Wall clock time and date at job start Tue Mar 31 2020 00:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46498 * 109.47145 * 2 1 4 4 C 1.36913 * 120.00054 * 278.06027 * 3 2 1 5 5 H 1.07997 * 120.00088 * 171.38888 * 4 3 2 6 6 C 1.39020 * 119.99432 * 351.38491 * 4 3 2 7 7 N 1.31379 * 120.00502 * 30.50094 * 6 4 3 8 8 Si 1.86803 * 119.99822 * 210.50093 * 6 4 3 9 9 H 1.48503 * 109.47066 * 94.99771 * 8 6 4 10 10 H 1.48496 * 109.47203 * 214.99932 * 8 6 4 11 11 H 1.48501 * 109.47063 * 335.00034 * 8 6 4 12 12 C 1.34783 * 120.00261 * 98.05127 * 3 2 1 13 13 O 1.21621 * 119.99868 * 184.90265 * 12 3 2 14 14 C 1.47512 * 119.99547 * 4.90684 * 12 3 2 15 15 C 1.40317 * 120.49535 * 132.70817 * 14 12 3 16 16 C 1.36965 * 118.46463 * 179.74861 * 15 14 12 17 17 C 1.39154 * 119.39573 * 0.51116 * 16 15 14 18 18 O 1.35509 * 119.51071 * 179.75179 * 17 16 15 19 19 C 1.42896 * 117.00065 * 179.72772 * 18 17 16 20 20 C 1.53002 * 109.47087 * 269.99800 * 19 18 17 21 21 C 1.52999 * 109.46933 * 149.99864 * 19 18 17 22 22 N 1.32430 * 120.97754 * 359.47549 * 17 16 15 23 23 C 1.31700 * 121.66886 * 0.27406 * 22 17 16 24 24 H 1.08998 * 109.47555 * 70.71270 * 1 2 3 25 25 H 1.09007 * 109.47074 * 190.70841 * 1 2 3 26 26 H 1.09003 * 109.47488 * 310.71077 * 1 2 3 27 27 H 1.08996 * 109.47490 * 240.00207 * 2 1 3 28 28 H 1.09000 * 109.47565 * 119.99784 * 2 1 3 29 29 H 0.97002 * 120.00193 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.77178 * 0.03540 * 15 14 12 31 31 H 1.07994 * 120.29905 * 180.27949 * 16 15 14 32 32 H 1.09003 * 109.47160 * 29.99586 * 19 18 17 33 33 H 1.09005 * 109.47127 * 60.00321 * 20 19 18 34 34 H 1.08997 * 109.46767 * 180.02562 * 20 19 18 35 35 H 1.08996 * 109.47022 * 300.00334 * 20 19 18 36 36 H 1.09005 * 109.46871 * 180.02562 * 21 19 18 37 37 H 1.08998 * 109.47340 * 299.99567 * 21 19 18 38 38 H 1.09001 * 109.47312 * 60.00423 * 21 19 18 39 39 H 1.08003 * 119.75479 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.0897 2.0820 -1.1740 5 1 2.3152 3.1381 -1.1596 6 6 1.8720 1.4341 -2.3845 7 7 1.0578 0.4046 -2.4416 8 14 2.7372 2.0273 -3.9302 9 1 3.9782 1.2382 -4.1366 10 1 1.8385 1.8512 -5.0991 11 1 3.0828 3.4641 -3.7836 12 6 2.3970 1.9621 1.1557 13 8 2.7175 3.1353 1.1702 14 6 2.4229 1.1749 2.4030 15 6 3.5365 1.2273 3.2551 16 6 3.5141 0.4836 4.4050 17 6 2.4022 -0.3040 4.6875 18 8 2.3798 -1.0447 5.8220 19 6 1.2095 -1.8289 6.0618 20 6 0.1965 -1.0032 6.8574 21 6 1.5876 -3.0786 6.8594 22 7 1.3635 -0.3363 3.8667 23 6 1.3401 0.3664 2.7531 24 1 -0.3634 0.3394 -0.9699 25 1 -0.3633 -1.0098 0.1910 26 1 -0.3634 0.6703 0.7790 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.9056 -0.0472 -3.2864 30 1 4.3895 1.8435 3.0123 31 1 4.3533 0.5053 5.0844 32 1 0.7691 -2.1249 5.1096 33 1 -0.0729 -0.1128 6.2891 34 1 -0.6960 -1.6015 7.0406 35 1 0.6369 -0.7071 7.8095 36 1 0.6950 -3.6770 7.0419 37 1 2.3092 -3.6669 6.2926 38 1 2.0279 -2.7826 7.8115 39 1 0.4765 0.3172 2.1063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:47 Heat of formation + Delta-G solvation = -16.403595 kcal Electronic energy + Delta-G solvation = -21931.527354 eV Core-core repulsion = 18647.771788 eV Total energy + Delta-G solvation = -3283.755566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.54732 -38.90837 -37.44812 -35.22279 -33.29190 -32.18775 -32.03663 -30.04902 -29.36706 -27.36049 -25.40374 -23.72802 -23.31490 -22.19442 -21.07828 -19.53715 -18.35761 -17.08993 -16.64769 -16.32272 -15.55946 -14.95444 -14.63948 -14.49531 -14.24591 -14.00214 -13.53356 -13.34324 -13.03683 -12.84904 -12.56482 -12.41926 -12.34810 -12.15129 -11.96110 -11.59156 -11.33622 -11.12931 -10.95539 -10.84442 -10.74066 -10.39190 -10.25473 -9.95077 -9.62344 -9.41487 -8.82718 -8.50885 -8.05100 -7.93720 -6.52391 -3.82425 1.32712 1.56664 3.09821 3.13499 3.22385 3.27658 3.71032 4.01965 4.23397 4.52307 4.73008 4.80641 4.91325 4.96673 5.16527 5.28362 5.31625 5.40151 5.43191 5.55198 5.62314 5.73734 5.82270 5.97035 5.99609 6.08497 6.12318 6.25605 6.44501 6.54761 6.61810 6.70001 6.74033 7.21233 7.39486 7.45182 7.71892 7.99659 8.10133 8.40792 9.07452 9.31493 9.90049 10.45187 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031136 B = 0.004368 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.074847 B = 6408.244042 C = 6889.685998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.108 3.892 3 N -0.425 5.425 4 C -0.310 4.310 5 H 0.110 0.890 6 C 0.038 3.962 7 N -0.849 5.849 8 Si 0.916 3.084 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.473 3.527 13 O -0.592 6.592 14 C -0.175 4.175 15 C -0.009 4.009 16 C -0.196 4.196 17 C 0.314 3.686 18 O -0.305 6.305 19 C 0.080 3.920 20 C -0.168 4.168 21 C -0.149 4.149 22 N -0.541 5.541 23 C 0.146 3.854 24 H 0.105 0.895 25 H 0.039 0.961 26 H 0.029 0.971 27 H 0.103 0.897 28 H 0.039 0.961 29 H 0.270 0.730 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 -7.799 11.969 14.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.015 4.015 3 N -0.141 5.141 4 C -0.437 4.437 5 H 0.128 0.872 6 C -0.166 4.166 7 N -0.488 5.488 8 Si 0.742 3.258 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.262 3.738 13 O -0.478 6.478 14 C -0.181 4.181 15 C -0.035 4.035 16 C -0.216 4.216 17 C 0.135 3.865 18 O -0.213 6.213 19 C 0.023 3.977 20 C -0.225 4.225 21 C -0.206 4.206 22 N -0.264 5.264 23 C -0.010 4.010 24 H 0.123 0.877 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.121 0.879 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.846 -7.935 12.220 14.595 hybrid contribution 0.763 0.514 -1.003 1.361 sum -0.082 -7.421 11.218 13.450 Atomic orbital electron populations 1.22350 0.96299 0.98751 1.03985 1.21836 0.94898 0.83634 1.01167 1.43796 1.52474 1.11795 1.06032 1.19751 1.46262 0.95869 0.81768 0.87249 1.25268 0.95580 0.96346 0.99448 1.70119 1.28830 1.22621 1.27188 0.86080 0.79691 0.79748 0.80312 1.20278 1.21047 1.19148 1.17418 0.86608 0.87181 0.82608 1.90619 1.55810 1.15935 1.85470 1.21106 0.96537 1.01457 0.99032 1.21159 0.97286 0.94127 0.90972 1.20649 0.99162 1.01565 1.00255 1.19918 0.90523 0.90027 0.86063 1.86218 1.41674 1.56715 1.36655 1.22296 0.84793 0.90510 1.00053 1.22205 0.98737 1.01058 1.00509 1.21896 1.02382 0.95885 1.00482 1.67300 1.26996 1.25745 1.06403 1.23390 0.97977 0.88848 0.90787 0.87675 0.94246 0.95213 0.87931 0.94253 0.91945 0.83927 0.84382 0.89137 0.91845 0.91313 0.92245 0.90692 0.91897 0.91848 0.80830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 8.73 37.15 0.32 -2.85 16 2 C 0.11 2.37 4.89 -4.05 -0.02 2.35 16 3 N -0.42 -10.64 2.64 -116.00 -0.31 -10.94 16 4 C -0.31 -8.30 9.35 -14.99 -0.14 -8.44 16 5 H 0.11 3.13 7.34 -52.49 -0.39 2.74 16 6 C 0.04 0.95 5.06 -17.46 -0.09 0.86 16 7 N -0.85 -20.51 8.07 55.50 0.45 -20.06 16 8 Si 0.92 19.68 29.65 -169.99 -5.04 14.65 16 9 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 C 0.47 11.74 7.22 -12.48 -0.09 11.65 16 13 O -0.59 -16.65 16.62 5.26 0.09 -16.56 16 14 C -0.18 -3.60 5.01 -104.83 -0.52 -4.13 16 15 C -0.01 -0.17 9.81 -39.26 -0.39 -0.55 16 16 C -0.20 -3.06 9.97 -39.70 -0.40 -3.46 16 17 C 0.31 5.14 7.46 -16.95 -0.13 5.01 16 18 O -0.30 -4.44 9.75 -18.22 -0.18 -4.62 16 19 C 0.08 0.96 3.10 -26.73 -0.08 0.88 16 20 C -0.17 -1.82 9.53 37.16 0.35 -1.46 16 21 C -0.15 -1.36 9.56 37.16 0.36 -1.00 16 22 N -0.54 -9.39 8.62 -12.93 -0.11 -9.50 16 23 C 0.15 2.74 8.64 -17.10 -0.15 2.59 16 24 H 0.10 2.40 5.91 -51.93 -0.31 2.09 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.03 0.59 6.29 -51.93 -0.33 0.26 16 27 H 0.10 2.41 5.89 -51.93 -0.31 2.11 16 28 H 0.04 0.80 5.20 -51.93 -0.27 0.53 16 29 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 30 H 0.14 2.38 8.06 -52.49 -0.42 1.95 16 31 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.09 1.19 6.97 -51.93 -0.36 0.83 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.18 3.24 3.93 -52.48 -0.21 3.03 16 LS Contribution 317.92 15.07 4.79 4.79 Total: -1.00 -28.91 317.92 -6.38 -35.29 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.10 Total: 5.50 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.97 Total: 1.45 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.03 Total: -40.51 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.09 Total: -21.17 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.04 Total: 14.65 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.91 -6.38 -35.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.888 kcal (2) G-P(sol) polarization free energy of solvation -28.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds