Wall clock time and date at job start Tue Mar 31 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00213 * 2 1 4 4 C 1.38231 * 110.99661 * 123.95014 * 2 1 3 5 5 N 1.32429 * 119.83470 * 295.18625 * 4 2 1 6 6 C 1.31839 * 121.78420 * 180.02562 * 5 4 2 7 7 C 1.38399 * 121.22835 * 0.02562 * 6 5 4 8 8 C 1.38308 * 119.52004 * 359.97438 * 7 6 5 9 9 C 1.40040 * 118.35904 * 0.02562 * 8 7 6 10 10 C 1.47280 * 120.61474 * 179.97438 * 9 8 7 11 11 O 1.21529 * 120.00340 * 185.37605 * 10 9 8 12 12 O 1.34772 * 119.99800 * 5.37090 * 10 9 8 13 13 C 1.45203 * 116.99838 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46944 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46725 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46825 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99790 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00186 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00289 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99869 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47157 * 90.00092 * 20 18 16 22 22 H 1.48500 * 109.46993 * 209.99909 * 20 18 16 23 23 H 1.48496 * 109.46948 * 329.99607 * 20 18 16 24 24 H 1.08996 * 109.47255 * 296.04916 * 1 2 3 25 25 H 1.08998 * 109.47070 * 56.04767 * 1 2 3 26 26 H 1.09002 * 109.46872 * 176.04692 * 1 2 3 27 27 H 1.08999 * 109.46786 * 188.73479 * 3 2 1 28 28 H 1.09002 * 109.46454 * 308.72996 * 3 2 1 29 29 H 1.08994 * 109.47104 * 68.72991 * 3 2 1 30 30 H 1.07997 * 119.38443 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.23600 * 179.97438 * 7 6 5 32 32 H 1.07993 * 120.82079 * 179.72543 * 8 7 6 33 33 H 1.08997 * 109.47286 * 299.99793 * 13 12 10 34 34 H 1.08992 * 109.47260 * 59.99877 * 13 12 10 35 35 H 1.08997 * 109.46666 * 299.99813 * 14 13 12 36 36 H 1.08997 * 109.46989 * 60.00160 * 14 13 12 37 37 H 1.08997 * 109.47454 * 299.99402 * 15 14 13 38 38 H 1.08997 * 109.47199 * 60.00359 * 15 14 13 39 39 H 0.96996 * 120.00048 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9643 -0.7207 1.0705 5 7 1.7439 -0.2997 2.3066 6 6 2.1987 -0.9566 3.3554 7 6 2.9312 -2.1218 3.2100 8 6 3.1922 -2.6089 1.9421 9 6 2.7003 -1.8964 0.8414 10 6 2.9495 -2.3699 -0.5307 11 8 2.6030 -1.6937 -1.4792 12 8 3.5618 -3.5530 -0.7345 13 6 3.7752 -3.9560 -2.1131 14 6 4.4771 -5.3152 -2.1443 15 6 4.7014 -5.7400 -3.5969 16 6 5.3933 -7.0784 -3.6276 17 1 5.6473 -7.5764 -2.7035 18 6 5.7012 -7.6678 -4.8355 19 7 6.3046 -8.8360 -4.8623 20 14 5.2613 -6.8069 -6.4338 21 1 6.3886 -5.9363 -6.8538 22 1 5.0002 -7.8210 -7.4867 23 1 4.0452 -5.9790 -6.2317 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0740 1.3465 -0.1561 28 1 1.5254 1.9410 -0.8017 29 1 1.7777 1.8442 0.9576 30 1 1.9958 -0.5784 4.3464 31 1 3.2963 -2.6468 4.0803 32 1 3.7653 -3.5138 1.8041 33 1 2.8145 -4.0319 -2.6223 34 1 4.3956 -3.2146 -2.6165 35 1 5.4378 -5.2396 -1.6350 36 1 3.8563 -6.0563 -1.6411 37 1 3.7405 -5.8157 -4.1058 38 1 5.3220 -4.9990 -4.1005 39 1 6.5209 -9.2508 -5.7121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058786678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:39 Heat of formation + Delta-G solvation = -35.335913 kcal Electronic energy + Delta-G solvation = -20990.405208 eV Core-core repulsion = 17705.828675 eV Total energy + Delta-G solvation = -3284.576533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.13669 -39.60588 -37.22195 -36.22299 -34.06128 -32.98818 -31.79016 -30.95552 -27.83199 -27.67486 -25.51975 -24.95589 -23.04598 -21.85614 -21.02694 -20.23498 -17.86925 -17.46766 -17.02942 -16.74130 -16.32488 -16.04739 -15.50283 -15.16900 -14.29656 -14.25369 -14.12234 -13.85361 -13.59743 -13.17792 -12.77408 -12.70841 -12.48290 -12.25914 -12.21690 -11.93044 -11.87484 -11.02809 -10.93447 -10.48146 -10.36759 -10.24894 -10.21967 -9.96504 -9.77941 -9.70754 -9.35696 -9.24108 -8.72923 -8.56180 -6.06604 -4.05565 0.27078 0.79146 2.60219 2.78786 3.30782 3.34449 3.38366 3.42182 3.45274 4.08030 4.43744 4.48954 4.54733 4.71366 4.82268 5.05796 5.13775 5.20098 5.26978 5.29263 5.39238 5.50507 5.54540 5.60332 5.64684 5.67078 5.71620 5.90788 6.02696 6.37520 6.41139 6.55427 6.70442 6.83087 6.96047 7.22637 7.34018 7.43131 7.73678 8.01271 8.50262 8.97631 9.55105 11.06589 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029116 B = 0.003286 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.436433 B = 8518.157011 C = 9284.458337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.481 5.481 3 C 0.033 3.967 4 C 0.350 3.650 5 N -0.519 5.519 6 C 0.138 3.862 7 C -0.188 4.188 8 C -0.016 4.016 9 C -0.144 4.144 10 C 0.500 3.500 11 O -0.467 6.467 12 O -0.359 6.359 13 C 0.070 3.930 14 C -0.101 4.101 15 C -0.011 4.011 16 C -0.521 4.521 17 H 0.074 0.926 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.879 3.121 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.161 0.839 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 18.587 16.621 26.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.203 5.203 3 C -0.113 4.113 4 C 0.121 3.879 5 N -0.232 5.232 6 C -0.021 4.021 7 C -0.208 4.208 8 C -0.042 4.042 9 C -0.149 4.149 10 C 0.341 3.659 11 O -0.352 6.352 12 O -0.277 6.277 13 C -0.003 4.003 14 C -0.139 4.139 15 C -0.048 4.048 16 C -0.559 4.559 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.541 5.541 20 Si 0.706 3.294 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 H 0.058 0.942 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.178 0.822 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.247 19.186 15.825 26.898 hybrid contribution 0.084 -0.060 -0.411 0.424 sum -10.163 19.125 15.414 26.583 Atomic orbital electron populations 1.22374 0.84723 1.02754 1.01419 1.59944 1.09285 1.15179 1.35938 1.22371 1.00987 0.86696 1.01295 1.19811 0.90524 0.90001 0.87541 1.67908 1.22169 1.33783 0.99317 1.22840 0.91044 0.90888 0.97349 1.22175 1.01811 0.98483 0.98354 1.22063 0.93092 0.97999 0.91091 1.20011 1.04740 0.97733 0.92396 1.20552 0.76200 0.80047 0.89062 1.90892 1.46207 1.55310 1.42840 1.86531 1.71174 1.36145 1.33815 1.23461 1.01072 0.98275 0.77532 1.21556 0.99811 0.91844 1.00666 1.19520 0.96988 0.97300 0.91016 1.21060 1.38054 1.02264 0.94555 0.90816 1.25016 0.94507 0.94726 0.99169 1.69907 1.41601 1.16280 1.26309 0.86785 0.79595 0.79588 0.83396 1.20198 1.21299 1.18925 0.94215 0.90294 0.91478 0.91409 0.90460 0.93993 0.82151 0.83639 0.82598 0.91522 0.91526 0.91591 0.91569 0.96255 0.96694 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.46 60.06 0.57 0.92 16 2 N -0.48 -6.08 2.96 -188.74 -0.56 -6.64 16 3 C 0.03 0.35 9.52 60.07 0.57 0.92 16 4 C 0.35 4.41 5.34 -155.19 -0.83 3.58 16 5 N -0.52 -5.69 9.42 -12.19 -0.11 -5.81 16 6 C 0.14 1.10 11.16 -17.49 -0.20 0.91 16 7 C -0.19 -1.41 10.08 -39.50 -0.40 -1.81 16 8 C -0.02 -0.16 9.73 -38.88 -0.38 -0.54 16 9 C -0.14 -1.87 5.91 -104.66 -0.62 -2.49 16 10 C 0.50 7.91 7.88 34.41 0.27 8.18 16 11 O -0.47 -8.37 14.88 -19.29 -0.29 -8.66 16 12 O -0.36 -5.84 9.56 -40.69 -0.39 -6.23 16 13 C 0.07 1.22 5.48 37.16 0.20 1.43 16 14 C -0.10 -2.00 5.53 -26.73 -0.15 -2.15 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 16 C -0.52 -14.81 9.66 -34.44 -0.33 -15.15 16 17 H 0.07 2.23 7.99 -52.49 -0.42 1.82 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 20 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 24 H 0.04 0.39 7.93 -51.93 -0.41 -0.02 16 25 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.68 8.04 -51.93 -0.42 0.27 16 29 H 0.04 0.41 7.68 -51.93 -0.40 0.01 16 30 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 31 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.16 1.40 7.71 -52.49 -0.40 0.99 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 38 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -33.30 333.70 -7.50 -40.79 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -5.79 Total: -3.83 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -1.50 Total: -4.70 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.10 Total: -39.46 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.68 Total: -14.89 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.30 -7.50 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058786678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.458 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds