Wall clock time and date at job start Tue Mar 31 2020 01:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00270 * 2 1 4 4 C 1.38817 * 120.01785 * 0.02562 * 3 2 1 5 5 C 1.38164 * 120.08120 * 179.97438 * 4 3 2 6 6 C 1.38169 * 120.12648 * 359.74592 * 5 4 3 7 7 C 1.38887 * 120.03786 * 0.50868 * 6 5 4 8 8 N 1.39925 * 120.03815 * 179.76638 * 7 6 5 9 9 C 1.34779 * 119.99651 * 214.89050 * 8 7 6 10 10 O 1.21287 * 119.99992 * 355.67075 * 9 8 7 11 11 C 1.50701 * 119.99780 * 175.67571 * 9 8 7 12 12 C 1.53006 * 109.47174 * 179.97438 * 11 9 8 13 13 N 1.46495 * 109.47362 * 179.97438 * 12 11 9 14 14 C 1.46504 * 119.99532 * 270.00089 * 13 12 11 15 15 C 1.36934 * 119.99952 * 89.99678 * 13 12 11 16 16 H 1.07998 * 120.00084 * 24.89690 * 15 13 12 17 17 C 1.38816 * 119.99681 * 204.89461 * 15 13 12 18 18 N 1.31612 * 120.00155 * 5.59836 * 17 15 13 19 19 Si 1.86802 * 119.99846 * 185.60316 * 17 15 13 20 20 H 1.48504 * 109.47048 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47360 * 119.99621 * 19 17 15 22 22 H 1.48497 * 109.46897 * 240.00107 * 19 17 15 23 23 C 1.38579 * 120.02137 * 179.97438 * 3 2 1 24 24 H 1.09003 * 109.46861 * 60.00034 * 1 2 3 25 25 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47554 * 300.00899 * 1 2 3 27 27 H 1.07995 * 119.95515 * 359.96204 * 4 3 2 28 28 H 1.08003 * 119.93529 * 180.02562 * 5 4 3 29 29 H 1.07995 * 119.97951 * 180.27284 * 6 5 4 30 30 H 0.96997 * 120.00202 * 34.89243 * 8 7 6 31 31 H 1.08998 * 109.47660 * 59.99583 * 11 9 8 32 32 H 1.08996 * 109.47206 * 299.99275 * 11 9 8 33 33 H 1.09005 * 109.46719 * 300.00061 * 12 11 9 34 34 H 1.09008 * 109.46900 * 59.99399 * 12 11 9 35 35 H 1.08998 * 109.47175 * 95.01905 * 14 13 12 36 36 H 1.09009 * 109.46421 * 215.01170 * 14 13 12 37 37 H 1.08998 * 109.47506 * 335.00925 * 14 13 12 38 38 H 0.97008 * 120.00051 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.06210 * 0.04904 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2904 2.3753 0.0005 5 6 1.9163 3.6070 0.0011 6 6 3.2959 3.6838 0.0064 7 6 4.0569 2.5221 0.0005 8 7 5.4540 2.5999 0.0009 9 6 6.1800 1.6848 -0.6714 10 8 5.6275 0.7497 -1.2110 11 6 7.6785 1.8235 -0.7524 12 6 8.2549 0.6625 -1.5654 13 7 9.7114 0.7976 -1.6448 14 6 10.3184 1.5487 -2.7465 15 6 10.5055 0.2220 -0.6892 16 1 10.1476 -0.6310 -0.1318 17 6 11.7705 0.7349 -0.4369 18 7 12.1646 1.8387 -1.0357 19 14 12.9137 -0.1417 0.7523 20 1 12.2377 -1.3503 1.2888 21 1 14.1546 -0.5424 0.0418 22 1 13.2571 0.7709 1.8723 23 6 3.4299 1.2838 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2119 2.3183 0.0003 28 1 1.3261 4.5115 0.0019 29 1 3.7827 4.6479 0.0112 30 1 5.8999 3.3123 0.4851 31 1 8.0998 1.8072 0.2527 32 1 7.9303 2.7669 -1.2368 33 1 8.0030 -0.2808 -1.0807 34 1 7.8335 0.6784 -2.5706 35 1 10.5015 2.5752 -2.4290 36 1 11.2623 1.0817 -3.0279 37 1 9.6433 1.5479 -3.6022 38 1 13.0485 2.1973 -0.8591 39 1 4.0193 0.3789 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072596837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:17 Heat of formation + Delta-G solvation = -20.752671 kcal Electronic energy + Delta-G solvation = -20910.782545 eV Core-core repulsion = 17626.838389 eV Total energy + Delta-G solvation = -3283.944156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.61040 -39.45369 -37.41832 -35.62236 -34.38089 -31.99159 -30.79623 -29.99832 -28.77114 -27.37780 -25.86961 -24.44071 -22.94825 -21.99391 -20.67979 -19.83135 -18.52384 -17.05501 -16.63102 -16.27594 -16.00194 -15.86706 -15.76727 -15.11348 -14.71922 -13.95066 -13.82990 -13.58686 -13.38216 -12.92061 -12.79884 -12.50937 -12.30909 -12.07084 -11.89943 -11.41403 -11.20721 -11.16056 -10.86789 -10.79360 -10.51452 -10.20375 -10.10420 -9.94317 -9.78571 -9.47787 -8.55716 -8.44288 -8.10842 -6.75334 -5.72799 -3.21643 1.20536 1.37185 2.86061 2.97286 3.35564 3.39422 3.44984 3.47345 3.74724 4.49595 4.66723 4.88972 4.93161 4.93908 5.08640 5.10285 5.25288 5.28108 5.42538 5.47537 5.74185 5.82984 5.84813 6.03605 6.15940 6.20710 6.34901 6.37395 6.42159 6.72873 6.80324 6.84025 6.98795 7.32466 7.42782 7.51223 7.76316 7.82873 8.34105 8.42902 9.25149 9.87022 10.36981 11.31557 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030740 B = 0.003182 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.635696 B = 8796.131552 C = 9053.517888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.143 3.857 4 C -0.231 4.231 5 C -0.064 4.064 6 C -0.187 4.187 7 C 0.193 3.807 8 N -0.682 5.682 9 C 0.516 3.484 10 O -0.521 6.521 11 C -0.157 4.157 12 C 0.169 3.831 13 N -0.603 5.603 14 C 0.162 3.838 15 C -0.255 4.255 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.910 5.910 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.290 1.290 23 C -0.157 4.157 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.413 0.587 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.029 0.971 36 H 0.045 0.955 37 H -0.004 1.004 38 H 0.252 0.748 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.518 4.509 3.025 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.097 3.903 4 C -0.251 4.251 5 C -0.082 4.082 6 C -0.208 4.208 7 C 0.097 3.903 8 N -0.328 5.328 9 C 0.305 3.695 10 O -0.395 6.395 11 C -0.200 4.200 12 C 0.040 3.960 13 N -0.325 5.325 14 C 0.018 3.982 15 C -0.384 4.384 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C -0.178 4.178 24 H 0.073 0.927 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.249 0.751 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.015 0.985 38 H 0.062 0.938 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.534 3.680 2.583 21.998 hybrid contribution 0.638 0.374 0.979 1.227 sum -20.896 4.055 3.562 21.581 Atomic orbital electron populations 1.23039 0.78593 1.03828 1.01203 1.86105 1.21152 1.26946 1.88584 1.18813 0.91869 0.84106 0.95491 1.21150 0.99827 0.92366 1.11754 1.20650 0.93759 0.96939 0.96892 1.20836 0.93980 0.97078 1.08885 1.17499 0.83342 0.92902 0.96544 1.43937 1.03944 1.32340 1.52564 1.21735 0.90885 0.80766 0.76081 1.90668 1.73051 1.30886 1.44921 1.22640 0.87223 1.04928 1.05255 1.20611 0.84287 0.94354 0.96735 1.44032 0.99417 1.62138 1.26890 1.20855 0.94906 0.96279 0.86207 1.19313 0.96889 1.08359 1.13868 0.91281 1.25128 0.99061 0.96329 0.99054 1.70063 1.19353 1.20899 1.45196 0.86165 0.80809 0.78876 0.80631 1.20252 1.21632 1.21673 1.20505 0.91589 0.98709 1.06991 0.92706 0.88331 0.92752 0.85685 0.85594 0.85574 0.75075 0.88473 0.89311 0.93001 0.93674 0.95239 0.93599 0.98524 0.93801 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.04 10.49 -19.42 -0.20 -4.24 16 3 C 0.14 1.92 6.68 -39.24 -0.26 1.66 16 4 C -0.23 -2.49 9.04 -39.39 -0.36 -2.84 16 5 C -0.06 -0.64 10.03 -39.63 -0.40 -1.03 16 6 C -0.19 -2.08 9.96 -39.37 -0.39 -2.47 16 7 C 0.19 2.65 6.29 -83.72 -0.53 2.12 16 8 N -0.68 -9.15 5.34 -9.88 -0.05 -9.21 16 9 C 0.52 8.65 7.67 -10.98 -0.08 8.57 16 10 O -0.52 -10.32 13.43 5.55 0.07 -10.24 16 11 C -0.16 -2.82 6.03 -27.88 -0.17 -2.99 16 12 C 0.17 3.63 5.00 -4.04 -0.02 3.61 16 13 N -0.60 -15.32 2.92 -181.11 -0.53 -15.85 16 14 C 0.16 4.03 8.99 59.85 0.54 4.57 16 15 C -0.25 -7.00 9.67 -15.06 -0.15 -7.14 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C 0.00 0.06 5.24 -17.43 -0.09 -0.03 16 18 N -0.91 -26.13 10.45 55.49 0.58 -25.55 16 19 Si 0.91 21.72 29.56 -169.99 -5.02 16.70 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C -0.16 -2.41 8.63 -39.25 -0.34 -2.75 16 24 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 27 H 0.13 1.01 6.29 -52.49 -0.33 0.68 16 28 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.41 4.26 8.82 -40.82 -0.36 3.90 16 31 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.05 1.15 8.00 -51.93 -0.42 0.73 16 34 H 0.04 0.95 7.82 -51.92 -0.41 0.54 16 35 H 0.03 0.77 7.35 -51.93 -0.38 0.39 16 36 H 0.05 1.23 7.26 -51.92 -0.38 0.85 16 37 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 38 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.15 2.61 6.24 -52.49 -0.33 2.28 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -32.63 328.16 -6.92 -39.55 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.46 Total: 1.43 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.25 Total: 2.48 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.00 Total: -50.61 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.13 Total: -14.49 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.63 -6.92 -39.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072596837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.798 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds