Wall clock time and date at job start Tue Mar 31 2020 01:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35898 * 117.00095 * 2 1 4 4 C 1.38755 * 120.05369 * 359.95763 * 3 2 1 5 5 C 1.38121 * 119.94263 * 180.02562 * 4 3 2 6 6 C 1.38278 * 120.05641 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.11435 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05275 * 359.95455 * 7 6 5 9 9 C 1.50697 * 120.02616 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.46980 * 259.99745 * 9 8 7 11 11 C 1.34781 * 120.00132 * 180.02562 * 10 9 8 12 12 O 1.21278 * 119.99859 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99949 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.46921 * 180.02562 * 13 11 10 15 15 C 1.46500 * 119.99898 * 269.99686 * 14 13 11 16 16 C 1.36933 * 119.99819 * 90.00205 * 14 13 11 17 17 H 1.07997 * 120.00825 * 22.34948 * 16 14 13 18 18 C 1.38820 * 119.99598 * 202.35577 * 16 14 13 19 19 N 1.31613 * 120.00251 * 11.42384 * 18 16 14 20 20 Si 1.86797 * 119.99836 * 191.42672 * 18 16 14 21 21 H 1.48506 * 109.47418 * 89.99750 * 20 18 16 22 22 H 1.48498 * 109.47160 * 209.99573 * 20 18 16 23 23 H 1.48497 * 109.47062 * 329.99886 * 20 18 16 24 24 H 1.08994 * 109.46758 * 60.00197 * 1 2 3 25 25 H 1.09007 * 109.46924 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47020 * 299.99859 * 1 2 3 27 27 H 1.08004 * 120.02617 * 0.04066 * 4 3 2 28 28 H 1.08004 * 119.96825 * 180.29280 * 5 4 3 29 29 H 1.08006 * 119.94751 * 180.02562 * 6 5 4 30 30 H 1.07999 * 119.97427 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.47347 * 19.99738 * 9 8 7 32 32 H 1.09003 * 109.47378 * 139.99823 * 9 8 7 33 33 H 0.97004 * 120.00314 * 0.02562 * 10 9 8 34 34 H 1.08997 * 109.47002 * 299.99945 * 13 11 10 35 35 H 1.08997 * 109.46871 * 59.99828 * 13 11 10 36 36 H 1.08997 * 109.46768 * 94.12587 * 15 14 13 37 37 H 1.08995 * 109.47224 * 214.12511 * 15 14 13 38 38 H 1.09000 * 109.47396 * 334.12669 * 15 14 13 39 39 H 0.97002 * 120.00288 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9209 3.6047 -0.0014 6 6 3.3019 3.6757 -0.0016 7 6 4.0560 2.5171 -0.0018 8 6 3.4311 1.2848 -0.0008 9 6 4.2538 0.0222 -0.0005 10 7 4.3188 -0.5187 -1.3604 11 6 5.0057 -1.6527 -1.6026 12 8 5.5697 -2.2256 -0.6945 13 6 5.0731 -2.2087 -3.0016 14 7 5.8717 -3.4369 -3.0011 15 6 7.3185 -3.3700 -3.2211 16 6 5.2657 -4.6475 -2.7950 17 1 4.2096 -4.7628 -2.9891 18 6 6.0090 -5.7265 -2.3363 19 7 7.2318 -5.5398 -1.8868 20 14 5.2735 -7.4434 -2.3570 21 1 5.5835 -8.0992 -3.6529 22 1 5.8514 -8.2429 -1.2470 23 1 3.8010 -7.3532 -2.1877 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2128 2.3203 -0.0009 28 1 1.3340 4.5113 0.0027 29 1 3.7923 4.6380 -0.0016 30 1 5.1344 2.5752 -0.0024 31 1 5.2614 0.2451 0.3504 32 1 3.7928 -0.7117 0.6607 33 1 3.8674 -0.0607 -2.0867 34 1 4.0655 -2.4311 -3.3531 35 1 5.5347 -1.4750 -3.6623 36 1 7.8306 -3.3295 -2.2598 37 1 7.6439 -4.2540 -3.7693 38 1 7.5574 -2.4765 -3.7979 39 1 7.7513 -6.2938 -1.5667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:06 Heat of formation + Delta-G solvation = -41.215801 kcal Electronic energy + Delta-G solvation = -21361.509538 eV Core-core repulsion = 18076.678034 eV Total energy + Delta-G solvation = -3284.831504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.31371 -40.23759 -38.37637 -37.08996 -35.71445 -33.33827 -32.41886 -31.03910 -29.24610 -28.18251 -27.87849 -26.58560 -23.56953 -23.06455 -22.34450 -21.23925 -19.04428 -18.78456 -17.97490 -17.29409 -17.16838 -16.68678 -16.49376 -16.14016 -16.03002 -15.33262 -15.29640 -14.95647 -14.72358 -14.54054 -13.90781 -13.75197 -13.54940 -13.44662 -13.02770 -12.84256 -12.79150 -12.50928 -12.36535 -12.20049 -12.04213 -12.00215 -11.86652 -11.72256 -10.90837 -10.55510 -9.92963 -9.86632 -9.15748 -8.78034 -7.80227 -5.29748 0.27279 0.48164 1.44518 1.47642 1.56037 1.99633 2.40370 2.41260 2.54084 2.92330 3.37637 3.67206 3.72836 3.86248 4.08027 4.25953 4.31797 4.35370 4.39131 4.46246 4.58901 4.64487 4.66976 4.73048 4.73525 4.82108 4.87370 5.03592 5.31399 5.37463 5.49069 5.58246 5.61734 5.65166 5.75833 5.87226 6.30237 6.46457 6.81524 7.14998 7.60686 7.86943 8.27611 9.23811 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.003929 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.232857 B = 7123.920365 C = 7804.694234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.127 3.873 4 C -0.213 4.213 5 C -0.072 4.072 6 C -0.159 4.159 7 C -0.070 4.070 8 C -0.153 4.153 9 C 0.177 3.823 10 N -0.716 5.716 11 C 0.472 3.528 12 O -0.578 6.578 13 C 0.129 3.871 14 N -0.594 5.594 15 C 0.179 3.821 16 C -0.266 4.266 17 H 0.076 0.924 18 C -0.055 4.055 19 N -0.935 5.935 20 Si 0.974 3.026 21 H -0.277 1.277 22 H -0.299 1.299 23 H -0.268 1.268 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.137 0.863 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.408 0.592 34 H 0.093 0.907 35 H 0.106 0.894 36 H -0.009 1.009 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.867 22.057 0.740 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.081 3.919 4 C -0.231 4.231 5 C -0.090 4.090 6 C -0.177 4.177 7 C -0.088 4.088 8 C -0.154 4.154 9 C 0.053 3.947 10 N -0.371 5.371 11 C 0.257 3.743 12 O -0.456 6.456 13 C -0.002 4.002 14 N -0.314 5.314 15 C 0.034 3.966 16 C -0.396 4.396 17 H 0.094 0.906 18 C -0.250 4.250 19 N -0.581 5.581 20 Si 0.801 3.199 21 H -0.203 1.203 22 H -0.226 1.226 23 H -0.193 1.193 24 H 0.090 0.910 25 H 0.122 0.878 26 H 0.087 0.913 27 H 0.167 0.833 28 H 0.173 0.827 29 H 0.168 0.832 30 H 0.155 0.845 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.243 0.757 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.009 0.991 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.247 21.282 1.427 25.650 hybrid contribution -0.325 -0.982 0.370 1.099 sum -14.573 20.300 1.797 25.053 Atomic orbital electron populations 1.23310 0.76580 1.05026 1.02550 1.86168 1.23393 1.27344 1.88310 1.19125 0.91725 0.85138 0.95902 1.21515 1.01113 0.91780 1.08732 1.21383 0.94872 0.97664 0.95056 1.21378 0.94261 0.98728 1.03342 1.21143 1.00804 0.90734 0.96147 1.19219 0.90923 0.95008 1.10260 1.19709 0.97932 0.92053 0.84974 1.46202 1.54513 1.26351 1.10062 1.23447 0.77023 0.79461 0.94335 1.90683 1.46738 1.60023 1.48107 1.21243 0.98595 0.89284 0.91047 1.44042 1.04446 1.01637 1.81280 1.20559 0.82980 0.96710 0.96319 1.19578 0.94786 0.87544 1.37736 0.90648 1.25944 0.97528 1.02897 0.98642 1.70315 1.11685 1.29985 1.46152 0.85179 0.78075 0.79626 0.76994 1.20278 1.22611 1.19311 0.90990 0.87783 0.91310 0.83259 0.82661 0.83192 0.84525 0.92449 0.94154 0.75652 0.88871 0.87613 0.99097 0.95536 0.94434 0.94573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.42 16 2 O -0.34 -8.59 9.73 -92.40 -0.90 -9.49 16 3 C 0.13 2.93 6.66 22.51 0.15 3.08 16 4 C -0.21 -3.50 9.04 22.37 0.20 -3.29 16 5 C -0.07 -0.96 10.04 22.25 0.22 -0.73 16 6 C -0.16 -2.34 10.04 22.28 0.22 -2.12 16 7 C -0.07 -1.37 9.67 22.25 0.22 -1.16 16 8 C -0.15 -3.81 5.26 -19.77 -0.10 -3.92 16 9 C 0.18 5.80 5.46 85.63 0.47 6.27 16 10 N -0.72 -23.94 5.55 -466.79 -2.59 -26.53 16 11 C 0.47 20.92 7.90 87.66 0.69 21.61 16 12 O -0.58 -33.39 16.43 -3.02 -0.05 -33.44 16 13 C 0.13 5.34 6.19 85.63 0.53 5.87 16 14 N -0.59 -31.97 2.41 -731.32 -1.76 -33.74 16 15 C 0.18 9.63 9.01 127.77 1.15 10.78 16 16 C -0.27 -15.66 9.67 84.04 0.81 -14.85 16 17 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 18 C -0.06 -3.33 5.13 84.86 0.44 -2.89 16 19 N -0.94 -60.52 10.59 21.65 0.23 -60.29 16 20 Si 0.97 48.05 29.57 68.60 2.03 50.08 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 24 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 25 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 27 H 0.15 1.70 6.30 -2.91 -0.02 1.68 16 28 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 29 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.14 2.42 8.04 -2.91 -0.02 2.40 16 31 H 0.06 1.95 8.00 -2.39 -0.02 1.93 16 32 H 0.04 1.55 7.86 -2.39 -0.02 1.54 16 33 H 0.41 10.79 8.46 -92.71 -0.78 10.01 16 34 H 0.09 3.45 8.03 -2.39 -0.02 3.44 16 35 H 0.11 3.51 7.87 -2.39 -0.02 3.49 16 36 H -0.01 -0.58 7.42 -2.39 -0.02 -0.60 16 37 H 0.03 1.49 7.18 -2.39 -0.02 1.47 16 38 H 0.04 1.65 7.85 -2.39 -0.02 1.63 16 39 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -83.87 332.23 3.33 -80.53 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.27 Total: 12.81 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 6.11 Total: 20.06 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -4.13 Total: -120.55 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.95 Total: -42.93 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -83.87 3.33 -80.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.315 kcal (2) G-P(sol) polarization free energy of solvation -83.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds