Wall clock time and date at job start Tue Mar 31 2020 01:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42893 * 109.47073 * 2 1 4 4 C 1.42900 * 113.99878 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47342 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99604 * 4.95849 * 5 4 3 7 7 N 1.34772 * 120.00402 * 184.96247 * 5 4 3 8 8 C 1.46509 * 119.99787 * 4.95935 * 7 5 4 9 9 C 1.50702 * 109.47103 * 277.10824 * 8 7 5 10 10 H 1.07999 * 119.99766 * 114.44589 * 9 8 7 11 11 C 1.37870 * 120.00018 * 294.44314 * 9 8 7 12 12 N 1.31510 * 120.00623 * 4.53767 * 11 9 8 13 13 Si 1.86804 * 119.99732 * 184.54021 * 11 9 8 14 14 H 1.48502 * 109.47308 * 60.00011 * 13 11 9 15 15 H 1.48500 * 109.46983 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47122 * 299.99693 * 13 11 9 17 17 C 1.46497 * 120.00389 * 184.96515 * 7 5 4 18 18 C 1.50700 * 109.47104 * 275.57022 * 17 7 5 19 19 C 1.38673 * 120.41718 * 269.72186 * 18 17 7 20 20 C 1.38631 * 118.42198 * 179.78218 * 19 18 17 21 21 C 1.38228 * 119.15917 * 0.51223 * 20 19 18 22 22 N 1.31859 * 120.76133 * 359.72637 * 21 20 19 23 23 C 1.31882 * 121.72503 * 359.97438 * 22 21 20 24 24 H 1.08994 * 109.47130 * 299.99981 * 1 2 3 25 25 H 1.09002 * 109.46537 * 60.00437 * 1 2 3 26 26 H 1.08999 * 109.46925 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47130 * 240.00019 * 2 1 3 28 28 H 1.09003 * 109.46896 * 120.00449 * 2 1 3 29 29 H 1.09000 * 109.47241 * 60.00668 * 4 3 2 30 30 H 1.09006 * 109.47563 * 300.00298 * 4 3 2 31 31 H 1.08998 * 109.46459 * 157.10900 * 8 7 5 32 32 H 1.08992 * 109.46792 * 37.11008 * 8 7 5 33 33 H 0.96996 * 120.00547 * 175.00272 * 12 11 9 34 34 H 1.09007 * 109.46861 * 35.56700 * 17 7 5 35 35 H 1.08996 * 109.47559 * 155.56496 * 17 7 5 36 36 H 1.08006 * 120.78954 * 0.02562 * 19 18 17 37 37 H 1.07994 * 120.41978 * 180.21524 * 20 19 18 38 38 H 1.07994 * 119.61646 * 179.75013 * 21 20 19 39 39 H 1.08010 * 119.61373 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8195 2.9161 0.0012 6 8 2.9648 3.7718 0.0919 7 7 5.1168 3.2674 -0.0992 8 6 6.1389 2.2408 -0.3179 9 6 6.5130 1.6153 1.0011 10 1 6.2896 0.5754 1.1883 11 6 7.1405 2.3707 1.9689 12 7 7.3325 3.6575 1.7770 13 14 7.7181 1.5662 3.5528 14 1 8.7018 0.4997 3.2363 15 1 8.3576 2.5867 4.4216 16 1 6.5547 0.9727 4.2594 17 6 5.5050 4.6757 0.0106 18 6 5.3571 5.3437 -1.3322 19 6 6.4186 5.3697 -2.2241 20 6 6.2356 5.9913 -3.4497 21 6 5.0132 6.5697 -3.7356 22 7 4.0272 6.5300 -2.8610 23 6 4.1638 5.9424 -1.6882 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.8340 0.9765 -0.8892 30 1 3.8334 0.9766 0.8908 31 1 7.0212 2.6966 -0.7672 32 1 5.7463 1.4737 -0.9854 33 1 7.7078 4.2029 2.4858 34 1 4.8628 5.1740 0.7369 35 1 6.5427 4.7423 0.3372 36 1 7.3643 4.9131 -1.9715 37 1 7.0395 6.0273 -4.1699 38 1 4.8638 7.0594 -4.6865 39 1 3.3336 5.9304 -0.9974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070266585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:16 Heat of formation + Delta-G solvation = -46.645263 kcal Electronic energy + Delta-G solvation = -22032.121799 eV Core-core repulsion = 18747.054856 eV Total energy + Delta-G solvation = -3285.066943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77841 -38.74980 -37.10385 -35.02666 -32.81859 -31.89203 -31.39667 -30.95605 -27.90147 -27.20182 -24.82848 -23.25519 -22.75988 -22.54022 -21.48252 -18.56880 -16.88489 -16.71768 -16.27722 -16.01477 -15.76384 -15.26137 -15.05587 -14.73034 -14.59160 -14.03113 -13.54543 -13.10082 -13.01554 -12.58647 -12.55443 -12.30761 -12.21320 -12.02835 -11.96133 -11.23207 -11.12234 -11.06116 -10.99558 -10.87262 -10.64599 -9.99155 -9.78047 -9.37612 -9.23189 -9.01464 -8.97199 -8.72266 -8.37222 -7.36654 -6.32395 -4.49955 1.57600 1.75915 3.13400 3.20467 3.22220 3.61772 3.68396 4.16885 4.28523 4.67914 4.91264 5.03873 5.20488 5.24860 5.37315 5.48024 5.51729 5.54678 5.63292 5.72929 5.74506 5.80692 5.97577 6.04140 6.10630 6.23395 6.24229 6.45998 6.53672 6.55685 6.89700 6.97571 7.16830 7.23755 7.48440 7.65517 7.80093 7.89830 8.41454 8.44473 8.78253 9.25068 9.28400 10.66707 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010017 B = 0.008061 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.715136 B = 3472.852580 C = 5790.384203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.371 6.371 4 C 0.052 3.948 5 C 0.512 3.488 6 O -0.561 6.561 7 N -0.566 5.566 8 C 0.226 3.774 9 C -0.544 4.544 10 H 0.062 0.938 11 C 0.079 3.921 12 N -0.877 5.877 13 Si 0.900 3.100 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.276 1.276 17 C 0.152 3.848 18 C -0.138 4.138 19 C -0.064 4.064 20 C -0.184 4.184 21 C 0.080 3.920 22 N -0.495 5.495 23 C 0.115 3.885 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.026 0.974 33 H 0.269 0.731 34 H 0.064 0.936 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.056 -2.189 -5.696 6.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.289 6.289 4 C -0.027 4.027 5 C 0.299 3.701 6 O -0.441 6.441 7 N -0.296 5.296 8 C 0.107 3.893 9 C -0.583 4.583 10 H 0.080 0.920 11 C -0.125 4.125 12 N -0.514 5.514 13 Si 0.727 3.273 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.201 1.201 17 C 0.029 3.971 18 C -0.142 4.142 19 C -0.091 4.091 20 C -0.204 4.204 21 C -0.077 4.077 22 N -0.204 5.204 23 C -0.042 4.042 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.246 -1.075 -5.796 6.729 hybrid contribution 1.416 -1.133 1.091 2.116 sum -1.830 -2.207 -4.705 5.510 Atomic orbital electron populations 1.21710 0.94030 1.01650 1.03179 1.22440 0.95391 0.84450 0.99860 1.87966 1.20264 1.25257 1.95435 1.22303 0.81559 0.96398 1.02450 1.20018 0.83177 0.89656 0.77213 1.90565 1.49980 1.51907 1.51694 1.48582 1.05585 1.07379 1.68093 1.19433 0.87692 0.86453 0.95733 1.21484 1.38471 0.97264 1.01045 0.92014 1.24998 0.93927 0.94790 0.98834 1.69447 1.43501 1.05080 1.33342 0.86517 0.79143 0.79195 0.82398 1.19942 1.21013 1.20113 1.20874 1.06446 0.80467 0.89334 1.21883 0.94185 0.98306 0.99794 1.21592 0.99146 0.95642 0.92673 1.22049 0.99044 1.01219 0.98079 1.22615 0.89423 0.97395 0.98312 1.67689 1.32406 1.17047 1.03214 1.22995 0.96736 0.91851 0.92658 0.91856 0.91971 0.91471 0.93751 0.93491 0.91598 0.89552 0.93722 0.95555 0.92059 0.91742 0.83657 0.84865 0.85555 0.83715 0.82348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 37.16 0.38 -1.43 16 2 C 0.06 0.81 6.66 37.16 0.25 1.05 16 3 O -0.37 -7.25 9.88 -55.09 -0.54 -7.80 16 4 C 0.05 1.03 5.14 36.01 0.19 1.21 16 5 C 0.51 11.74 7.62 -10.99 -0.08 11.65 16 6 O -0.56 -14.17 14.73 -14.30 -0.21 -14.38 16 7 N -0.57 -12.54 2.36 -176.43 -0.42 -12.96 16 8 C 0.23 4.92 5.17 -5.19 -0.03 4.89 16 9 C -0.54 -12.83 8.61 -34.44 -0.30 -13.13 16 10 H 0.06 1.43 7.82 -52.49 -0.41 1.01 16 11 C 0.08 1.91 5.43 -17.82 -0.10 1.81 16 12 N -0.88 -21.30 9.66 55.43 0.54 -20.76 16 13 Si 0.90 19.18 29.54 -169.99 -5.02 14.16 16 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 C 0.15 3.27 4.66 -5.20 -0.02 3.25 16 18 C -0.14 -2.69 5.43 -104.48 -0.57 -3.26 16 19 C -0.06 -1.09 9.86 -39.28 -0.39 -1.48 16 20 C -0.18 -2.72 10.11 -39.44 -0.40 -3.12 16 21 C 0.08 1.25 11.18 -17.54 -0.20 1.05 16 22 N -0.49 -9.32 10.36 -13.25 -0.14 -9.46 16 23 C 0.11 2.29 10.37 -17.55 -0.18 2.10 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.17 7.05 -51.93 -0.37 0.81 16 30 H 0.09 1.70 7.63 -51.93 -0.40 1.30 16 31 H 0.04 0.99 8.01 -51.93 -0.42 0.57 16 32 H 0.03 0.52 6.66 -51.93 -0.35 0.18 16 33 H 0.27 6.36 8.32 -40.82 -0.34 6.02 16 34 H 0.06 1.47 7.62 -51.93 -0.40 1.08 16 35 H 0.15 3.27 5.19 -51.93 -0.27 3.00 16 36 H 0.13 2.14 8.06 -52.48 -0.42 1.71 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.15 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.16 3.34 7.06 -52.48 -0.37 2.97 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -28.20 328.64 -7.78 -35.98 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.49 Total: 5.66 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.45 Total: 4.61 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.02 Total: -43.18 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.76 Total: -22.18 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.20 -7.78 -35.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070266585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.670 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds