Wall clock time and date at job start Tue Mar 31 2020 01:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35904 * 117.00283 * 2 1 4 4 C 1.38756 * 120.05401 * 359.72428 * 3 2 1 5 5 C 1.38117 * 119.94119 * 179.70048 * 4 3 2 6 6 C 1.38289 * 120.05751 * 0.59913 * 5 4 3 7 7 C 1.38251 * 120.11055 * 359.67437 * 6 5 4 8 8 C 1.50694 * 119.97250 * 180.02562 * 7 6 5 9 9 N 1.46507 * 109.47264 * 269.98122 * 8 7 6 10 10 C 1.34773 * 120.00156 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00211 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99792 * 179.97438 * 10 9 8 13 13 N 1.46500 * 109.46674 * 180.02562 * 12 10 9 14 14 C 1.46503 * 119.99892 * 269.99607 * 13 12 10 15 15 C 1.36938 * 120.00267 * 90.00364 * 13 12 10 16 16 H 1.08001 * 120.00032 * 20.26613 * 15 13 12 17 17 C 1.38805 * 120.00050 * 200.27284 * 15 13 12 18 18 N 1.31626 * 119.99941 * 15.01595 * 17 15 13 19 19 Si 1.86799 * 120.00089 * 195.01530 * 17 15 13 20 20 H 1.48504 * 109.47076 * 85.00348 * 19 17 15 21 21 H 1.48505 * 109.47006 * 205.00134 * 19 17 15 22 22 H 1.48498 * 109.47317 * 324.99959 * 19 17 15 23 23 C 1.38160 * 120.05396 * 0.02663 * 7 6 5 24 24 H 1.09000 * 109.47682 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47169 * 300.00392 * 1 2 3 26 26 H 1.09007 * 109.46762 * 60.00074 * 1 2 3 27 27 H 1.07998 * 120.02712 * 359.97154 * 4 3 2 28 28 H 1.08000 * 119.97386 * 180.29392 * 5 4 3 29 29 H 1.08000 * 119.94920 * 179.70373 * 6 5 4 30 30 H 1.09003 * 109.47333 * 29.97517 * 8 7 6 31 31 H 1.08994 * 109.47513 * 149.97971 * 8 7 6 32 32 H 0.97001 * 119.99806 * 359.97438 * 9 8 7 33 33 H 1.09003 * 109.46732 * 299.99735 * 12 10 9 34 34 H 1.08994 * 109.47063 * 59.99544 * 12 10 9 35 35 H 1.08998 * 109.46986 * 95.10512 * 14 13 12 36 36 H 1.08999 * 109.47086 * 215.10738 * 14 13 12 37 37 H 1.09006 * 109.46894 * 335.10416 * 14 13 12 38 38 H 0.97003 * 119.99667 * 179.97438 * 18 17 15 39 39 H 1.08005 * 120.02512 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0058 5 6 1.9209 3.6047 0.0005 6 6 3.3020 3.6757 0.0000 7 6 4.0561 2.5170 0.0000 8 6 5.5608 2.5980 0.0001 9 7 6.0486 2.6238 -1.3812 10 6 7.3717 2.6944 -1.6274 11 8 8.1587 2.7371 -0.7056 12 6 7.8734 2.7204 -3.0483 13 7 9.3364 2.7980 -3.0482 14 6 10.0006 4.1038 -3.0488 15 6 10.0830 1.6501 -3.0476 16 1 9.6419 0.7189 -3.3713 17 6 11.4066 1.6833 -2.6310 18 7 11.8614 2.7243 -1.9661 19 14 12.5425 0.2506 -3.0139 20 1 13.1150 0.4224 -4.3734 21 1 13.6413 0.2097 -2.0157 22 1 11.7745 -1.0190 -2.9569 23 6 3.4312 1.2848 0.0000 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.2129 2.3204 -0.0107 28 1 1.3341 4.5114 0.0008 29 1 3.7924 4.6380 0.0001 30 1 5.8758 3.5065 0.5135 31 1 5.9715 1.7291 0.5142 32 1 5.4192 2.5893 -2.1185 33 1 7.5582 1.8119 -3.5615 34 1 7.4630 3.5893 -3.5626 35 1 10.2467 4.3867 -2.0254 36 1 10.9147 4.0462 -3.6397 37 1 9.3344 4.8501 -3.4819 38 1 12.7863 2.7473 -1.6747 39 1 4.0207 0.3798 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075828751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:10 Heat of formation + Delta-G solvation = -41.789706 kcal Electronic energy + Delta-G solvation = -20852.086470 eV Core-core repulsion = 17567.230080 eV Total energy + Delta-G solvation = -3284.856390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.20129 -40.36022 -38.63052 -37.05750 -35.55658 -33.32525 -32.35288 -31.33795 -29.19313 -28.15904 -27.87354 -26.54366 -23.62086 -23.43446 -22.07597 -21.25711 -19.01597 -18.73473 -17.72450 -17.27594 -17.13927 -16.96055 -16.64211 -16.38850 -16.11874 -15.35137 -15.13662 -14.92214 -14.66256 -14.53298 -14.05484 -13.73497 -13.53812 -13.46809 -13.02933 -12.81754 -12.77218 -12.52663 -12.47861 -12.21182 -12.02458 -12.00365 -11.86505 -11.76243 -10.92417 -10.54366 -9.95913 -9.90709 -9.19821 -8.81042 -7.80177 -5.27598 0.20516 0.45429 1.45748 1.48453 1.56487 1.97796 2.31478 2.40952 2.53950 2.89982 3.36465 3.65327 3.72674 3.85609 4.09778 4.20310 4.31799 4.33285 4.36888 4.41736 4.52969 4.63275 4.71911 4.74802 4.76995 4.78910 4.83645 5.02434 5.29367 5.31271 5.44660 5.60050 5.60585 5.62121 5.75865 5.76804 6.29394 6.45171 6.78967 7.14370 7.58752 7.87198 8.27037 9.23639 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029462 B = 0.003234 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.148138 B = 8656.448895 C = 9208.239811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.114 3.886 4 C -0.200 4.200 5 C -0.077 4.077 6 C -0.144 4.144 7 C -0.064 4.064 8 C 0.163 3.837 9 N -0.720 5.720 10 C 0.472 3.528 11 O -0.575 6.575 12 C 0.128 3.872 13 N -0.593 5.593 14 C 0.177 3.823 15 C -0.265 4.265 16 H 0.077 0.923 17 C -0.057 4.057 18 N -0.935 5.935 19 Si 0.973 3.027 20 H -0.277 1.277 21 H -0.300 1.300 22 H -0.270 1.270 23 C -0.153 4.153 24 H 0.115 0.885 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.135 0.865 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.411 0.589 33 H 0.096 0.904 34 H 0.108 0.892 35 H -0.008 1.008 36 H 0.024 0.976 37 H 0.039 0.961 38 H 0.245 0.755 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.937 0.291 1.008 27.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.069 3.931 4 C -0.218 4.218 5 C -0.094 4.094 6 C -0.162 4.162 7 C -0.064 4.064 8 C 0.039 3.961 9 N -0.376 5.376 10 C 0.257 3.743 11 O -0.452 6.452 12 C -0.003 4.003 13 N -0.314 5.314 14 C 0.032 3.968 15 C -0.395 4.395 16 H 0.095 0.905 17 C -0.253 4.253 18 N -0.581 5.581 19 Si 0.801 3.199 20 H -0.203 1.203 21 H -0.226 1.226 22 H -0.195 1.195 23 C -0.172 4.172 24 H 0.133 0.867 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.172 0.828 28 H 0.174 0.826 29 H 0.153 0.847 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.248 0.752 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.011 0.989 36 H 0.043 0.957 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -27.085 0.164 1.705 27.139 hybrid contribution 0.648 -0.641 0.199 0.933 sum -26.437 -0.478 1.904 26.510 Atomic orbital electron populations 1.23353 0.76266 1.05516 1.02463 1.86065 1.23659 1.26992 1.88719 1.19111 0.91999 0.85160 0.96842 1.21581 1.01327 0.91703 1.07234 1.21277 0.93981 0.98168 0.96016 1.21211 0.94513 0.97879 1.02620 1.19494 0.93654 0.93170 1.00128 1.20008 0.89696 1.01555 0.84801 1.46230 1.06978 1.76389 1.08015 1.23491 0.81511 0.74320 0.94948 1.90698 1.56788 1.49735 1.48012 1.21276 0.84530 1.03851 0.90649 1.44089 1.00344 1.03169 1.83770 1.20577 0.94407 0.84492 0.97309 1.19573 0.93751 0.89547 1.36641 0.90537 1.25891 1.00536 1.00377 0.98447 1.70340 1.14847 1.32355 1.40532 0.85202 0.78264 0.79242 0.77200 1.20296 1.22644 1.19458 1.20373 0.92237 0.98053 1.06520 0.86720 0.91466 0.91360 0.82783 0.82579 0.84709 0.91754 0.93065 0.75245 0.88637 0.87415 0.98922 0.95741 0.94210 0.94580 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.65 10.50 -92.47 -0.97 -7.62 16 3 C 0.11 2.32 6.69 22.51 0.15 2.47 16 4 C -0.20 -3.02 9.04 22.36 0.20 -2.82 16 5 C -0.08 -1.11 10.04 22.25 0.22 -0.89 16 6 C -0.14 -2.68 9.70 22.28 0.22 -2.47 16 7 C -0.06 -1.48 5.25 -19.88 -0.10 -1.58 16 8 C 0.16 4.80 5.80 85.63 0.50 5.30 16 9 N -0.72 -21.95 5.55 -466.78 -2.59 -24.54 16 10 C 0.47 19.80 7.90 87.66 0.69 20.49 16 11 O -0.58 -31.88 16.43 -3.03 -0.05 -31.93 16 12 C 0.13 5.06 6.19 85.64 0.53 5.59 16 13 N -0.59 -31.22 2.41 -731.29 -1.77 -32.99 16 14 C 0.18 9.32 9.02 127.77 1.15 10.47 16 15 C -0.26 -15.33 9.68 84.03 0.81 -14.51 16 16 H 0.08 4.21 7.86 -2.91 -0.02 4.19 16 17 C -0.06 -3.44 5.06 84.86 0.43 -3.01 16 18 N -0.93 -59.87 10.66 21.65 0.23 -59.64 16 19 Si 0.97 47.60 29.58 68.60 2.03 49.63 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 21 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 23 C -0.15 -3.60 9.64 22.36 0.22 -3.38 16 24 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.48 7.67 -2.39 -0.02 0.46 16 26 H 0.07 0.48 7.65 -2.38 -0.02 0.46 16 27 H 0.15 1.41 6.30 -2.91 -0.02 1.39 16 28 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 29 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 31 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 32 H 0.41 9.58 8.46 -92.71 -0.78 8.79 16 33 H 0.10 3.36 8.03 -2.39 -0.02 3.34 16 34 H 0.11 3.38 7.86 -2.39 -0.02 3.36 16 35 H -0.01 -0.47 7.40 -2.39 -0.02 -0.48 16 36 H 0.02 1.35 7.21 -2.39 -0.02 1.33 16 37 H 0.04 1.70 7.84 -2.38 -0.02 1.68 16 38 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.12 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -81.83 333.34 3.28 -78.55 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.27 Total: 11.59 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 6.13 Total: 16.96 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -4.12 Total: -117.17 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.02 Total: -39.55 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -81.83 3.28 -78.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.760 kcal (2) G-P(sol) polarization free energy of solvation -81.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds