47458 * 89.99781 * 13 10 9 15 15 H 1.07999 * 119.99605 * 359.97438 * 14 13 10 16 16 C 1.37878 * 119.99879 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00476 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99627 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47649 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47159 * 120.00496 * 18 16 14 21 21 H 1.48501 * 109.46887 * 240.00150 * 18 16 14 22 22 N 1.32610 * 120.92782 * 0.02562 * 9 8 7 23 23 C 1.31653 * 121.64783 * 0.02562 * 22 9 8 24 24 H 1.08996 * 109.47317 * 299.99506 * 1 2 3 25 25 H 1.09004 * 109.47022 * 60.00055 * 1 2 3 26 26 H 1.09002 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46920 * 240.00320 * 2 1 3 28 28 H 1.08996 * 109.47180 * 120.00223 * 2 1 3 29 29 H 1.07998 * 120.75925 * 359.95479 * 7 6 4 30 30 H 1.08002 * 120.30977 * 179.72652 * 8 7 6 31 31 H 1.08992 * 109.47339 * 210.00446 * 11 10 9 32 32 H 1.08995 * 109.46943 * 330.00715 * 11 10 9 33 33 H 1.08992 * 109.47709 * 300.00244 * 12 11 10 34 34 H 1.08999 * 109.47383 * 60.00591 * 12 11 10 35 35 H 1.09005 * 109.46926 * 180.02562 * 12 11 10 36 36 H 1.08999 * 109.47258 * 209.99755 * 13 10 9 37 37 H 1.09002 * 109.46893 * 329.99851 * 13 10 9 38 38 H 0.96997 * 120.00128 * 179.97438 * 17 16 14 39 39 H 1.08003 * 119.74658 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 0.0005 5 8 4.0902 0.5820 0.0005 6 6 3.9133 2.9077 0.0011 7 6 5.3036 3.1033 0.0012 8 6 5.7823 4.3852 0.0012 9 6 4.8836 5.4511 0.0007 10 7 5.3645 6.7491 0.0002 11 6 6.8042 6.9969 -0.1103 12 6 7.1875 7.1262 -1.5859 13 6 4.4339 7.8751 0.1103 14 6 4.2308 8.2188 1.5635 15 1 4.7433 7.6545 2.3285 16 6 3.3898 9.2529 1.9163 17 7 2.7645 9.9390 0.9847 18 14 3.1375 9.6784 3.7176 19 1 3.9470 8.7624 4.5607 20 1 3.5630 11.0804 3.9593 21 1 1.7013 9.5302 4.0647 22 7 3.5746 5.2389 0.0006 23 6 3.0720 4.0221 0.0016 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 5.9798 2.2613 0.0015 30 1 6.8465 4.5696 0.0057 31 1 7.0553 7.9196 0.4125 32 1 7.3511 6.1662 0.3356 33 1 6.9365 6.2034 -2.1088 34 1 6.6407 7.9568 -2.0320 35 1 8.2588 7.3101 -1.6682 36 1 4.8445 8.7385 -0.4132 37 1 3.4776 7.6010 -0.3353 38 1 2.1726 10.6662 1.2330 39 1 2.0008 3.8847 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454633.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:07 Heat of formation + Delta-G solvation = -64.895117 kcal Electronic energy + Delta-G solvation = -21210.078498 eV Core-core repulsion = 17924.220182 eV Total energy + Delta-G solvation = -3285.858316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72917 -40.77308 -38.01987 -37.47484 -34.90931 -33.66111 -32.81198 -31.99005 -31.24210 -28.60540 -25.77696 -25.41774 -24.06637 -23.63073 -22.65987 -21.46086 -19.17008 -18.63775 -18.36467 -17.64446 -17.50129 -17.26789 -16.40275 -15.91850 -15.87043 -15.25731 -14.97746 -14.74202 -14.31125 -14.21572 -14.07433 -13.67312 -13.63554 -13.45190 -13.27562 -12.97160 -12.87474 -12.68519 -12.48948 -12.45874 -12.19219 -11.88095 -11.78910 -11.59859 -11.47779 -10.99915 -10.72475 -10.61506 -10.18879 -8.58589 -8.10418 -6.32371 -0.17384 0.47611 1.37486 1.39698 1.50595 1.62813 1.73182 2.16287 2.41706 3.00352 3.11297 3.56661 3.81711 3.94694 4.01332 4.06176 4.13044 4.17075 4.20968 4.38052 4.39207 4.56290 4.78315 4.81496 4.88121 4.89704 4.96759 5.01464 5.11507 5.16176 5.23187 5.28748 5.37198 5.48333 5.56406 5.72308 6.06300 6.17927 6.49667 6.77095 6.79514 7.28889 7.38658 8.87714 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.004623 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.568779 B = 6055.308023 C = 7309.969049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.361 6.361 4 C 0.532 3.468 5 O -0.546 6.546 6 C -0.282 4.282 7 C 0.032 3.968 8 C -0.256 4.256 9 C 0.426 3.574 10 N -0.581 5.581 11 C 0.108 3.892 12 C -0.159 4.159 13 C 0.267 3.733 14 C -0.535 4.535 15 H 0.048 0.952 16 C 0.014 3.986 17 N -0.925 5.925 18 Si 0.961 3.039 19 H -0.271 1.271 20 H -0.273 1.273 21 H -0.281 1.281 22 N -0.577 5.577 23 C 0.215 3.785 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.159 0.841 30 H 0.165 0.835 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.095 0.905 36 H 0.014 0.986 37 H 0.020 0.980 38 H 0.266 0.734 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 -15.283 -3.182 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 O -0.278 6.278 4 C 0.380 3.620 5 O -0.439 6.439 6 C -0.290 4.290 7 C 0.007 3.993 8 C -0.281 4.281 9 C 0.188 3.812 10 N -0.286 5.286 11 C -0.014 4.014 12 C -0.217 4.217 13 C 0.146 3.854 14 C -0.574 4.574 15 H 0.066 0.934 16 C -0.185 4.185 17 N -0.565 5.565 18 Si 0.786 3.214 19 H -0.196 1.196 20 H -0.199 1.199 21 H -0.207 1.207 22 N -0.294 5.294 23 C 0.052 3.948 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.121 0.879 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.177 0.823 30 H 0.182 0.818 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.032 0.968 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.786 -14.426 -3.217 15.040 hybrid contribution 0.016 -0.175 0.820 0.839 sum 2.802 -14.601 -2.397 15.059 Atomic orbital electron populations 1.21837 0.90555 1.04400 1.03627 1.23304 0.96925 0.78918 1.02699 1.86566 1.23192 1.33966 1.84087 1.20785 0.80630 0.89145 0.71477 1.90762 1.60916 1.43067 1.49149 1.19714 0.95340 0.90807 1.23109 1.21189 0.93225 0.97280 0.87578 1.21302 1.01427 0.91012 1.14368 1.19064 0.89156 0.86621 0.86374 1.47261 1.07867 1.02781 1.70671 1.21762 0.78465 1.03086 0.98110 1.22130 1.02745 1.01657 0.95197 1.18813 0.88357 0.82708 0.95512 1.21680 1.27017 1.15642 0.93045 0.93352 1.25711 0.95089 0.95943 1.01782 1.70041 1.30073 1.21985 1.34439 0.85470 0.77892 0.78138 0.79892 1.19563 1.19858 1.20661 1.67481 1.13920 1.25369 1.22650 1.23060 1.00667 0.85269 0.85807 0.91552 0.91376 0.87877 0.91015 0.91212 0.82312 0.81762 0.90591 0.88363 0.92524 0.94154 0.88600 0.96785 0.96224 0.92510 0.80951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 10.29 71.98 0.74 -1.35 16 2 C 0.05 1.10 6.20 71.98 0.45 1.55 16 3 O -0.36 -9.77 9.49 -56.69 -0.54 -10.31 16 4 C 0.53 16.33 7.89 70.24 0.55 16.89 16 5 O -0.55 -18.23 16.20 19.80 0.32 -17.91 16 6 C -0.28 -9.02 5.89 -20.00 -0.12 -9.13 16 7 C 0.03 0.93 9.65 22.47 0.22 1.15 16 8 C -0.26 -7.81 9.20 22.23 0.20 -7.60 16 9 C 0.43 16.72 7.36 133.27 0.98 17.70 16 10 N -0.58 -23.82 2.56 -708.36 -1.81 -25.63 16 11 C 0.11 3.29 5.96 86.38 0.51 3.81 16 12 C -0.16 -4.03 10.24 71.98 0.74 -3.30 16 13 C 0.27 13.77 5.21 85.63 0.45 14.22 16 14 C -0.54 -29.74 9.39 25.60 0.24 -29.50 16 15 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 16 C 0.01 0.78 5.46 84.66 0.46 1.24 16 17 N -0.93 -54.40 13.29 21.45 0.28 -54.12 16 18 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 22 N -0.58 -24.54 9.04 -192.29 -1.74 -26.28 16 23 C 0.22 7.59 10.79 85.05 0.92 8.50 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.16 3.88 7.73 -2.91 -0.02 3.86 16 30 H 0.17 3.90 5.98 -2.91 -0.02 3.88 16 31 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 32 H 0.10 2.40 5.94 -2.39 -0.01 2.38 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.01 0.76 8.07 -2.39 -0.02 0.74 16 37 H 0.02 1.14 7.28 -2.39 -0.02 1.12 16 38 H 0.27 14.70 8.31 -92.71 -0.77 13.92 16 39 H 0.17 5.38 7.61 -2.91 -0.02 5.36 16 Total: -1.00 -68.46 336.88 5.93 -62.53 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.04 Total: 11.41 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.34 Total: 14.18 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -3.26 Total: -106.03 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.22 Total: -28.22 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.46 5.93 -62.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454633.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.364 kcal (2) G-P(sol) polarization free energy of solvation -68.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds