Wall clock time and date at job start Tue Mar 31 2020 00:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46498 * 109.47145 * 2 1 4 4 C 1.36913 * 120.00054 * 278.06027 * 3 2 1 5 5 H 1.07997 * 120.00088 * 171.38888 * 4 3 2 6 6 C 1.39020 * 119.99432 * 351.38491 * 4 3 2 7 7 N 1.31379 * 120.00502 * 30.50094 * 6 4 3 8 8 Si 1.86803 * 119.99822 * 210.50093 * 6 4 3 9 9 H 1.48503 * 109.47066 * 94.99771 * 8 6 4 10 10 H 1.48496 * 109.47203 * 214.99932 * 8 6 4 11 11 H 1.48501 * 109.47063 * 335.00034 * 8 6 4 12 12 C 1.34783 * 120.00261 * 98.05127 * 3 2 1 13 13 O 1.21621 * 119.99868 * 184.90265 * 12 3 2 14 14 C 1.47512 * 119.99547 * 4.90684 * 12 3 2 15 15 C 1.40317 * 120.49535 * 132.70817 * 14 12 3 16 16 C 1.36965 * 118.46463 * 179.74861 * 15 14 12 17 17 C 1.39154 * 119.39573 * 0.51116 * 16 15 14 18 18 O 1.35509 * 119.51071 * 179.75179 * 17 16 15 19 19 C 1.42896 * 117.00065 * 179.72772 * 18 17 16 20 20 C 1.53002 * 109.47087 * 269.99800 * 19 18 17 21 21 C 1.52999 * 109.46933 * 149.99864 * 19 18 17 22 22 N 1.32430 * 120.97754 * 359.47549 * 17 16 15 23 23 C 1.31700 * 121.66886 * 0.27406 * 22 17 16 24 24 H 1.08998 * 109.47555 * 70.71270 * 1 2 3 25 25 H 1.09007 * 109.47074 * 190.70841 * 1 2 3 26 26 H 1.09003 * 109.47488 * 310.71077 * 1 2 3 27 27 H 1.08996 * 109.47490 * 240.00207 * 2 1 3 28 28 H 1.09000 * 109.47565 * 119.99784 * 2 1 3 29 29 H 0.97002 * 120.00193 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.77178 * 0.03540 * 15 14 12 31 31 H 1.07994 * 120.29905 * 180.27949 * 16 15 14 32 32 H 1.09003 * 109.47160 * 29.99586 * 19 18 17 33 33 H 1.09005 * 109.47127 * 60.00321 * 20 19 18 34 34 H 1.08997 * 109.46767 * 180.02562 * 20 19 18 35 35 H 1.08996 * 109.47022 * 300.00334 * 20 19 18 36 36 H 1.09005 * 109.46871 * 180.02562 * 21 19 18 37 37 H 1.08998 * 109.47340 * 299.99567 * 21 19 18 38 38 H 1.09001 * 109.47312 * 60.00423 * 21 19 18 39 39 H 1.08003 * 119.75479 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.0897 2.0820 -1.1740 5 1 2.3152 3.1381 -1.1596 6 6 1.8720 1.4341 -2.3845 7 7 1.0578 0.4046 -2.4416 8 14 2.7372 2.0273 -3.9302 9 1 3.9782 1.2382 -4.1366 10 1 1.8385 1.8512 -5.0991 11 1 3.0828 3.4641 -3.7836 12 6 2.3970 1.9621 1.1557 13 8 2.7175 3.1353 1.1702 14 6 2.4229 1.1749 2.4030 15 6 3.5365 1.2273 3.2551 16 6 3.5141 0.4836 4.4050 17 6 2.4022 -0.3040 4.6875 18 8 2.3798 -1.0447 5.8220 19 6 1.2095 -1.8289 6.0618 20 6 0.1965 -1.0032 6.8574 21 6 1.5876 -3.0786 6.8594 22 7 1.3635 -0.3363 3.8667 23 6 1.3401 0.3664 2.7531 24 1 -0.3634 0.3394 -0.9699 25 1 -0.3633 -1.0098 0.1910 26 1 -0.3634 0.6703 0.7790 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.9056 -0.0472 -3.2864 30 1 4.3895 1.8435 3.0123 31 1 4.3533 0.5053 5.0844 32 1 0.7691 -2.1249 5.1096 33 1 -0.0729 -0.1128 6.2891 34 1 -0.6960 -1.6015 7.0406 35 1 0.6369 -0.7071 7.8095 36 1 0.6950 -3.6770 7.0419 37 1 2.3092 -3.6669 6.2926 38 1 2.0279 -2.7826 7.8115 39 1 0.4765 0.3172 2.1063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068240648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:45 Heat of formation + Delta-G solvation = -34.421102 kcal Electronic energy + Delta-G solvation = -21932.308652 eV Core-core repulsion = 18647.771788 eV Total energy + Delta-G solvation = -3284.536864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.93880 -40.48821 -38.87121 -37.14933 -34.38594 -33.82910 -33.58090 -31.68018 -30.97723 -28.14561 -27.22721 -25.06157 -24.84194 -23.93932 -22.16202 -21.23719 -19.55865 -18.91773 -18.38041 -17.77961 -16.80287 -16.70525 -16.03662 -16.00509 -15.81845 -15.41721 -14.92564 -14.74390 -14.57700 -14.24585 -14.02739 -13.86209 -13.36498 -13.26238 -13.11830 -13.11100 -12.85128 -12.80544 -12.62693 -12.14059 -12.12184 -11.89970 -11.81790 -11.60479 -11.02129 -10.88478 -10.72493 -10.32173 -9.87826 -9.45249 -8.43213 -5.83201 -0.11052 0.18487 1.35907 1.44622 1.55043 1.96201 2.00020 2.24819 2.70177 2.89443 3.07113 3.22914 3.79857 3.87895 3.94892 4.06233 4.09145 4.14715 4.32015 4.37288 4.59671 4.70768 4.74810 4.81461 4.84953 4.86320 4.88961 4.96516 5.07417 5.19660 5.23864 5.29911 5.35987 5.40226 5.48991 5.94162 6.01915 6.22267 6.48608 6.71158 7.12580 7.40277 7.99135 8.52770 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031136 B = 0.004368 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.074847 B = 6408.244042 C = 6889.685998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.113 3.887 3 N -0.432 5.432 4 C -0.358 4.358 5 H 0.077 0.923 6 C 0.018 3.982 7 N -0.848 5.848 8 Si 0.977 3.023 9 H -0.270 1.270 10 H -0.270 1.270 11 H -0.279 1.279 12 C 0.463 3.537 13 O -0.640 6.640 14 C -0.202 4.202 15 C -0.010 4.010 16 C -0.183 4.183 17 C 0.319 3.681 18 O -0.303 6.303 19 C 0.069 3.931 20 C -0.164 4.164 21 C -0.143 4.143 22 N -0.541 5.541 23 C 0.151 3.849 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.279 0.721 30 H 0.149 0.851 31 H 0.174 0.826 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.354 -9.965 13.269 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.010 4.010 3 N -0.147 5.147 4 C -0.485 4.485 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.484 5.484 8 Si 0.801 3.199 9 H -0.196 1.196 10 H -0.195 1.195 11 H -0.204 1.204 12 C 0.253 3.747 13 O -0.530 6.530 14 C -0.208 4.208 15 C -0.036 4.036 16 C -0.203 4.203 17 C 0.139 3.861 18 O -0.211 6.211 19 C 0.013 3.987 20 C -0.221 4.221 21 C -0.200 4.200 22 N -0.265 5.265 23 C -0.005 4.005 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.166 0.834 31 H 0.191 0.809 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.843 -10.160 13.528 16.940 hybrid contribution 0.705 1.085 -1.289 1.826 sum -0.138 -9.076 12.239 15.237 Atomic orbital electron populations 1.22195 0.95047 1.00475 1.02596 1.21843 0.95839 0.82114 1.01159 1.43970 1.52349 1.12646 1.05747 1.19562 1.50052 0.95273 0.83582 0.90547 1.25870 0.95115 0.96579 1.01184 1.70169 1.27622 1.22342 1.28298 0.85190 0.78854 0.78574 0.77310 1.19572 1.19450 1.20383 1.18061 0.85745 0.87042 0.83814 1.90558 1.57831 1.18130 1.86518 1.20828 0.98743 1.03065 0.98162 1.21287 0.96714 0.94386 0.91183 1.20927 0.99883 0.99920 0.99564 1.20210 0.90203 0.89543 0.86128 1.86245 1.42998 1.56411 1.35400 1.22637 0.84285 0.91490 1.00249 1.22190 0.99409 1.00310 1.00227 1.21901 1.03508 0.94448 1.00152 1.67352 1.27567 1.25539 1.06010 1.23235 0.97333 0.88672 0.91303 0.90109 0.91221 0.95109 0.89485 0.92496 0.91052 0.83351 0.80887 0.90345 0.94114 0.89059 0.91372 0.88422 0.92054 0.91057 0.81041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 8.73 71.98 0.63 -5.26 16 2 C 0.11 5.01 4.89 86.38 0.42 5.43 16 3 N -0.43 -22.44 2.64 -639.17 -1.69 -24.13 16 4 C -0.36 -20.06 9.35 84.09 0.79 -19.27 16 5 H 0.08 4.69 7.34 -2.91 -0.02 4.67 16 6 C 0.02 0.91 5.06 84.95 0.43 1.33 16 7 N -0.85 -40.83 8.07 21.68 0.17 -40.65 16 8 Si 0.98 40.69 29.65 68.60 2.03 42.72 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 10 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 12 C 0.46 23.98 7.22 86.69 0.63 24.61 16 13 O -0.64 -38.06 16.62 -4.10 -0.07 -38.13 16 14 C -0.20 -8.40 5.01 -20.00 -0.10 -8.50 16 15 C -0.01 -0.34 9.81 22.48 0.22 -0.12 16 16 C -0.18 -5.30 9.97 22.19 0.22 -5.08 16 17 C 0.32 9.76 7.46 84.82 0.63 10.39 16 18 O -0.30 -8.00 9.75 -88.12 -0.86 -8.86 16 19 C 0.07 1.48 3.10 30.59 0.09 1.58 16 20 C -0.16 -3.14 9.53 71.98 0.69 -2.46 16 21 C -0.14 -2.12 9.56 71.98 0.69 -1.43 16 22 N -0.54 -18.04 8.62 -307.70 -2.65 -20.69 16 23 C 0.15 5.60 8.64 85.04 0.73 6.34 16 24 H 0.08 3.70 5.91 -2.39 -0.01 3.68 16 25 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 26 H 0.03 1.22 6.29 -2.39 -0.01 1.20 16 27 H 0.09 4.11 5.89 -2.39 -0.01 4.10 16 28 H 0.06 2.30 5.20 -2.39 -0.01 2.29 16 29 H 0.28 12.41 8.31 -92.71 -0.77 11.64 16 30 H 0.15 4.93 8.06 -2.91 -0.02 4.91 16 31 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.08 1.89 6.97 -2.39 -0.02 1.88 16 33 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.17 6.38 3.93 -2.91 -0.01 6.37 16 Total: -1.00 -64.63 317.92 4.08 -60.55 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 1.06 Total: 21.62 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.07 Total: 7.56 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -4.16 Total: -85.47 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -0.93 Total: -46.99 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -64.63 4.08 -60.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.129 kcal (2) G-P(sol) polarization free energy of solvation -64.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds