Wall clock time and date at job start Tue Mar 31 2020 01:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00213 * 2 1 4 4 C 1.38231 * 110.99661 * 123.95014 * 2 1 3 5 5 N 1.32429 * 119.83470 * 295.18625 * 4 2 1 6 6 C 1.31839 * 121.78420 * 180.02562 * 5 4 2 7 7 C 1.38399 * 121.22835 * 0.02562 * 6 5 4 8 8 C 1.38308 * 119.52004 * 359.97438 * 7 6 5 9 9 C 1.40040 * 118.35904 * 0.02562 * 8 7 6 10 10 C 1.47280 * 120.61474 * 179.97438 * 9 8 7 11 11 O 1.21529 * 120.00340 * 185.37605 * 10 9 8 12 12 O 1.34772 * 119.99800 * 5.37090 * 10 9 8 13 13 C 1.45203 * 116.99838 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46944 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46725 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46825 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99790 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00186 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00289 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99869 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47157 * 90.00092 * 20 18 16 22 22 H 1.48500 * 109.46993 * 209.99909 * 20 18 16 23 23 H 1.48496 * 109.46948 * 329.99607 * 20 18 16 24 24 H 1.08996 * 109.47255 * 296.04916 * 1 2 3 25 25 H 1.08998 * 109.47070 * 56.04767 * 1 2 3 26 26 H 1.09002 * 109.46872 * 176.04692 * 1 2 3 27 27 H 1.08999 * 109.46786 * 188.73479 * 3 2 1 28 28 H 1.09002 * 109.46454 * 308.72996 * 3 2 1 29 29 H 1.08994 * 109.47104 * 68.72991 * 3 2 1 30 30 H 1.07997 * 119.38443 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.23600 * 179.97438 * 7 6 5 32 32 H 1.07993 * 120.82079 * 179.72543 * 8 7 6 33 33 H 1.08997 * 109.47286 * 299.99793 * 13 12 10 34 34 H 1.08992 * 109.47260 * 59.99877 * 13 12 10 35 35 H 1.08997 * 109.46666 * 299.99813 * 14 13 12 36 36 H 1.08997 * 109.46989 * 60.00160 * 14 13 12 37 37 H 1.08997 * 109.47454 * 299.99402 * 15 14 13 38 38 H 1.08997 * 109.47199 * 60.00359 * 15 14 13 39 39 H 0.96996 * 120.00048 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9643 -0.7207 1.0705 5 7 1.7439 -0.2997 2.3066 6 6 2.1987 -0.9566 3.3554 7 6 2.9312 -2.1218 3.2100 8 6 3.1922 -2.6089 1.9421 9 6 2.7003 -1.8964 0.8414 10 6 2.9495 -2.3699 -0.5307 11 8 2.6030 -1.6937 -1.4792 12 8 3.5618 -3.5530 -0.7345 13 6 3.7752 -3.9560 -2.1131 14 6 4.4771 -5.3152 -2.1443 15 6 4.7014 -5.7400 -3.5969 16 6 5.3933 -7.0784 -3.6276 17 1 5.6473 -7.5764 -2.7035 18 6 5.7012 -7.6678 -4.8355 19 7 6.3046 -8.8360 -4.8623 20 14 5.2613 -6.8069 -6.4338 21 1 6.3886 -5.9363 -6.8538 22 1 5.0002 -7.8210 -7.4867 23 1 4.0452 -5.9790 -6.2317 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0740 1.3465 -0.1561 28 1 1.5254 1.9410 -0.8017 29 1 1.7777 1.8442 0.9576 30 1 1.9958 -0.5784 4.3464 31 1 3.2963 -2.6468 4.0803 32 1 3.7653 -3.5138 1.8041 33 1 2.8145 -4.0319 -2.6223 34 1 4.3956 -3.2146 -2.6165 35 1 5.4378 -5.2396 -1.6350 36 1 3.8563 -6.0563 -1.6411 37 1 3.7405 -5.8157 -4.1058 38 1 5.3220 -4.9990 -4.1005 39 1 6.5209 -9.2508 -5.7121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058786678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:38 Heat of formation + Delta-G solvation = -55.193750 kcal Electronic energy + Delta-G solvation = -20991.266308 eV Core-core repulsion = 17705.828675 eV Total energy + Delta-G solvation = -3285.437633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.03111 -40.75112 -38.05318 -37.51858 -35.89627 -34.05424 -33.57603 -31.74070 -29.45768 -28.63074 -26.50909 -25.82286 -24.64990 -22.75669 -22.15459 -21.96028 -19.00883 -18.90748 -18.27899 -17.85561 -17.61868 -17.18438 -16.40693 -16.27698 -15.86269 -15.57636 -15.08443 -14.91939 -14.79590 -14.44654 -14.12780 -13.85467 -13.76317 -13.54814 -13.21785 -13.00685 -12.83854 -12.75020 -12.56256 -12.08219 -11.96797 -11.75471 -11.46607 -11.37389 -11.33603 -11.04206 -10.91326 -10.77104 -10.11387 -9.56283 -8.29960 -6.34742 -0.56230 0.05847 1.37323 1.38800 1.50624 1.54395 1.59871 2.36110 2.55651 2.63985 3.05337 3.35907 3.63630 3.85300 3.91740 4.02906 4.03666 4.09095 4.31512 4.33725 4.39106 4.42933 4.52635 4.61325 4.75732 4.77798 4.84275 4.87486 4.93500 4.97832 5.04282 5.32879 5.38654 5.49930 5.51918 5.63063 5.76507 6.14799 6.26267 6.68512 6.72437 6.79997 7.29845 8.86576 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029116 B = 0.003286 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.436433 B = 8518.157011 C = 9284.458337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.507 5.507 3 C 0.038 3.962 4 C 0.339 3.661 5 N -0.533 5.533 6 C 0.143 3.857 7 C -0.172 4.172 8 C -0.020 4.020 9 C -0.174 4.174 10 C 0.500 3.500 11 O -0.495 6.495 12 O -0.359 6.359 13 C 0.079 3.921 14 C -0.091 4.091 15 C -0.010 4.010 16 C -0.533 4.533 17 H 0.037 0.963 18 C 0.006 3.994 19 N -0.950 5.950 20 Si 0.949 3.051 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.247 1.247 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.201 0.799 31 H 0.185 0.815 32 H 0.163 0.837 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.024 0.976 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.718 20.316 17.837 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.230 5.230 3 C -0.108 4.108 4 C 0.111 3.889 5 N -0.246 5.246 6 C -0.015 4.015 7 C -0.191 4.191 8 C -0.046 4.046 9 C -0.179 4.179 10 C 0.344 3.656 11 O -0.383 6.383 12 O -0.276 6.276 13 C 0.006 3.994 14 C -0.128 4.128 15 C -0.047 4.047 16 C -0.571 4.571 17 H 0.055 0.945 18 C -0.191 4.191 19 N -0.590 5.590 20 Si 0.772 3.228 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.170 1.170 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.203 0.797 32 H 0.180 0.820 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.087 20.927 17.067 29.191 hybrid contribution 0.364 -0.632 -0.584 0.934 sum -10.722 20.295 16.483 28.259 Atomic orbital electron populations 1.22348 0.83939 1.02284 1.02210 1.59912 1.10200 1.16050 1.36820 1.22344 1.00332 0.86151 1.02012 1.19861 0.90813 0.89976 0.88265 1.67977 1.22919 1.34419 0.99251 1.23596 0.89349 0.90479 0.98111 1.22578 1.00212 0.97946 0.98392 1.22265 0.92864 0.98029 0.91431 1.19993 1.07301 0.99170 0.91466 1.21094 0.75148 0.79205 0.90189 1.90865 1.47570 1.55885 1.43984 1.86514 1.71535 1.36853 1.32736 1.23144 1.00869 0.96934 0.78499 1.21311 1.00108 0.93187 0.98229 1.19449 0.96617 0.94936 0.93702 1.21406 1.38191 1.04173 0.93338 0.94501 1.25988 0.94386 0.95418 1.03344 1.70055 1.43239 1.18190 1.27534 0.85681 0.80213 0.78667 0.78267 1.19073 1.20882 1.17013 0.93621 0.89169 0.92600 0.92515 0.89217 0.93519 0.78271 0.79742 0.81964 0.91378 0.91243 0.91699 0.91796 0.95702 0.95783 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.46 127.69 1.21 2.00 16 2 N -0.51 -12.65 2.96 -751.03 -2.22 -14.88 16 3 C 0.04 0.78 9.52 127.69 1.22 1.99 16 4 C 0.34 8.28 5.34 133.67 0.71 8.99 16 5 N -0.53 -10.61 9.42 -192.48 -1.81 -12.42 16 6 C 0.14 1.79 11.16 84.73 0.95 2.74 16 7 C -0.17 -1.95 10.08 22.32 0.23 -1.72 16 8 C -0.02 -0.36 9.73 22.72 0.22 -0.14 16 9 C -0.17 -4.43 5.91 -19.89 -0.12 -4.55 16 10 C 0.50 15.80 7.88 70.20 0.55 16.36 16 11 O -0.50 -17.92 14.88 19.74 0.29 -17.63 16 12 O -0.36 -11.53 9.56 -56.83 -0.54 -12.08 16 13 C 0.08 2.72 5.48 71.98 0.39 3.11 16 14 C -0.09 -3.55 5.53 30.60 0.17 -3.38 16 15 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 16 C -0.53 -30.76 9.66 25.60 0.25 -30.52 16 17 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 18 C 0.01 0.33 5.47 84.65 0.46 0.79 16 19 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 20 Si 0.95 44.33 27.47 68.60 1.88 46.22 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 24 H 0.05 0.85 7.93 -2.39 -0.02 0.83 16 25 H 0.09 1.56 8.07 -2.39 -0.02 1.54 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.09 1.52 8.04 -2.39 -0.02 1.51 16 29 H 0.05 0.88 7.68 -2.39 -0.02 0.86 16 30 H 0.20 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.19 0.65 8.06 -2.91 -0.02 0.62 16 32 H 0.16 2.64 7.71 -2.91 -0.02 2.62 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.06 2.50 8.14 -2.39 -0.02 2.49 16 37 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 38 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 39 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -73.39 333.70 5.23 -68.16 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.97 Total: 6.65 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 6.36 Total: -4.66 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -3.74 Total: -86.66 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.25 Total: -29.71 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.22 kcal Total: -73.39 5.23 -68.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058786678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.968 kcal (2) G-P(sol) polarization free energy of solvation -73.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds