Wall clock time and date at job start Tue Mar 31 2020 01:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00270 * 2 1 4 4 C 1.38817 * 120.01785 * 0.02562 * 3 2 1 5 5 C 1.38164 * 120.08120 * 179.97438 * 4 3 2 6 6 C 1.38169 * 120.12648 * 359.74592 * 5 4 3 7 7 C 1.38887 * 120.03786 * 0.50868 * 6 5 4 8 8 N 1.39925 * 120.03815 * 179.76638 * 7 6 5 9 9 C 1.34779 * 119.99651 * 214.89050 * 8 7 6 10 10 O 1.21287 * 119.99992 * 355.67075 * 9 8 7 11 11 C 1.50701 * 119.99780 * 175.67571 * 9 8 7 12 12 C 1.53006 * 109.47174 * 179.97438 * 11 9 8 13 13 N 1.46495 * 109.47362 * 179.97438 * 12 11 9 14 14 C 1.46504 * 119.99532 * 270.00089 * 13 12 11 15 15 C 1.36934 * 119.99952 * 89.99678 * 13 12 11 16 16 H 1.07998 * 120.00084 * 24.89690 * 15 13 12 17 17 C 1.38816 * 119.99681 * 204.89461 * 15 13 12 18 18 N 1.31612 * 120.00155 * 5.59836 * 17 15 13 19 19 Si 1.86802 * 119.99846 * 185.60316 * 17 15 13 20 20 H 1.48504 * 109.47048 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47360 * 119.99621 * 19 17 15 22 22 H 1.48497 * 109.46897 * 240.00107 * 19 17 15 23 23 C 1.38579 * 120.02137 * 179.97438 * 3 2 1 24 24 H 1.09003 * 109.46861 * 60.00034 * 1 2 3 25 25 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47554 * 300.00899 * 1 2 3 27 27 H 1.07995 * 119.95515 * 359.96204 * 4 3 2 28 28 H 1.08003 * 119.93529 * 180.02562 * 5 4 3 29 29 H 1.07995 * 119.97951 * 180.27284 * 6 5 4 30 30 H 0.96997 * 120.00202 * 34.89243 * 8 7 6 31 31 H 1.08998 * 109.47660 * 59.99583 * 11 9 8 32 32 H 1.08996 * 109.47206 * 299.99275 * 11 9 8 33 33 H 1.09005 * 109.46719 * 300.00061 * 12 11 9 34 34 H 1.09008 * 109.46900 * 59.99399 * 12 11 9 35 35 H 1.08998 * 109.47175 * 95.01905 * 14 13 12 36 36 H 1.09009 * 109.46421 * 215.01170 * 14 13 12 37 37 H 1.08998 * 109.47506 * 335.00925 * 14 13 12 38 38 H 0.97008 * 120.00051 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.06210 * 0.04904 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2904 2.3753 0.0005 5 6 1.9163 3.6070 0.0011 6 6 3.2959 3.6838 0.0064 7 6 4.0569 2.5221 0.0005 8 7 5.4540 2.5999 0.0009 9 6 6.1800 1.6848 -0.6714 10 8 5.6275 0.7497 -1.2110 11 6 7.6785 1.8235 -0.7524 12 6 8.2549 0.6625 -1.5654 13 7 9.7114 0.7976 -1.6448 14 6 10.3184 1.5487 -2.7465 15 6 10.5055 0.2220 -0.6892 16 1 10.1476 -0.6310 -0.1318 17 6 11.7705 0.7349 -0.4369 18 7 12.1646 1.8387 -1.0357 19 14 12.9137 -0.1417 0.7523 20 1 12.2377 -1.3503 1.2888 21 1 14.1546 -0.5424 0.0418 22 1 13.2571 0.7709 1.8723 23 6 3.4299 1.2838 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2119 2.3183 0.0003 28 1 1.3261 4.5115 0.0019 29 1 3.7827 4.6479 0.0112 30 1 5.8999 3.3123 0.4851 31 1 8.0998 1.8072 0.2527 32 1 7.9303 2.7669 -1.2368 33 1 8.0030 -0.2808 -1.0807 34 1 7.8335 0.6784 -2.5706 35 1 10.5015 2.5752 -2.4290 36 1 11.2623 1.0817 -3.0279 37 1 9.6433 1.5479 -3.6022 38 1 13.0485 2.1973 -0.8591 39 1 4.0193 0.3789 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072596837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:16 Heat of formation + Delta-G solvation = -42.089628 kcal Electronic energy + Delta-G solvation = -20911.707784 eV Core-core repulsion = 17626.838389 eV Total energy + Delta-G solvation = -3284.869396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.69521 -40.53178 -38.45626 -37.50006 -35.53006 -33.87149 -31.92579 -31.36295 -29.99579 -28.08586 -27.92291 -26.10174 -24.05290 -23.12833 -22.22117 -21.23697 -19.48154 -18.83780 -18.13037 -17.25328 -17.07698 -16.79156 -16.69344 -16.58077 -16.43235 -15.53881 -15.24139 -14.93621 -14.49728 -14.45306 -14.09341 -13.92062 -13.55687 -13.24117 -13.03142 -12.79178 -12.72416 -12.64593 -12.43880 -12.23099 -12.03809 -12.02920 -11.95683 -11.63094 -11.22813 -10.83770 -10.65212 -9.44857 -9.04463 -8.80180 -7.83000 -5.34816 0.24109 0.46391 1.47034 1.48813 1.56847 1.59180 1.95701 2.44453 2.52236 2.81602 3.31560 3.59889 3.89793 4.04208 4.12717 4.24579 4.25713 4.30247 4.38082 4.40853 4.47028 4.59158 4.71212 4.75451 4.83318 4.87747 5.05264 5.23654 5.29418 5.33806 5.36160 5.38123 5.48979 5.64472 5.73910 5.87375 6.33557 6.39637 6.47797 7.10639 7.16188 7.84597 8.29985 9.19955 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030740 B = 0.003182 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.635696 B = 8796.131552 C = 9053.517888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.128 3.872 4 C -0.224 4.224 5 C -0.056 4.056 6 C -0.182 4.182 7 C 0.171 3.829 8 N -0.665 5.665 9 C 0.522 3.478 10 O -0.556 6.556 11 C -0.141 4.141 12 C 0.169 3.831 13 N -0.619 5.619 14 C 0.175 3.825 15 C -0.268 4.268 16 H 0.066 0.934 17 C -0.046 4.046 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.270 1.270 21 H -0.291 1.291 22 H -0.287 1.287 23 C -0.191 4.191 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.156 0.844 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.428 0.572 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.014 0.986 36 H 0.018 0.982 37 H 0.024 0.976 38 H 0.250 0.750 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.663 6.124 3.777 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C 0.082 3.918 4 C -0.243 4.243 5 C -0.074 4.074 6 C -0.202 4.202 7 C 0.076 3.924 8 N -0.311 5.311 9 C 0.311 3.689 10 O -0.434 6.434 11 C -0.183 4.183 12 C 0.042 3.958 13 N -0.342 5.342 14 C 0.031 3.969 15 C -0.398 4.398 16 H 0.084 0.916 17 C -0.241 4.241 18 N -0.581 5.581 19 Si 0.797 3.203 20 H -0.195 1.195 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.212 4.212 24 H 0.086 0.914 25 H 0.132 0.868 26 H 0.090 0.910 27 H 0.174 0.826 28 H 0.184 0.816 29 H 0.171 0.829 30 H 0.268 0.732 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.032 0.968 36 H 0.037 0.963 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.729 5.321 3.361 24.549 hybrid contribution 1.125 -0.146 0.726 1.347 sum -22.604 5.174 4.088 23.546 Atomic orbital electron populations 1.23366 0.76094 1.05484 1.02587 1.86066 1.23861 1.27304 1.88649 1.18976 0.91487 0.85364 0.95966 1.21529 1.01275 0.91569 1.09899 1.21168 0.93538 0.98093 0.94637 1.21171 0.94586 0.96994 1.07434 1.17692 0.83059 0.93484 0.98171 1.43593 1.04242 1.31694 1.51615 1.21319 0.90376 0.80902 0.76274 1.90672 1.73479 1.32453 1.46778 1.22239 0.88199 1.03543 1.04366 1.20567 0.82534 0.95190 0.97464 1.44194 1.00804 1.62336 1.26850 1.20630 0.94390 0.94921 0.86994 1.19543 0.97605 1.08543 1.14068 0.91607 1.25830 1.00386 0.97179 1.00747 1.70210 1.19502 1.22061 1.46354 0.85173 0.78569 0.78006 0.78505 1.19489 1.21801 1.21352 1.20430 0.92774 0.98206 1.09836 0.91434 0.86793 0.91048 0.82648 0.81584 0.82851 0.73234 0.88772 0.88267 0.94290 0.93307 0.96776 0.96266 0.95739 0.94101 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.84 10.49 -92.39 -0.97 -9.81 16 3 C 0.13 3.37 6.68 22.49 0.15 3.52 16 4 C -0.22 -4.14 9.04 22.39 0.20 -3.94 16 5 C -0.06 -0.89 10.03 22.24 0.22 -0.67 16 6 C -0.18 -3.49 9.96 22.41 0.22 -3.27 16 7 C 0.17 4.56 6.29 38.14 0.24 4.80 16 8 N -0.66 -17.45 5.34 -303.55 -1.62 -19.07 16 9 C 0.52 17.72 7.67 87.66 0.67 18.39 16 10 O -0.56 -22.90 13.43 -3.05 -0.04 -22.94 16 11 C -0.14 -5.06 6.03 29.85 0.18 -4.88 16 12 C 0.17 7.40 5.00 86.38 0.43 7.83 16 13 N -0.62 -31.84 2.92 -726.90 -2.13 -33.97 16 14 C 0.18 8.81 8.99 127.77 1.15 9.96 16 15 C -0.27 -14.88 9.67 84.03 0.81 -14.07 16 16 H 0.07 3.63 7.83 -2.91 -0.02 3.60 16 17 C -0.05 -2.57 5.24 84.86 0.44 -2.12 16 18 N -0.93 -54.27 10.45 21.65 0.23 -54.04 16 19 Si 0.97 44.92 29.56 68.60 2.03 46.95 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 C -0.19 -6.04 8.63 22.48 0.19 -5.84 16 24 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 25 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 27 H 0.16 1.85 6.29 -2.91 -0.02 1.83 16 28 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 29 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 30 H 0.43 8.21 8.82 -92.71 -0.82 7.40 16 31 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 32 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.04 1.78 8.00 -2.38 -0.02 1.76 16 34 H 0.05 2.07 7.82 -2.38 -0.02 2.05 16 35 H 0.01 0.74 7.35 -2.39 -0.02 0.72 16 36 H 0.02 1.03 7.26 -2.38 -0.02 1.01 16 37 H 0.02 1.06 7.84 -2.39 -0.02 1.04 16 38 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 39 H 0.11 4.28 6.24 -2.91 -0.02 4.26 16 Total: -1.00 -72.48 328.16 3.77 -68.71 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.24 Total: 13.09 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 6.04 Total: 11.09 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -3.52 Total: -107.08 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.01 Total: -32.75 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -72.48 3.77 -68.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072596837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.616 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds