Wall clock time and date at job start Tue Mar 31 2020 00:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47732 * 2 1 4 4 C 1.46494 * 119.99710 * 89.99741 * 3 2 1 5 5 C 1.53004 * 109.47180 * 90.00478 * 4 3 2 6 6 C 1.34774 * 119.99565 * 269.72854 * 3 2 1 7 7 O 1.21586 * 120.00761 * 359.97438 * 6 3 2 8 8 N 1.34786 * 119.99512 * 179.97438 * 6 3 2 9 9 C 1.39938 * 119.99973 * 175.51634 * 8 6 3 10 10 C 1.38960 * 120.03795 * 214.84573 * 9 8 6 11 11 C 1.38155 * 120.07142 * 179.74276 * 10 9 8 12 12 C 1.38168 * 120.13416 * 0.55389 * 11 10 9 13 13 C 1.38905 * 120.07428 * 359.70482 * 12 11 10 14 14 O 1.35749 * 120.03678 * 179.97438 * 13 12 11 15 15 C 1.34833 * 117.00065 * 5.35603 * 14 13 12 16 16 H 1.07994 * 119.99751 * 354.96823 * 15 14 13 17 17 C 1.38649 * 119.99923 * 174.96717 * 15 14 13 18 18 N 1.31555 * 119.99840 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00262 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47221 * 90.00119 * 19 17 15 21 21 H 1.48497 * 109.47282 * 210.00069 * 19 17 15 22 22 H 1.48497 * 109.47187 * 330.00183 * 19 17 15 23 23 C 1.38711 * 120.03741 * 35.12063 * 9 8 6 24 24 H 1.08991 * 109.47388 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46969 * 300.00349 * 1 2 3 26 26 H 1.09005 * 109.46747 * 59.99738 * 1 2 3 27 27 H 1.09003 * 109.46969 * 239.99651 * 2 1 3 28 28 H 1.09005 * 109.46747 * 120.00262 * 2 1 3 29 29 H 1.09009 * 109.46872 * 210.00181 * 4 3 2 30 30 H 1.08998 * 109.47577 * 329.99984 * 4 3 2 31 31 H 1.08996 * 109.47228 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.46982 * 299.99711 * 5 4 3 33 33 H 1.09004 * 109.46905 * 59.99924 * 5 4 3 34 34 H 0.97002 * 119.99623 * 355.51022 * 8 6 3 35 35 H 1.08000 * 119.95941 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.93440 * 180.27838 * 11 10 9 37 37 H 1.08001 * 119.96268 * 179.72226 * 12 11 10 38 38 H 0.96998 * 119.99986 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.06861 * 359.95987 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2626 2.0716 1.2687 5 6 3.7077 1.8312 1.7104 6 6 2.2484 2.0145 -1.1672 7 8 2.0508 1.4396 -2.2202 8 7 2.6973 3.2854 -1.1672 9 6 3.0253 3.9116 -2.3749 10 6 4.0803 4.8146 -2.4262 11 6 4.4081 5.4292 -3.6193 12 6 3.6814 5.1570 -4.7624 13 6 2.6222 4.2594 -4.7166 14 8 1.9084 3.9929 -5.8401 15 6 2.3464 4.5458 -6.9892 16 1 3.1792 5.2331 -6.9746 17 6 1.7275 4.2318 -8.1895 18 7 2.1552 4.7708 -9.3108 19 14 0.2875 3.0423 -8.2149 20 1 -0.9805 3.7963 -8.0444 21 1 0.2638 2.3212 -9.5128 22 1 0.4341 2.0638 -7.1076 23 6 2.2941 3.6360 -3.5210 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0957 3.1410 1.1384 30 1 1.5818 1.6876 2.0284 31 1 3.8895 2.3453 2.6542 32 1 3.8745 0.7620 1.8408 33 1 4.3885 2.2153 0.9508 34 1 2.7929 3.7660 -0.3300 35 1 4.6474 5.0326 -1.5333 36 1 5.2313 6.1272 -3.6575 37 1 3.9372 5.6424 -5.6926 38 1 1.7221 4.5515 -10.1505 39 1 1.4713 2.9374 -3.4829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048488601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:24 Heat of formation + Delta-G solvation = -41.354497 kcal Electronic energy + Delta-G solvation = -21540.543476 eV Core-core repulsion = 18255.705957 eV Total energy + Delta-G solvation = -3284.837518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.88821 -40.64901 -38.61279 -37.20994 -35.69002 -34.44919 -32.86724 -31.37819 -30.73349 -29.48482 -27.23416 -24.91049 -24.48211 -23.49017 -22.73596 -20.88167 -19.92730 -19.55557 -18.78889 -17.61410 -16.96314 -16.81606 -16.57289 -15.83509 -15.76557 -15.62986 -15.40951 -14.89163 -14.72885 -14.39376 -14.33032 -14.20063 -13.79756 -13.44917 -13.26208 -12.97402 -12.95383 -12.75678 -12.60504 -12.50271 -12.12302 -12.02422 -11.91936 -11.51897 -11.31998 -10.95546 -10.87248 -9.82741 -9.34587 -8.88979 -8.51834 -6.23468 0.44027 0.65391 1.26149 1.30389 1.48085 1.50356 2.02691 2.26250 2.72154 2.78303 3.09413 3.21224 3.98811 4.08897 4.12508 4.21316 4.35391 4.39758 4.43999 4.48853 4.54252 4.63557 4.71785 4.75507 4.81823 4.96001 4.99673 5.03364 5.27213 5.33971 5.35941 5.38155 5.45485 5.61589 5.68148 5.79393 5.88353 5.91928 6.23621 6.83031 6.84000 7.45523 7.60460 8.59720 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020871 B = 0.004667 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.272566 B = 5998.653941 C = 7196.336571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.124 3.876 3 N -0.620 5.620 4 C 0.097 3.903 5 C -0.170 4.170 6 C 0.692 3.308 7 O -0.618 6.618 8 N -0.666 5.666 9 C 0.199 3.801 10 C -0.195 4.195 11 C -0.050 4.050 12 C -0.249 4.249 13 C 0.134 3.866 14 O -0.250 6.250 15 C -0.398 4.398 16 H 0.089 0.911 17 C 0.016 3.984 18 N -0.919 5.919 19 Si 0.962 3.038 20 H -0.263 1.263 21 H -0.262 1.262 22 H -0.277 1.277 23 C -0.203 4.203 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.023 0.977 27 H 0.055 0.945 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.424 0.576 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.115 0.885 38 H 0.285 0.715 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.506 -4.884 27.722 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.002 3.998 3 N -0.356 5.356 4 C -0.025 4.025 5 C -0.228 4.228 6 C 0.394 3.606 7 O -0.497 6.497 8 N -0.317 5.317 9 C 0.103 3.897 10 C -0.216 4.216 11 C -0.068 4.068 12 C -0.269 4.269 13 C 0.084 3.916 14 O -0.158 6.158 15 C -0.474 4.474 16 H 0.106 0.894 17 C -0.183 4.183 18 N -0.560 5.560 19 Si 0.785 3.215 20 H -0.187 1.187 21 H -0.186 1.186 22 H -0.203 1.203 23 C -0.225 4.225 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.265 0.735 35 H 0.182 0.818 36 H 0.175 0.825 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.123 -5.476 26.808 27.384 hybrid contribution -0.501 -0.100 -0.662 0.836 sum 0.621 -5.576 26.146 26.741 Atomic orbital electron populations 1.22107 0.95620 1.02944 1.01417 1.21450 0.94496 0.80440 1.03464 1.47384 1.68734 1.15217 1.04285 1.21875 0.98480 0.97690 0.84414 1.22218 0.95372 1.02887 1.02335 1.16250 0.78228 0.81454 0.84632 1.90975 1.59285 1.67440 1.32049 1.42432 1.68682 1.12290 1.08292 1.17105 0.93688 0.94346 0.84529 1.20881 0.98367 1.02436 0.99877 1.21009 0.97803 0.97577 0.90450 1.21345 1.00358 1.04234 1.00958 1.19377 0.91471 0.93934 0.86791 1.83533 1.49917 1.67602 1.14744 1.20789 1.18006 1.25954 0.82701 0.89362 1.25144 1.00941 0.99061 0.93159 1.69707 1.42803 1.44798 0.98672 0.85352 0.79106 0.79179 0.77888 1.18728 1.18599 1.20267 1.20210 1.04941 1.05881 0.91478 0.90043 0.90779 0.95733 0.92667 0.86784 0.89800 0.87168 0.88878 0.92243 0.93747 0.73517 0.81761 0.82450 0.86755 0.90519 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 10.24 71.98 0.74 -2.13 16 2 C 0.12 2.28 6.13 86.38 0.53 2.81 16 3 N -0.62 -12.57 2.47 -839.82 -2.08 -14.64 16 4 C 0.10 0.97 5.93 86.38 0.51 1.48 16 5 C -0.17 -1.45 10.24 71.98 0.74 -0.71 16 6 C 0.69 21.45 8.12 179.05 1.45 22.91 16 7 O -0.62 -26.68 13.35 -3.99 -0.05 -26.73 16 8 N -0.67 -17.92 5.22 -317.22 -1.65 -19.58 16 9 C 0.20 7.02 6.30 38.13 0.24 7.26 16 10 C -0.19 -5.72 9.96 22.42 0.22 -5.50 16 11 C -0.05 -1.68 10.03 22.23 0.22 -1.45 16 12 C -0.25 -11.33 9.17 22.41 0.21 -11.13 16 13 C 0.13 6.96 6.64 22.56 0.15 7.11 16 14 O -0.25 -15.03 8.58 -22.75 -0.20 -15.23 16 15 C -0.40 -24.83 9.95 67.92 0.68 -24.15 16 16 H 0.09 5.62 5.43 -2.91 -0.02 5.60 16 17 C 0.02 0.95 5.49 84.83 0.47 1.42 16 18 N -0.92 -56.66 13.96 21.61 0.30 -56.36 16 19 Si 0.96 49.10 28.62 68.60 1.96 51.07 16 20 H -0.26 -12.75 7.11 99.48 0.71 -12.05 16 21 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.28 -14.93 7.11 99.48 0.71 -14.22 16 23 C -0.20 -9.49 8.64 22.51 0.19 -9.29 16 24 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.05 1.37 7.41 -2.39 -0.02 1.36 16 28 H 0.11 1.21 8.07 -2.38 -0.02 1.19 16 29 H 0.08 0.67 6.30 -2.38 -0.02 0.65 16 30 H 0.11 0.58 8.07 -2.39 -0.02 0.56 16 31 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 33 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.42 7.29 6.52 -92.71 -0.60 6.69 16 35 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 36 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.11 5.59 5.63 -2.91 -0.02 5.57 16 38 H 0.29 16.11 8.31 -92.71 -0.77 15.34 16 39 H 0.11 5.64 6.22 -2.91 -0.02 5.62 16 Total: -1.00 -82.02 327.30 5.09 -76.93 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.46 Total: 15.91 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 6.35 Total: -11.36 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -3.43 Total: -90.58 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.25 Total: -41.96 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 1.96 Total: 51.07 kcal Total: -82.02 5.09 -76.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048488601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.571 kcal (2) G-P(sol) polarization free energy of solvation -82.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds