Wall clock time and date at job start Tue Mar 31 2020 01:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99634 * 2 1 4 4 C 1.52996 * 109.47284 * 199.80195 * 3 2 1 5 5 O 1.42907 * 109.47136 * 64.93725 * 4 3 2 6 6 C 1.35895 * 116.99992 * 180.02562 * 5 4 3 7 7 C 1.38728 * 120.05781 * 180.02562 * 6 5 4 8 8 C 1.38143 * 119.94866 * 179.97438 * 7 6 5 9 9 C 1.38259 * 120.05385 * 0.02562 * 8 7 6 10 10 C 1.38262 * 120.11214 * 359.95242 * 9 8 7 11 11 C 1.38141 * 120.05952 * 0.05018 * 10 9 8 12 12 C 1.46901 * 111.00363 * 123.95329 * 2 1 3 13 13 C 1.50698 * 109.46592 * 66.05110 * 12 2 1 14 14 O 1.21294 * 120.00416 * 359.97438 * 13 12 2 15 15 N 1.34776 * 119.99911 * 180.02562 * 13 12 2 16 16 C 1.37101 * 120.00070 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00195 * 359.97438 * 16 15 13 18 18 C 1.38949 * 119.99704 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00486 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99912 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47204 * 59.99642 * 20 18 16 22 22 H 1.48500 * 109.47287 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46808 * 299.99731 * 20 18 16 24 24 H 1.08999 * 109.47462 * 65.03510 * 1 2 3 25 25 H 1.09000 * 109.46962 * 185.02911 * 1 2 3 26 26 H 1.08999 * 109.47287 * 305.02876 * 1 2 3 27 27 H 1.08999 * 109.46853 * 79.80211 * 3 2 1 28 28 H 1.08997 * 109.47455 * 319.80582 * 3 2 1 29 29 H 1.09004 * 109.47242 * 304.94444 * 4 3 2 30 30 H 1.08997 * 109.47537 * 184.94274 * 4 3 2 31 31 H 1.08002 * 120.02300 * 359.70247 * 7 6 5 32 32 H 1.07998 * 119.97380 * 180.02562 * 8 7 6 33 33 H 1.08006 * 119.94697 * 179.97438 * 9 8 7 34 34 H 1.08007 * 119.97406 * 180.02562 * 10 9 8 35 35 H 1.07997 * 120.03394 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.46931 * 186.04384 * 12 2 1 37 37 H 1.08997 * 109.47268 * 306.05145 * 12 2 1 38 38 H 0.96999 * 119.99769 * 359.97438 * 15 13 12 39 39 H 0.96999 * 120.00253 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4451 1.3614 -0.4887 5 8 3.4849 0.9399 -1.8536 6 6 4.7071 0.8752 -2.4440 7 6 4.8192 0.4742 -3.7673 8 6 6.0628 0.4098 -4.3654 9 6 7.1953 0.7439 -3.6461 10 6 7.0863 1.1443 -2.3272 11 6 5.8450 1.2103 -1.7245 12 6 1.9955 -0.7660 1.1376 13 6 1.6371 -2.2204 0.9727 14 8 1.0048 -2.5831 0.0032 15 7 2.0182 -3.1180 1.9030 16 6 1.6917 -4.4411 1.7533 17 1 1.1287 -4.7641 0.8901 18 6 2.0851 -5.3665 2.7122 19 7 2.7706 -4.9737 3.7623 20 14 1.6408 -7.1694 2.5079 21 1 2.2325 -7.6853 1.2475 22 1 2.1725 -7.9437 3.6582 23 1 0.1636 -7.3124 2.4562 24 1 -0.3634 0.4337 -0.9316 25 1 -0.3633 -1.0237 0.0901 26 1 -0.3634 0.5899 0.8415 27 1 1.9557 1.7759 1.0114 28 1 1.3927 1.9920 -0.6632 29 1 4.0294 0.6725 0.1214 30 1 3.8636 2.3645 -0.4058 31 1 3.9354 0.2085 -4.3282 32 1 6.1505 0.0981 -5.3957 33 1 8.1667 0.6925 -4.1153 34 1 7.9724 1.4052 -1.7674 35 1 5.7604 1.5227 -0.6941 36 1 3.0798 -0.6610 1.1755 37 1 1.5612 -0.3873 2.0628 38 1 2.5235 -2.8278 2.6785 39 1 3.0449 -5.6197 4.4319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065503633.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:56 Heat of formation + Delta-G solvation = -59.361497 kcal Electronic energy + Delta-G solvation = -21091.762991 eV Core-core repulsion = 17806.144631 eV Total energy + Delta-G solvation = -3285.618360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.02145 -40.32833 -38.57058 -37.43193 -35.85935 -33.28078 -32.11295 -31.48425 -30.07593 -29.50242 -26.75307 -25.56544 -23.60984 -23.17463 -21.99157 -20.90497 -19.86644 -19.18384 -17.99283 -17.13457 -17.04179 -16.65417 -16.60497 -16.19608 -15.95919 -15.44511 -15.32592 -15.08667 -14.93201 -14.29937 -14.01055 -13.85866 -13.55203 -13.42274 -13.21336 -13.02606 -12.74889 -12.60999 -12.42871 -12.40842 -12.22440 -12.11965 -11.73192 -11.57199 -11.44051 -10.27702 -9.99903 -9.91155 -9.16154 -9.07756 -8.46401 -5.95028 0.43489 0.55899 1.39272 1.40810 1.51794 2.05792 2.27950 2.35882 2.79359 2.90105 3.20233 3.38397 3.87049 3.98530 4.03618 4.12115 4.20898 4.30888 4.33477 4.38516 4.46775 4.52717 4.54683 4.61322 4.64657 4.72696 4.82317 4.84664 5.12622 5.18420 5.40646 5.42983 5.51936 5.63478 5.87177 5.94865 6.07973 6.21131 6.59626 6.61696 7.13418 7.56649 8.13417 8.70914 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.003948 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.735962 B = 7089.906294 C = 8000.806183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.540 5.540 3 C 0.056 3.944 4 C 0.061 3.939 5 O -0.321 6.321 6 C 0.111 3.889 7 C -0.181 4.181 8 C -0.085 4.085 9 C -0.169 4.169 10 C -0.086 4.086 11 C -0.223 4.223 12 C 0.056 3.944 13 C 0.440 3.560 14 O -0.614 6.614 15 N -0.575 5.575 16 C -0.334 4.334 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.921 5.921 20 Si 0.991 3.009 21 H -0.274 1.274 22 H -0.269 1.269 23 H -0.271 1.271 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.396 0.604 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.421 16.422 -6.886 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.265 5.265 3 C -0.071 4.071 4 C -0.014 4.014 5 O -0.235 6.235 6 C 0.065 3.935 7 C -0.199 4.199 8 C -0.103 4.103 9 C -0.187 4.187 10 C -0.104 4.104 11 C -0.242 4.242 12 C -0.075 4.075 13 C 0.227 3.773 14 O -0.500 6.500 15 N -0.212 5.212 16 C -0.464 4.464 17 H 0.095 0.905 18 C -0.211 4.211 19 N -0.562 5.562 20 Si 0.815 3.185 21 H -0.199 1.199 22 H -0.193 1.193 23 H -0.197 1.197 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.141 0.859 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.229 0.771 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.027 15.815 -7.860 19.007 hybrid contribution -0.263 -0.581 1.277 1.427 sum 6.764 15.234 -6.583 17.921 Atomic orbital electron populations 1.22359 0.86433 1.01918 1.00926 1.61451 1.09004 1.13614 1.42428 1.22312 0.94289 0.88775 1.01735 1.23069 0.98234 1.00097 0.79995 1.86174 1.26629 1.82805 1.27892 1.19428 0.84919 0.95918 0.93212 1.20705 0.99521 1.06330 0.93376 1.21279 0.91115 0.97052 1.00848 1.21411 0.99494 1.02802 0.95010 1.21326 0.97119 0.96618 0.95343 1.21515 0.92785 1.08372 1.01490 1.21781 1.01785 0.90414 0.93502 1.20810 0.83740 0.88880 0.83854 1.90472 1.45126 1.81451 1.32983 1.41924 1.50132 1.07032 1.22147 1.19615 1.34519 0.84151 1.08100 0.90505 1.26005 0.96211 1.04236 0.94638 1.69661 1.38051 1.37253 1.11196 0.85015 0.78664 0.76826 0.77990 1.19906 1.19308 1.19655 0.90872 0.92966 0.94298 0.89533 0.88691 0.92483 0.88857 0.85947 0.83333 0.83444 0.83412 0.84266 0.87966 0.90920 0.77060 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 9.15 127.69 1.17 2.20 16 2 N -0.54 -18.06 4.38 -927.07 -4.06 -22.12 16 3 C 0.06 1.29 5.38 86.30 0.46 1.76 16 4 C 0.06 1.42 4.93 71.98 0.35 1.78 16 5 O -0.32 -9.89 10.08 -92.37 -0.93 -10.82 16 6 C 0.11 3.17 6.69 22.51 0.15 3.32 16 7 C -0.18 -4.91 9.99 22.36 0.22 -4.68 16 8 C -0.09 -1.83 10.04 22.25 0.22 -1.61 16 9 C -0.17 -3.25 10.04 22.28 0.22 -3.02 16 10 C -0.09 -1.72 10.04 22.25 0.22 -1.50 16 11 C -0.22 -5.26 9.04 22.37 0.20 -5.06 16 12 C 0.06 2.00 5.27 85.56 0.45 2.45 16 13 C 0.44 21.66 7.42 87.66 0.65 22.31 16 14 O -0.61 -35.23 13.96 -3.07 -0.04 -35.28 16 15 N -0.57 -30.23 5.29 -306.99 -1.62 -31.85 16 16 C -0.33 -19.42 9.68 84.04 0.81 -18.60 16 17 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 18 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 19 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 20 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.05 2.16 5.79 -2.39 -0.01 2.15 16 26 H 0.04 1.04 8.13 -2.39 -0.02 1.02 16 27 H 0.09 1.50 8.00 -2.39 -0.02 1.48 16 28 H 0.09 2.01 7.94 -2.39 -0.02 1.99 16 29 H 0.06 1.38 6.19 -2.38 -0.01 1.36 16 30 H 0.09 1.55 7.66 -2.39 -0.02 1.53 16 31 H 0.12 3.33 8.06 -2.91 -0.02 3.30 16 32 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 34 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.14 2.73 6.30 -2.91 -0.02 2.71 16 36 H 0.10 3.26 6.57 -2.39 -0.02 3.25 16 37 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 38 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16 39 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -72.91 329.24 1.60 -71.31 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.33 Total: 33.80 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 5.62 Total: -0.79 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -5.40 Total: -103.89 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -0.97 Total: -46.09 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -72.91 1.60 -71.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065503633.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.949 kcal (2) G-P(sol) polarization free energy of solvation -72.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds