Wall clock time and date at job start Tue Mar 31 2020 01:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99634 * 2 1 4 4 C 1.52996 * 109.47284 * 199.80195 * 3 2 1 5 5 O 1.42907 * 109.47136 * 64.93725 * 4 3 2 6 6 C 1.35895 * 116.99992 * 180.02562 * 5 4 3 7 7 C 1.38728 * 120.05781 * 180.02562 * 6 5 4 8 8 C 1.38143 * 119.94866 * 179.97438 * 7 6 5 9 9 C 1.38259 * 120.05385 * 0.02562 * 8 7 6 10 10 C 1.38262 * 120.11214 * 359.95242 * 9 8 7 11 11 C 1.38141 * 120.05952 * 0.05018 * 10 9 8 12 12 C 1.46901 * 111.00363 * 123.95329 * 2 1 3 13 13 C 1.50698 * 109.46592 * 66.05110 * 12 2 1 14 14 O 1.21294 * 120.00416 * 359.97438 * 13 12 2 15 15 N 1.34776 * 119.99911 * 180.02562 * 13 12 2 16 16 C 1.37101 * 120.00070 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00195 * 359.97438 * 16 15 13 18 18 C 1.38949 * 119.99704 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00486 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99912 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47204 * 59.99642 * 20 18 16 22 22 H 1.48500 * 109.47287 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46808 * 299.99731 * 20 18 16 24 24 H 1.08999 * 109.47462 * 65.03510 * 1 2 3 25 25 H 1.09000 * 109.46962 * 185.02911 * 1 2 3 26 26 H 1.08999 * 109.47287 * 305.02876 * 1 2 3 27 27 H 1.08999 * 109.46853 * 79.80211 * 3 2 1 28 28 H 1.08997 * 109.47455 * 319.80582 * 3 2 1 29 29 H 1.09004 * 109.47242 * 304.94444 * 4 3 2 30 30 H 1.08997 * 109.47537 * 184.94274 * 4 3 2 31 31 H 1.08002 * 120.02300 * 359.70247 * 7 6 5 32 32 H 1.07998 * 119.97380 * 180.02562 * 8 7 6 33 33 H 1.08006 * 119.94697 * 179.97438 * 9 8 7 34 34 H 1.08007 * 119.97406 * 180.02562 * 10 9 8 35 35 H 1.07997 * 120.03394 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.46931 * 186.04384 * 12 2 1 37 37 H 1.08997 * 109.47268 * 306.05145 * 12 2 1 38 38 H 0.96999 * 119.99769 * 359.97438 * 15 13 12 39 39 H 0.96999 * 120.00253 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4451 1.3614 -0.4887 5 8 3.4849 0.9399 -1.8536 6 6 4.7071 0.8752 -2.4440 7 6 4.8192 0.4742 -3.7673 8 6 6.0628 0.4098 -4.3654 9 6 7.1953 0.7439 -3.6461 10 6 7.0863 1.1443 -2.3272 11 6 5.8450 1.2103 -1.7245 12 6 1.9955 -0.7660 1.1376 13 6 1.6371 -2.2204 0.9727 14 8 1.0048 -2.5831 0.0032 15 7 2.0182 -3.1180 1.9030 16 6 1.6917 -4.4411 1.7533 17 1 1.1287 -4.7641 0.8901 18 6 2.0851 -5.3665 2.7122 19 7 2.7706 -4.9737 3.7623 20 14 1.6408 -7.1694 2.5079 21 1 2.2325 -7.6853 1.2475 22 1 2.1725 -7.9437 3.6582 23 1 0.1636 -7.3124 2.4562 24 1 -0.3634 0.4337 -0.9316 25 1 -0.3633 -1.0237 0.0901 26 1 -0.3634 0.5899 0.8415 27 1 1.9557 1.7759 1.0114 28 1 1.3927 1.9920 -0.6632 29 1 4.0294 0.6725 0.1214 30 1 3.8636 2.3645 -0.4058 31 1 3.9354 0.2085 -4.3282 32 1 6.1505 0.0981 -5.3957 33 1 8.1667 0.6925 -4.1153 34 1 7.9724 1.4052 -1.7674 35 1 5.7604 1.5227 -0.6941 36 1 3.0798 -0.6610 1.1755 37 1 1.5612 -0.3873 2.0628 38 1 2.5235 -2.8278 2.6785 39 1 3.0449 -5.6197 4.4319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065503633.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:56 Heat of formation + Delta-G solvation = -36.516908 kcal Electronic energy + Delta-G solvation = -21090.772376 eV Core-core repulsion = 17806.144631 eV Total energy + Delta-G solvation = -3284.627745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04365 -38.63099 -37.45289 -36.09402 -33.82667 -31.22261 -31.17518 -30.51352 -29.07122 -27.96918 -24.97966 -24.25198 -22.56887 -22.18431 -20.84239 -19.13804 -18.26051 -17.79273 -16.48429 -16.13233 -15.82802 -15.55138 -14.98873 -14.62452 -14.53446 -14.38313 -13.73625 -13.58164 -13.46210 -13.37372 -12.93775 -12.60815 -12.19777 -12.00291 -11.64061 -11.56874 -11.47572 -11.29949 -11.18750 -10.92813 -10.76844 -10.57257 -10.41778 -10.18675 -9.43732 -9.01721 -8.39669 -8.13587 -7.94692 -7.82337 -6.39058 -3.79662 1.32859 1.47399 3.22170 3.27403 3.28281 3.32244 3.80091 3.93044 4.01453 4.26294 4.75193 4.84985 4.93518 5.05486 5.08359 5.13170 5.22576 5.30283 5.35900 5.38973 5.50824 5.64282 5.67535 5.75417 5.81105 5.96254 5.99714 6.01606 6.31180 6.32734 6.39597 6.51077 6.56075 6.78526 7.29169 7.37876 7.55750 7.57773 8.09214 8.65095 9.21093 9.57379 10.09782 10.78790 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.003948 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.735962 B = 7089.906294 C = 8000.806183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.513 5.513 3 C 0.054 3.946 4 C 0.065 3.935 5 O -0.292 6.292 6 C 0.139 3.861 7 C -0.154 4.154 8 C -0.082 4.082 9 C -0.168 4.168 10 C -0.082 4.082 11 C -0.214 4.214 12 C 0.042 3.958 13 C 0.445 3.555 14 O -0.574 6.574 15 N -0.565 5.565 16 C -0.298 4.298 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.904 5.904 20 Si 0.930 3.070 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.013 0.987 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.391 0.609 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.991 15.306 -7.406 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.237 5.237 3 C -0.074 4.074 4 C -0.011 4.011 5 O -0.205 6.205 6 C 0.093 3.907 7 C -0.172 4.172 8 C -0.100 4.100 9 C -0.186 4.186 10 C -0.100 4.100 11 C -0.233 4.233 12 C -0.089 4.089 13 C 0.230 3.770 14 O -0.458 6.458 15 N -0.202 5.202 16 C -0.428 4.428 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.545 5.545 20 Si 0.757 3.243 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.224 0.776 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.582 14.667 -8.395 17.798 hybrid contribution 0.149 -0.296 1.498 1.534 sum 5.731 14.371 -6.897 16.940 Atomic orbital electron populations 1.22503 0.86328 1.04150 0.99214 1.61527 1.08759 1.10795 1.42581 1.22179 0.94239 0.91307 0.99717 1.22895 0.98330 0.98639 0.81192 1.86222 1.25637 1.82078 1.26551 1.19133 0.84561 0.94444 0.92589 1.20490 0.98660 1.05048 0.93051 1.20948 0.91685 0.97696 0.99657 1.21002 0.98524 1.04082 0.95005 1.20917 0.96686 0.97467 0.94897 1.21274 0.92808 1.08418 1.00791 1.21939 1.00558 0.94577 0.91856 1.19703 0.85460 0.86598 0.85216 1.90496 1.43724 1.80069 1.31506 1.41859 1.49560 1.07361 1.21455 1.19654 1.32909 0.82325 1.07900 0.87976 1.25243 0.96830 1.00514 0.95309 1.69603 1.38119 1.35834 1.10950 0.85927 0.78889 0.81758 0.77705 1.19886 1.21000 1.19931 0.91979 0.88677 0.96879 0.92625 0.89734 0.91799 0.91994 0.85170 0.85613 0.86237 0.86091 0.85666 0.89749 0.93463 0.77571 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.15 60.06 0.55 0.98 16 2 N -0.51 -8.82 4.38 -244.38 -1.07 -9.89 16 3 C 0.05 0.69 5.38 -3.82 -0.02 0.67 16 4 C 0.07 0.82 4.93 37.16 0.18 1.00 16 5 O -0.29 -4.51 10.08 -19.41 -0.20 -4.71 16 6 C 0.14 1.99 6.69 -39.22 -0.26 1.73 16 7 C -0.15 -2.06 9.99 -39.44 -0.39 -2.45 16 8 C -0.08 -0.92 10.04 -39.61 -0.40 -1.32 16 9 C -0.17 -1.80 10.04 -39.56 -0.40 -2.20 16 10 C -0.08 -0.90 10.04 -39.61 -0.40 -1.30 16 11 C -0.21 -2.67 9.04 -39.43 -0.36 -3.03 16 12 C 0.04 0.77 5.27 -4.98 -0.03 0.74 16 13 C 0.44 10.73 7.42 -10.99 -0.08 10.65 16 14 O -0.57 -15.82 13.96 5.55 0.08 -15.74 16 15 N -0.57 -14.55 5.29 -10.96 -0.06 -14.61 16 16 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 17 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 20 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.09 1.92 5.79 -51.93 -0.30 1.62 16 26 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 27 H 0.06 0.59 8.00 -51.93 -0.42 0.18 16 28 H 0.08 0.99 7.94 -51.93 -0.41 0.58 16 29 H 0.06 0.82 6.19 -51.93 -0.32 0.50 16 30 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 31 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 36 H 0.08 1.41 6.57 -51.93 -0.34 1.07 16 37 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 38 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -32.70 329.24 -7.73 -40.43 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.31 Total: 9.93 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.84 Total: -2.60 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.40 Total: -48.56 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.12 Total: -20.45 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.70 -7.73 -40.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065503633.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.916 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds