Wall clock time and date at job start Tue Mar 31 2020 01:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35898 * 117.00095 * 2 1 4 4 C 1.38755 * 120.05369 * 359.95763 * 3 2 1 5 5 C 1.38121 * 119.94263 * 180.02562 * 4 3 2 6 6 C 1.38278 * 120.05641 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.11435 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05275 * 359.95455 * 7 6 5 9 9 C 1.50697 * 120.02616 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.46980 * 259.99745 * 9 8 7 11 11 C 1.34781 * 120.00132 * 180.02562 * 10 9 8 12 12 O 1.21278 * 119.99859 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99949 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.46921 * 180.02562 * 13 11 10 15 15 C 1.46500 * 119.99898 * 269.99686 * 14 13 11 16 16 C 1.36933 * 119.99819 * 90.00205 * 14 13 11 17 17 H 1.07997 * 120.00825 * 22.34948 * 16 14 13 18 18 C 1.38820 * 119.99598 * 202.35577 * 16 14 13 19 19 N 1.31613 * 120.00251 * 11.42384 * 18 16 14 20 20 Si 1.86797 * 119.99836 * 191.42672 * 18 16 14 21 21 H 1.48506 * 109.47418 * 89.99750 * 20 18 16 22 22 H 1.48498 * 109.47160 * 209.99573 * 20 18 16 23 23 H 1.48497 * 109.47062 * 329.99886 * 20 18 16 24 24 H 1.08994 * 109.46758 * 60.00197 * 1 2 3 25 25 H 1.09007 * 109.46924 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47020 * 299.99859 * 1 2 3 27 27 H 1.08004 * 120.02617 * 0.04066 * 4 3 2 28 28 H 1.08004 * 119.96825 * 180.29280 * 5 4 3 29 29 H 1.08006 * 119.94751 * 180.02562 * 6 5 4 30 30 H 1.07999 * 119.97427 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.47347 * 19.99738 * 9 8 7 32 32 H 1.09003 * 109.47378 * 139.99823 * 9 8 7 33 33 H 0.97004 * 120.00314 * 0.02562 * 10 9 8 34 34 H 1.08997 * 109.47002 * 299.99945 * 13 11 10 35 35 H 1.08997 * 109.46871 * 59.99828 * 13 11 10 36 36 H 1.08997 * 109.46768 * 94.12587 * 15 14 13 37 37 H 1.08995 * 109.47224 * 214.12511 * 15 14 13 38 38 H 1.09000 * 109.47396 * 334.12669 * 15 14 13 39 39 H 0.97002 * 120.00288 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9209 3.6047 -0.0014 6 6 3.3019 3.6757 -0.0016 7 6 4.0560 2.5171 -0.0018 8 6 3.4311 1.2848 -0.0008 9 6 4.2538 0.0222 -0.0005 10 7 4.3188 -0.5187 -1.3604 11 6 5.0057 -1.6527 -1.6026 12 8 5.5697 -2.2256 -0.6945 13 6 5.0731 -2.2087 -3.0016 14 7 5.8717 -3.4369 -3.0011 15 6 7.3185 -3.3700 -3.2211 16 6 5.2657 -4.6475 -2.7950 17 1 4.2096 -4.7628 -2.9891 18 6 6.0090 -5.7265 -2.3363 19 7 7.2318 -5.5398 -1.8868 20 14 5.2735 -7.4434 -2.3570 21 1 5.5835 -8.0992 -3.6529 22 1 5.8514 -8.2429 -1.2470 23 1 3.8010 -7.3532 -2.1877 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2128 2.3203 -0.0009 28 1 1.3340 4.5113 0.0027 29 1 3.7923 4.6380 -0.0016 30 1 5.1344 2.5752 -0.0024 31 1 5.2614 0.2451 0.3504 32 1 3.7928 -0.7117 0.6607 33 1 3.8674 -0.0607 -2.0867 34 1 4.0655 -2.4311 -3.3531 35 1 5.5347 -1.4750 -3.6623 36 1 7.8306 -3.3295 -2.2598 37 1 7.6439 -4.2540 -3.7693 38 1 7.5574 -2.4765 -3.7979 39 1 7.7513 -6.2938 -1.5667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:07 Heat of formation + Delta-G solvation = -14.995955 kcal Electronic energy + Delta-G solvation = -21360.372560 eV Core-core repulsion = 18076.678034 eV Total energy + Delta-G solvation = -3283.694526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.43013 -38.54380 -37.52834 -35.15532 -34.17004 -31.49895 -30.98771 -30.25599 -27.75823 -27.25122 -25.77344 -25.18430 -22.29368 -21.83265 -21.14490 -19.52422 -18.18670 -16.71902 -16.51983 -16.33119 -15.93542 -15.49994 -15.17191 -14.60805 -14.48021 -14.42065 -13.82887 -13.35852 -13.14244 -12.93683 -12.82493 -12.57062 -12.15005 -12.10007 -11.63433 -11.51083 -11.29060 -11.00898 -10.91444 -10.77643 -10.55475 -10.25390 -9.91773 -9.79348 -9.24527 -8.83835 -8.43301 -8.32508 -8.26075 -6.64949 -5.59182 -3.05354 1.08372 1.26012 3.14990 3.44811 3.50025 3.51625 3.54188 3.75653 4.14375 4.54817 4.60941 4.63860 4.86112 4.89680 4.97184 5.14083 5.19134 5.33813 5.45829 5.56845 5.67259 5.69938 5.74312 5.96436 6.12835 6.22635 6.26830 6.29808 6.40700 6.42197 6.61471 6.83317 7.13670 7.24541 7.48463 7.86122 7.95105 8.28859 8.51407 9.27949 9.35790 9.95656 10.43352 11.45678 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.003929 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.232857 B = 7123.920365 C = 7804.694234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.304 6.304 3 C 0.142 3.858 4 C -0.213 4.213 5 C -0.080 4.080 6 C -0.161 4.161 7 C -0.065 4.065 8 C -0.130 4.130 9 C 0.170 3.830 10 N -0.741 5.741 11 C 0.470 3.530 12 O -0.511 6.511 13 C 0.133 3.867 14 N -0.573 5.573 15 C 0.164 3.836 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.008 3.992 19 N -0.897 5.897 20 Si 0.906 3.094 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.390 0.610 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.048 0.952 38 H -0.005 1.005 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 19.440 1.750 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.217 6.217 3 C 0.096 3.904 4 C -0.232 4.232 5 C -0.098 4.098 6 C -0.180 4.180 7 C -0.084 4.084 8 C -0.131 4.131 9 C 0.046 3.954 10 N -0.398 5.398 11 C 0.254 3.746 12 O -0.383 6.383 13 C 0.001 3.999 14 N -0.293 5.293 15 C 0.020 3.980 16 C -0.387 4.387 17 H 0.087 0.913 18 C -0.191 4.191 19 N -0.541 5.541 20 Si 0.736 3.264 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 H 0.073 0.927 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.222 0.778 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.014 0.986 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.739 18.580 2.476 22.117 hybrid contribution -0.960 -0.394 0.050 1.039 sum -12.699 18.186 2.525 22.324 Atomic orbital electron populations 1.23078 0.78518 1.04205 1.01001 1.86220 1.21145 1.26323 1.87998 1.18940 0.91805 0.84446 0.95190 1.21229 0.99992 0.92359 1.09636 1.20933 0.94715 0.96861 0.97295 1.21043 0.93889 0.98371 1.04655 1.20999 1.00182 0.90863 0.96341 1.19437 0.90674 0.96021 1.07014 1.19849 0.97933 0.91024 0.86603 1.46581 1.56472 1.28009 1.08732 1.23589 0.77431 0.78791 0.94810 1.90695 1.43567 1.57675 1.46318 1.20996 0.97775 0.90199 0.90969 1.43862 1.04181 1.00362 1.80925 1.20846 0.82948 0.95915 0.98306 1.19168 0.94453 0.86196 1.38850 0.91309 1.25078 0.96959 0.98815 0.98278 1.70099 1.10180 1.29401 1.44404 0.86241 0.78496 0.84576 0.77084 1.21488 1.21742 1.20538 0.92683 0.88064 0.92838 0.85507 0.85950 0.85865 0.85111 0.91612 0.91173 0.77776 0.91039 0.91654 0.94858 0.93323 0.98607 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -3.95 9.73 -19.42 -0.19 -4.14 16 3 C 0.14 1.74 6.66 -39.22 -0.26 1.48 16 4 C -0.21 -2.09 9.04 -39.43 -0.36 -2.45 16 5 C -0.08 -0.70 10.04 -39.61 -0.40 -1.10 16 6 C -0.16 -1.47 10.04 -39.56 -0.40 -1.87 16 7 C -0.07 -0.70 9.67 -39.60 -0.38 -1.08 16 8 C -0.13 -1.67 5.26 -104.48 -0.55 -2.22 16 9 C 0.17 2.71 5.46 -5.20 -0.03 2.68 16 10 N -0.74 -12.51 5.55 -61.47 -0.34 -12.85 16 11 C 0.47 10.35 7.90 -10.98 -0.09 10.27 16 12 O -0.51 -14.19 16.43 5.56 0.09 -14.10 16 13 C 0.13 2.85 6.19 -5.19 -0.03 2.82 16 14 N -0.57 -15.41 2.41 -182.51 -0.44 -15.85 16 15 C 0.16 4.34 9.01 59.85 0.54 4.88 16 16 C -0.26 -7.50 9.67 -15.06 -0.15 -7.65 16 17 H 0.07 1.94 7.84 -52.49 -0.41 1.53 16 18 C 0.01 0.24 5.13 -17.43 -0.09 0.15 16 19 N -0.90 -27.95 10.59 55.49 0.59 -27.36 16 20 Si 0.91 22.94 29.57 -169.99 -5.03 17.92 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 25 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 27 H 0.13 0.97 6.30 -52.48 -0.33 0.64 16 28 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 29 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 30 H 0.13 1.25 8.04 -52.49 -0.42 0.83 16 31 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 32 H 0.07 1.27 7.86 -51.93 -0.41 0.86 16 33 H 0.39 5.47 8.46 -40.82 -0.35 5.12 16 34 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 35 H 0.07 1.19 7.87 -51.93 -0.41 0.78 16 36 H 0.03 0.98 7.42 -51.93 -0.39 0.60 16 37 H 0.05 1.34 7.18 -51.93 -0.37 0.97 16 38 H 0.00 -0.10 7.85 -51.93 -0.41 -0.51 16 39 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -36.78 332.23 -7.03 -43.81 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.52 Total: 0.44 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -1.20 Total: 7.12 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.19 Total: -56.05 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.10 Total: -18.24 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.03 Total: 17.92 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.78 -7.03 -43.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.814 kcal (2) G-P(sol) polarization free energy of solvation -36.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds