Wall clock time and date at job start Tue Mar 31 2020 01:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42893 * 109.47073 * 2 1 4 4 C 1.42900 * 113.99878 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47342 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99604 * 4.95849 * 5 4 3 7 7 N 1.34772 * 120.00402 * 184.96247 * 5 4 3 8 8 C 1.46509 * 119.99787 * 4.95935 * 7 5 4 9 9 C 1.50702 * 109.47103 * 277.10824 * 8 7 5 10 10 H 1.07999 * 119.99766 * 114.44589 * 9 8 7 11 11 C 1.37870 * 120.00018 * 294.44314 * 9 8 7 12 12 N 1.31510 * 120.00623 * 4.53767 * 11 9 8 13 13 Si 1.86804 * 119.99732 * 184.54021 * 11 9 8 14 14 H 1.48502 * 109.47308 * 60.00011 * 13 11 9 15 15 H 1.48500 * 109.46983 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47122 * 299.99693 * 13 11 9 17 17 C 1.46497 * 120.00389 * 184.96515 * 7 5 4 18 18 C 1.50700 * 109.47104 * 275.57022 * 17 7 5 19 19 C 1.38673 * 120.41718 * 269.72186 * 18 17 7 20 20 C 1.38631 * 118.42198 * 179.78218 * 19 18 17 21 21 C 1.38228 * 119.15917 * 0.51223 * 20 19 18 22 22 N 1.31859 * 120.76133 * 359.72637 * 21 20 19 23 23 C 1.31882 * 121.72503 * 359.97438 * 22 21 20 24 24 H 1.08994 * 109.47130 * 299.99981 * 1 2 3 25 25 H 1.09002 * 109.46537 * 60.00437 * 1 2 3 26 26 H 1.08999 * 109.46925 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47130 * 240.00019 * 2 1 3 28 28 H 1.09003 * 109.46896 * 120.00449 * 2 1 3 29 29 H 1.09000 * 109.47241 * 60.00668 * 4 3 2 30 30 H 1.09006 * 109.47563 * 300.00298 * 4 3 2 31 31 H 1.08998 * 109.46459 * 157.10900 * 8 7 5 32 32 H 1.08992 * 109.46792 * 37.11008 * 8 7 5 33 33 H 0.96996 * 120.00547 * 175.00272 * 12 11 9 34 34 H 1.09007 * 109.46861 * 35.56700 * 17 7 5 35 35 H 1.08996 * 109.47559 * 155.56496 * 17 7 5 36 36 H 1.08006 * 120.78954 * 0.02562 * 19 18 17 37 37 H 1.07994 * 120.41978 * 180.21524 * 20 19 18 38 38 H 1.07994 * 119.61646 * 179.75013 * 21 20 19 39 39 H 1.08010 * 119.61373 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8195 2.9161 0.0012 6 8 2.9648 3.7718 0.0919 7 7 5.1168 3.2674 -0.0992 8 6 6.1389 2.2408 -0.3179 9 6 6.5130 1.6153 1.0011 10 1 6.2896 0.5754 1.1883 11 6 7.1405 2.3707 1.9689 12 7 7.3325 3.6575 1.7770 13 14 7.7181 1.5662 3.5528 14 1 8.7018 0.4997 3.2363 15 1 8.3576 2.5867 4.4216 16 1 6.5547 0.9727 4.2594 17 6 5.5050 4.6757 0.0106 18 6 5.3571 5.3437 -1.3322 19 6 6.4186 5.3697 -2.2241 20 6 6.2356 5.9913 -3.4497 21 6 5.0132 6.5697 -3.7356 22 7 4.0272 6.5300 -2.8610 23 6 4.1638 5.9424 -1.6882 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.8340 0.9765 -0.8892 30 1 3.8334 0.9766 0.8908 31 1 7.0212 2.6966 -0.7672 32 1 5.7463 1.4737 -0.9854 33 1 7.7078 4.2029 2.4858 34 1 4.8628 5.1740 0.7369 35 1 6.5427 4.7423 0.3372 36 1 7.3643 4.9131 -1.9715 37 1 7.0395 6.0273 -4.1699 38 1 4.8638 7.0594 -4.6865 39 1 3.3336 5.9304 -0.9974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070266585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:15 Heat of formation + Delta-G solvation = -62.266008 kcal Electronic energy + Delta-G solvation = -22032.799165 eV Core-core repulsion = 18747.054856 eV Total energy + Delta-G solvation = -3285.744309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25967 -40.35531 -38.55450 -36.81400 -34.49442 -33.48141 -32.71069 -32.19586 -29.54824 -28.84320 -26.39379 -24.91802 -24.27052 -23.65318 -22.93266 -20.28985 -18.62237 -18.16095 -17.70094 -17.49317 -17.21726 -16.81204 -16.72100 -16.37783 -16.10163 -15.43648 -15.03350 -14.51193 -14.48058 -14.21656 -13.94602 -13.75140 -13.67741 -13.63116 -13.21846 -12.81146 -12.77256 -12.64176 -12.37591 -12.26860 -12.12018 -11.73860 -11.54771 -10.87082 -10.66575 -10.60263 -10.49420 -10.36466 -9.84673 -9.13262 -8.14456 -6.36591 0.21345 0.39533 1.43940 1.47725 1.52414 1.85750 2.17981 2.40299 2.90597 3.05052 3.35842 3.60007 3.94523 4.05195 4.07978 4.14722 4.19075 4.23251 4.25013 4.37725 4.47024 4.49824 4.64209 4.77959 4.83095 4.89475 4.93464 5.03037 5.16469 5.25573 5.26275 5.36209 5.51412 5.81000 5.87145 5.99928 6.08158 6.22584 6.60972 7.01014 7.07434 7.39841 7.51995 8.82460 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010017 B = 0.008061 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.715136 B = 3472.852580 C = 5790.384203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 O -0.401 6.401 4 C 0.063 3.937 5 C 0.497 3.503 6 O -0.595 6.595 7 N -0.565 5.565 8 C 0.229 3.771 9 C -0.555 4.555 10 H 0.066 0.934 11 C 0.039 3.961 12 N -0.892 5.892 13 Si 0.952 3.048 14 H -0.266 1.266 15 H -0.289 1.289 16 H -0.281 1.281 17 C 0.162 3.838 18 C -0.154 4.154 19 C -0.068 4.068 20 C -0.165 4.165 21 C 0.081 3.919 22 N -0.516 5.516 23 C 0.097 3.903 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.267 0.733 34 H 0.035 0.965 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.172 0.828 38 H 0.187 0.813 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 -3.300 -7.413 8.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.320 6.320 4 C -0.016 4.016 5 C 0.285 3.715 6 O -0.478 6.478 7 N -0.295 5.295 8 C 0.110 3.890 9 C -0.594 4.594 10 H 0.084 0.916 11 C -0.164 4.164 12 N -0.530 5.530 13 Si 0.778 3.222 14 H -0.191 1.191 15 H -0.214 1.214 16 H -0.207 1.207 17 C 0.038 3.962 18 C -0.157 4.157 19 C -0.094 4.094 20 C -0.184 4.184 21 C -0.076 4.076 22 N -0.225 5.225 23 C -0.060 4.060 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.190 0.810 38 H 0.204 0.796 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.357 -2.208 -7.512 8.176 hybrid contribution 1.144 -0.767 1.539 2.065 sum -1.214 -2.975 -5.973 6.782 Atomic orbital electron populations 1.21749 0.92438 1.03613 1.02439 1.22802 0.96736 0.82381 1.01250 1.87941 1.19857 1.28580 1.95665 1.22153 0.82256 0.93931 1.03285 1.20693 0.83001 0.91042 0.76715 1.90542 1.50799 1.53184 1.53236 1.48622 1.05626 1.07740 1.67467 1.19425 0.87465 0.86613 0.95516 1.21744 1.38325 0.97552 1.01739 0.91615 1.25614 0.94322 0.95272 1.01216 1.69564 1.43938 1.05690 1.33774 0.85710 0.78501 0.78395 0.79574 1.19075 1.21430 1.20668 1.20626 1.04816 0.80425 0.90306 1.21619 0.95198 0.99478 0.99396 1.21770 0.98582 0.95846 0.93209 1.22481 0.99816 0.98605 0.97485 1.23361 0.88909 0.96461 0.98866 1.67670 1.34128 1.17502 1.03181 1.22618 0.96368 0.93634 0.93338 0.92812 0.92517 0.88105 0.91857 0.92474 0.89448 0.89628 0.94240 0.93533 0.92337 0.94689 0.84572 0.83937 0.81018 0.79618 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 10.28 71.98 0.74 -2.58 16 2 C 0.04 1.22 6.66 71.98 0.48 1.70 16 3 O -0.40 -15.64 9.88 -129.99 -1.28 -16.92 16 4 C 0.06 2.46 5.14 71.24 0.37 2.83 16 5 C 0.50 23.34 7.62 87.66 0.67 24.01 16 6 O -0.59 -31.49 14.73 15.96 0.24 -31.25 16 7 N -0.56 -25.53 2.36 -830.50 -1.96 -27.49 16 8 C 0.23 9.85 5.17 85.63 0.44 10.30 16 9 C -0.56 -25.86 8.61 25.60 0.22 -25.64 16 10 H 0.07 2.96 7.82 -2.91 -0.02 2.93 16 11 C 0.04 1.85 5.43 84.65 0.46 2.31 16 12 N -0.89 -43.86 9.66 21.44 0.21 -43.65 16 13 Si 0.95 39.12 29.54 68.60 2.03 41.15 16 14 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 15 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 17 C 0.16 7.25 4.66 85.63 0.40 7.65 16 18 C -0.15 -6.09 5.43 -19.78 -0.11 -6.20 16 19 C -0.07 -2.20 9.86 22.47 0.22 -1.98 16 20 C -0.16 -4.28 10.11 22.36 0.23 -4.06 16 21 C 0.08 2.31 11.18 84.69 0.95 3.25 16 22 N -0.52 -19.16 10.36 -195.84 -2.03 -21.19 16 23 C 0.10 3.99 10.37 84.67 0.88 4.87 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 2.99 7.05 -2.39 -0.02 2.97 16 30 H 0.09 3.34 7.63 -2.38 -0.02 3.32 16 31 H 0.04 1.73 8.01 -2.39 -0.02 1.71 16 32 H 0.05 1.79 6.66 -2.39 -0.02 1.77 16 33 H 0.27 12.81 8.32 -92.71 -0.77 12.03 16 34 H 0.03 1.72 7.62 -2.38 -0.02 1.70 16 35 H 0.14 6.35 5.19 -2.39 -0.01 6.33 16 36 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 37 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.19 3.67 8.06 -2.91 -0.02 3.64 16 39 H 0.13 6.02 7.06 -2.91 -0.02 6.00 16 Total: -1.00 -62.37 328.64 4.18 -58.20 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 1.04 Total: 24.70 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 5.94 Total: 16.46 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -3.78 Total: -92.33 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -1.05 Total: -48.17 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -62.37 4.18 -58.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070266585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.069 kcal (2) G-P(sol) polarization free energy of solvation -62.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds