Wall clock time and date at job start Tue Mar 31 2020 00:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47732 * 2 1 4 4 C 1.46494 * 119.99710 * 89.99741 * 3 2 1 5 5 C 1.53004 * 109.47180 * 90.00478 * 4 3 2 6 6 C 1.34774 * 119.99565 * 269.72854 * 3 2 1 7 7 O 1.21586 * 120.00761 * 359.97438 * 6 3 2 8 8 N 1.34786 * 119.99512 * 179.97438 * 6 3 2 9 9 C 1.39938 * 119.99973 * 175.51634 * 8 6 3 10 10 C 1.38960 * 120.03795 * 214.84573 * 9 8 6 11 11 C 1.38155 * 120.07142 * 179.74276 * 10 9 8 12 12 C 1.38168 * 120.13416 * 0.55389 * 11 10 9 13 13 C 1.38905 * 120.07428 * 359.70482 * 12 11 10 14 14 O 1.35749 * 120.03678 * 179.97438 * 13 12 11 15 15 C 1.34833 * 117.00065 * 5.35603 * 14 13 12 16 16 H 1.07994 * 119.99751 * 354.96823 * 15 14 13 17 17 C 1.38649 * 119.99923 * 174.96717 * 15 14 13 18 18 N 1.31555 * 119.99840 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00262 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47221 * 90.00119 * 19 17 15 21 21 H 1.48497 * 109.47282 * 210.00069 * 19 17 15 22 22 H 1.48497 * 109.47187 * 330.00183 * 19 17 15 23 23 C 1.38711 * 120.03741 * 35.12063 * 9 8 6 24 24 H 1.08991 * 109.47388 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46969 * 300.00349 * 1 2 3 26 26 H 1.09005 * 109.46747 * 59.99738 * 1 2 3 27 27 H 1.09003 * 109.46969 * 239.99651 * 2 1 3 28 28 H 1.09005 * 109.46747 * 120.00262 * 2 1 3 29 29 H 1.09009 * 109.46872 * 210.00181 * 4 3 2 30 30 H 1.08998 * 109.47577 * 329.99984 * 4 3 2 31 31 H 1.08996 * 109.47228 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.46982 * 299.99711 * 5 4 3 33 33 H 1.09004 * 109.46905 * 59.99924 * 5 4 3 34 34 H 0.97002 * 119.99623 * 355.51022 * 8 6 3 35 35 H 1.08000 * 119.95941 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.93440 * 180.27838 * 11 10 9 37 37 H 1.08001 * 119.96268 * 179.72226 * 12 11 10 38 38 H 0.96998 * 119.99986 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.06861 * 359.95987 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2626 2.0716 1.2687 5 6 3.7077 1.8312 1.7104 6 6 2.2484 2.0145 -1.1672 7 8 2.0508 1.4396 -2.2202 8 7 2.6973 3.2854 -1.1672 9 6 3.0253 3.9116 -2.3749 10 6 4.0803 4.8146 -2.4262 11 6 4.4081 5.4292 -3.6193 12 6 3.6814 5.1570 -4.7624 13 6 2.6222 4.2594 -4.7166 14 8 1.9084 3.9929 -5.8401 15 6 2.3464 4.5458 -6.9892 16 1 3.1792 5.2331 -6.9746 17 6 1.7275 4.2318 -8.1895 18 7 2.1552 4.7708 -9.3108 19 14 0.2875 3.0423 -8.2149 20 1 -0.9805 3.7963 -8.0444 21 1 0.2638 2.3212 -9.5128 22 1 0.4341 2.0638 -7.1076 23 6 2.2941 3.6360 -3.5210 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0957 3.1410 1.1384 30 1 1.5818 1.6876 2.0284 31 1 3.8895 2.3453 2.6542 32 1 3.8745 0.7620 1.8408 33 1 4.3885 2.2153 0.9508 34 1 2.7929 3.7660 -0.3300 35 1 4.6474 5.0326 -1.5333 36 1 5.2313 6.1272 -3.6575 37 1 3.9372 5.6424 -5.6926 38 1 1.7221 4.5515 -10.1505 39 1 1.4713 2.9374 -3.4829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048488601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:25 Heat of formation + Delta-G solvation = -18.777609 kcal Electronic energy + Delta-G solvation = -21539.564468 eV Core-core repulsion = 18255.705957 eV Total energy + Delta-G solvation = -3283.858511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.62094 -38.93891 -37.06826 -36.01409 -34.28918 -32.31999 -32.07496 -30.01296 -29.36541 -28.14751 -25.16288 -23.88182 -23.69463 -22.02406 -21.12291 -19.63866 -18.40779 -17.88319 -17.29587 -16.40533 -15.61847 -15.14056 -14.98598 -14.58055 -14.26193 -14.17199 -13.98630 -13.73599 -13.58279 -13.09347 -12.86756 -12.69085 -12.33633 -12.25558 -12.21954 -11.96287 -11.59684 -11.49231 -11.15822 -11.08814 -10.92625 -10.79467 -10.18335 -9.87655 -9.66288 -9.24607 -8.84566 -8.79440 -7.70885 -7.24399 -6.34659 -4.00947 2.05868 2.29816 2.57762 3.27300 3.32275 3.32844 3.51778 3.79878 4.32715 4.54299 4.57146 4.78882 4.84440 4.98036 5.01546 5.18329 5.18952 5.26825 5.36664 5.42840 5.59276 5.61727 5.76906 5.79532 5.84776 6.08267 6.12899 6.18440 6.27546 6.40907 6.54260 6.77773 6.99408 7.12788 7.19390 7.39843 7.67032 7.87797 7.94991 8.10658 8.65227 9.01259 9.65323 10.72887 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020871 B = 0.004667 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.272566 B = 5998.653941 C = 7196.336571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.630 5.630 4 C 0.105 3.895 5 C -0.175 4.175 6 C 0.701 3.299 7 O -0.560 6.560 8 N -0.682 5.682 9 C 0.190 3.810 10 C -0.229 4.229 11 C -0.060 4.060 12 C -0.234 4.234 13 C 0.173 3.827 14 O -0.215 6.215 15 C -0.388 4.388 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.881 5.881 19 Si 0.902 3.098 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.257 1.257 23 C -0.186 4.186 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.401 0.599 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.279 0.721 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 -4.961 23.192 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.006 3.994 3 N -0.369 5.369 4 C -0.018 4.018 5 C -0.233 4.233 6 C 0.403 3.597 7 O -0.435 6.435 8 N -0.330 5.330 9 C 0.096 3.904 10 C -0.250 4.250 11 C -0.079 4.079 12 C -0.254 4.254 13 C 0.120 3.880 14 O -0.119 6.119 15 C -0.463 4.463 16 H 0.125 0.875 17 C -0.139 4.139 18 N -0.519 5.519 19 Si 0.728 3.272 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.181 1.181 23 C -0.208 4.208 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.237 0.763 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.151 0.849 38 H 0.089 0.911 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.268 -5.568 22.159 22.849 hybrid contribution -0.387 -0.078 0.334 0.518 sum -0.120 -5.646 22.493 23.191 Atomic orbital electron populations 1.22161 0.96097 1.02090 1.02389 1.21279 0.94111 0.80988 1.03024 1.47255 1.70393 1.14947 1.04289 1.21489 0.97063 0.97222 0.86056 1.22253 0.96699 1.02651 1.01706 1.15925 0.78448 0.81279 0.84034 1.90995 1.56988 1.66161 1.29373 1.42645 1.69180 1.12522 1.08689 1.16957 0.94304 0.94671 0.84433 1.20302 1.00393 1.05748 0.98563 1.20531 0.97889 0.97711 0.91732 1.21287 1.00035 1.04245 0.99788 1.18878 0.89935 0.92102 0.87049 1.83585 1.48182 1.65862 1.14298 1.20787 1.18134 1.25882 0.81525 0.87547 1.24440 0.98519 0.97427 0.93496 1.69647 1.41140 1.43006 0.98129 0.86217 0.81604 0.81431 0.77989 1.19911 1.20828 1.18085 1.20197 1.04384 1.05760 0.90413 0.91672 0.92886 0.91898 0.89617 0.90806 0.90960 0.90021 0.91422 0.92119 0.92104 0.76264 0.87334 0.86781 0.84878 0.91126 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.16 0.38 -1.22 16 2 C 0.13 1.30 6.13 -4.04 -0.02 1.27 16 3 N -0.63 -7.10 2.47 -179.42 -0.44 -7.54 16 4 C 0.11 0.76 5.93 -4.04 -0.02 0.73 16 5 C -0.17 -1.13 10.24 37.16 0.38 -0.75 16 6 C 0.70 11.15 8.12 -86.91 -0.71 10.44 16 7 O -0.56 -11.63 13.35 5.29 0.07 -11.56 16 8 N -0.68 -10.01 5.22 -14.24 -0.07 -10.09 16 9 C 0.19 3.53 6.30 -83.71 -0.53 3.00 16 10 C -0.23 -3.87 9.96 -39.34 -0.39 -4.26 16 11 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 12 C -0.23 -5.21 9.17 -39.36 -0.36 -5.57 16 13 C 0.17 4.29 6.64 -39.14 -0.26 4.03 16 14 O -0.21 -6.02 8.58 0.04 0.00 -6.02 16 15 C -0.39 -11.35 9.95 30.88 0.31 -11.04 16 16 H 0.11 3.14 5.43 -52.49 -0.29 2.85 16 17 C 0.06 1.87 5.49 -17.52 -0.10 1.77 16 18 N -0.88 -26.11 13.96 55.48 0.77 -25.33 16 19 Si 0.90 22.76 28.62 -169.99 -4.86 17.90 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.26 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.19 -4.20 8.64 -39.21 -0.34 -4.54 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 1.05 7.41 -51.93 -0.38 0.67 16 28 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 29 H 0.07 0.46 6.30 -51.92 -0.33 0.14 16 30 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.40 4.32 6.52 -40.82 -0.27 4.05 16 35 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.13 3.08 5.63 -52.49 -0.30 2.78 16 38 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.13 3.24 6.22 -52.49 -0.33 2.91 16 LS Contribution 327.30 15.07 4.93 4.93 Total: -1.00 -33.90 327.30 -6.90 -40.80 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.24 Total: 4.54 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.06 Total: -7.62 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.26 Total: -42.96 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.07 Total: -17.59 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.86 Total: 17.90 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.90 -6.90 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048488601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.027 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds