Wall clock time and date at job start Tue Mar 31 2020 01:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35904 * 117.00283 * 2 1 4 4 C 1.38756 * 120.05401 * 359.72428 * 3 2 1 5 5 C 1.38117 * 119.94119 * 179.70048 * 4 3 2 6 6 C 1.38289 * 120.05751 * 0.59913 * 5 4 3 7 7 C 1.38251 * 120.11055 * 359.67437 * 6 5 4 8 8 C 1.50694 * 119.97250 * 180.02562 * 7 6 5 9 9 N 1.46507 * 109.47264 * 269.98122 * 8 7 6 10 10 C 1.34773 * 120.00156 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00211 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99792 * 179.97438 * 10 9 8 13 13 N 1.46500 * 109.46674 * 180.02562 * 12 10 9 14 14 C 1.46503 * 119.99892 * 269.99607 * 13 12 10 15 15 C 1.36938 * 120.00267 * 90.00364 * 13 12 10 16 16 H 1.08001 * 120.00032 * 20.26613 * 15 13 12 17 17 C 1.38805 * 120.00050 * 200.27284 * 15 13 12 18 18 N 1.31626 * 119.99941 * 15.01595 * 17 15 13 19 19 Si 1.86799 * 120.00089 * 195.01530 * 17 15 13 20 20 H 1.48504 * 109.47076 * 85.00348 * 19 17 15 21 21 H 1.48505 * 109.47006 * 205.00134 * 19 17 15 22 22 H 1.48498 * 109.47317 * 324.99959 * 19 17 15 23 23 C 1.38160 * 120.05396 * 0.02663 * 7 6 5 24 24 H 1.09000 * 109.47682 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47169 * 300.00392 * 1 2 3 26 26 H 1.09007 * 109.46762 * 60.00074 * 1 2 3 27 27 H 1.07998 * 120.02712 * 359.97154 * 4 3 2 28 28 H 1.08000 * 119.97386 * 180.29392 * 5 4 3 29 29 H 1.08000 * 119.94920 * 179.70373 * 6 5 4 30 30 H 1.09003 * 109.47333 * 29.97517 * 8 7 6 31 31 H 1.08994 * 109.47513 * 149.97971 * 8 7 6 32 32 H 0.97001 * 119.99806 * 359.97438 * 9 8 7 33 33 H 1.09003 * 109.46732 * 299.99735 * 12 10 9 34 34 H 1.08994 * 109.47063 * 59.99544 * 12 10 9 35 35 H 1.08998 * 109.46986 * 95.10512 * 14 13 12 36 36 H 1.08999 * 109.47086 * 215.10738 * 14 13 12 37 37 H 1.09006 * 109.46894 * 335.10416 * 14 13 12 38 38 H 0.97003 * 119.99667 * 179.97438 * 18 17 15 39 39 H 1.08005 * 120.02512 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0058 5 6 1.9209 3.6047 0.0005 6 6 3.3020 3.6757 0.0000 7 6 4.0561 2.5170 0.0000 8 6 5.5608 2.5980 0.0001 9 7 6.0486 2.6238 -1.3812 10 6 7.3717 2.6944 -1.6274 11 8 8.1587 2.7371 -0.7056 12 6 7.8734 2.7204 -3.0483 13 7 9.3364 2.7980 -3.0482 14 6 10.0006 4.1038 -3.0488 15 6 10.0830 1.6501 -3.0476 16 1 9.6419 0.7189 -3.3713 17 6 11.4066 1.6833 -2.6310 18 7 11.8614 2.7243 -1.9661 19 14 12.5425 0.2506 -3.0139 20 1 13.1150 0.4224 -4.3734 21 1 13.6413 0.2097 -2.0157 22 1 11.7745 -1.0190 -2.9569 23 6 3.4312 1.2848 0.0000 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.2129 2.3204 -0.0107 28 1 1.3341 4.5114 0.0008 29 1 3.7924 4.6380 0.0001 30 1 5.8758 3.5065 0.5135 31 1 5.9715 1.7291 0.5142 32 1 5.4192 2.5893 -2.1185 33 1 7.5582 1.8119 -3.5615 34 1 7.4630 3.5893 -3.5626 35 1 10.2467 4.3867 -2.0254 36 1 10.9147 4.0462 -3.6397 37 1 9.3344 4.8501 -3.4819 38 1 12.7863 2.7473 -1.6747 39 1 4.0207 0.3798 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075828751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:11 Heat of formation + Delta-G solvation = -16.282692 kcal Electronic energy + Delta-G solvation = -20850.980403 eV Core-core repulsion = 17567.230080 eV Total energy + Delta-G solvation = -3283.750323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.38366 -38.81229 -37.69853 -35.15098 -34.09978 -31.50073 -31.07563 -30.46294 -27.76967 -27.35625 -25.80577 -25.19651 -22.73277 -21.69982 -21.06802 -19.61890 -18.08844 -16.69995 -16.49803 -16.21652 -16.16329 -16.00933 -15.42817 -14.71856 -14.52989 -14.12750 -13.87811 -13.37987 -13.31513 -13.01014 -12.86624 -12.70357 -12.22483 -12.06893 -11.65780 -11.64355 -11.34846 -11.07787 -10.99447 -10.78877 -10.59023 -10.30317 -9.94895 -9.81161 -9.29401 -8.85799 -8.46762 -8.43650 -8.36484 -6.71405 -5.62477 -3.06809 1.04423 1.25407 3.00053 3.42213 3.47493 3.50512 3.52725 3.66391 4.06713 4.53920 4.57497 4.58790 4.79565 4.81801 4.88118 5.12563 5.15726 5.20326 5.33163 5.51439 5.63403 5.64708 5.79863 5.89163 6.05760 6.13571 6.21874 6.22400 6.36555 6.46200 6.55652 6.78342 7.01631 7.16101 7.43859 7.82025 7.91451 8.18819 8.45967 9.19335 9.30427 9.92173 10.38822 11.42247 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029462 B = 0.003234 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.148138 B = 8656.448895 C = 9208.239811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.123 3.877 4 C -0.208 4.208 5 C -0.083 4.083 6 C -0.140 4.140 7 C -0.057 4.057 8 C 0.158 3.842 9 N -0.745 5.745 10 C 0.469 3.531 11 O -0.508 6.508 12 C 0.133 3.867 13 N -0.573 5.573 14 C 0.163 3.837 15 C -0.258 4.258 16 H 0.070 0.930 17 C 0.006 3.994 18 N -0.896 5.896 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.280 1.280 23 C -0.134 4.134 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.392 0.608 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.047 0.953 37 H -0.003 1.003 38 H 0.252 0.748 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.541 0.347 2.083 24.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.078 3.922 4 C -0.227 4.227 5 C -0.101 4.101 6 C -0.158 4.158 7 C -0.057 4.057 8 C 0.034 3.966 9 N -0.403 5.403 10 C 0.253 3.747 11 O -0.380 6.380 12 C 0.000 4.000 13 N -0.292 5.292 14 C 0.018 3.982 15 C -0.388 4.388 16 H 0.088 0.912 17 C -0.193 4.193 18 N -0.539 5.539 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.153 4.153 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.225 0.775 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.062 0.938 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.569 0.237 2.820 23.739 hybrid contribution -0.117 -0.654 -0.147 0.681 sum -23.687 -0.417 2.674 23.841 Atomic orbital electron populations 1.23042 0.78500 1.03908 1.01251 1.86091 1.21277 1.26959 1.88774 1.19006 0.92256 0.84158 0.96777 1.21231 0.99897 0.92464 1.09079 1.20921 0.94533 0.96951 0.97697 1.21056 0.93637 0.98272 1.02882 1.19829 0.95639 0.92307 0.97965 1.20083 0.87540 1.02755 0.86190 1.46665 1.08309 1.78808 1.06498 1.23731 0.80420 0.75074 0.95523 1.90706 1.54724 1.46247 1.46318 1.21016 0.87368 1.00886 0.90706 1.43919 0.98056 1.03909 1.83343 1.20862 0.94125 0.83254 0.99955 1.19168 0.93164 0.88552 1.37885 0.91186 1.25032 0.98762 0.97602 0.97909 1.70131 1.15068 1.30137 1.38600 0.86255 0.80610 0.82046 0.77464 1.21413 1.21758 1.20564 1.20400 0.91268 0.98504 1.05174 0.88279 0.92732 0.92681 0.85632 0.85718 0.85559 0.91098 0.91154 0.77493 0.90880 0.91490 0.94707 0.93447 0.98413 0.93804 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.36 10.50 -19.44 -0.20 -3.57 16 3 C 0.12 1.36 6.69 -39.21 -0.26 1.10 16 4 C -0.21 -1.93 9.04 -39.43 -0.36 -2.29 16 5 C -0.08 -0.76 10.04 -39.61 -0.40 -1.15 16 6 C -0.14 -1.47 9.70 -39.56 -0.38 -1.85 16 7 C -0.06 -0.68 5.25 -104.65 -0.55 -1.23 16 8 C 0.16 2.31 5.80 -5.19 -0.03 2.28 16 9 N -0.75 -11.71 5.55 -61.47 -0.34 -12.05 16 10 C 0.47 9.90 7.90 -10.98 -0.09 9.81 16 11 O -0.51 -13.68 16.43 5.56 0.09 -13.59 16 12 C 0.13 2.75 6.19 -5.19 -0.03 2.72 16 13 N -0.57 -15.10 2.41 -182.50 -0.44 -15.54 16 14 C 0.16 4.22 9.02 59.85 0.54 4.76 16 15 C -0.26 -7.43 9.68 -15.06 -0.15 -7.57 16 16 H 0.07 1.95 7.86 -52.49 -0.41 1.53 16 17 C 0.01 0.18 5.06 -17.43 -0.09 0.10 16 18 N -0.90 -27.64 10.66 55.49 0.59 -27.05 16 19 Si 0.91 22.73 29.58 -169.99 -5.03 17.70 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.13 -1.62 9.64 -39.43 -0.38 -2.00 16 24 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.28 7.67 -51.93 -0.40 -0.12 16 26 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 27 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 28 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 31 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 32 H 0.39 5.00 8.46 -40.82 -0.35 4.65 16 33 H 0.07 1.38 8.03 -51.93 -0.42 0.96 16 34 H 0.07 1.17 7.86 -51.93 -0.41 0.76 16 35 H 0.03 1.01 7.40 -51.93 -0.38 0.63 16 36 H 0.05 1.29 7.21 -51.93 -0.37 0.91 16 37 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 38 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 333.34 15.07 5.02 5.02 Total: -1.00 -36.10 333.34 -7.03 -43.13 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.54 Total: 0.10 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.18 Total: 5.84 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.19 Total: -54.64 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.11 Total: -17.16 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.10 -7.03 -43.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.850 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds