Wall clock time and date at job start Tue Mar 31 2020 00:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47174 * 2 1 4 4 C 1.46506 * 119.99688 * 269.99923 * 3 2 1 5 5 C 1.53000 * 109.46863 * 269.99800 * 4 3 2 6 6 O 1.42898 * 109.47046 * 65.00093 * 5 4 3 7 7 C 1.34771 * 120.00590 * 89.99685 * 3 2 1 8 8 O 1.21582 * 120.00518 * 180.02562 * 7 3 2 9 9 N 1.34779 * 119.99639 * 0.02562 * 7 3 2 10 10 C 1.39243 * 119.99834 * 184.28109 * 9 7 3 11 11 C 1.39481 * 119.83390 * 324.71509 * 10 9 7 12 12 C 1.36374 * 120.16897 * 180.25326 * 11 10 9 13 13 C 1.40867 * 119.82992 * 359.50838 * 12 11 10 14 14 C 1.41148 * 120.16720 * 180.22976 * 13 12 11 15 15 H 1.08004 * 120.00207 * 215.05202 * 14 13 12 16 16 C 1.39899 * 120.00070 * 35.04244 * 14 13 12 17 17 N 1.30882 * 119.99810 * 355.52207 * 16 14 13 18 18 Si 1.86797 * 119.99967 * 175.52128 * 16 14 13 19 19 H 1.48503 * 109.47560 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47095 * 120.00280 * 18 16 14 21 21 H 1.48503 * 109.47423 * 240.00137 * 18 16 14 22 22 C 1.40876 * 119.66895 * 0.51195 * 13 12 11 23 23 C 1.36372 * 119.82821 * 359.73694 * 22 13 12 24 24 H 1.09000 * 109.47243 * 60.00156 * 1 2 3 25 25 H 1.08997 * 109.46999 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47152 * 300.00218 * 1 2 3 27 27 H 1.08997 * 109.47152 * 239.99782 * 2 1 3 28 28 H 1.09005 * 109.47267 * 119.99118 * 2 1 3 29 29 H 1.09002 * 109.46915 * 29.99413 * 4 3 2 30 30 H 1.09001 * 109.46999 * 149.99703 * 4 3 2 31 31 H 1.09005 * 109.46894 * 184.99497 * 5 4 3 32 32 H 1.08993 * 109.47394 * 305.00068 * 5 4 3 33 33 H 0.96708 * 114.00163 * 179.97438 * 6 5 4 34 34 H 0.96997 * 120.00146 * 4.27540 * 9 7 3 35 35 H 1.08006 * 119.91580 * 359.97438 * 11 10 9 36 36 H 1.08001 * 120.08344 * 179.74844 * 12 11 10 37 37 H 0.97004 * 119.99397 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.08485 * 179.71365 * 22 13 12 39 39 H 1.07995 * 119.91502 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7104 6 8 3.8944 0.4432 -1.9934 7 6 2.2429 2.0167 1.1671 8 8 2.6478 3.1631 1.1671 9 7 2.0188 1.3812 2.3343 10 6 2.1649 2.0650 3.5385 11 6 3.1596 3.0339 3.6700 12 6 3.3122 3.7040 4.8479 13 6 2.4554 3.4228 5.9301 14 6 2.6039 4.1156 7.1509 15 1 2.4167 3.6084 8.0859 16 6 2.9936 5.4592 7.1498 17 7 3.3053 6.0492 6.0239 18 14 3.0690 6.4111 8.7553 19 1 2.6719 5.5224 9.8769 20 1 4.4541 6.8985 8.9772 21 1 2.1416 7.5690 8.6884 22 6 1.4534 2.4425 5.7898 23 6 1.3163 1.7771 4.6074 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.5817 1.6875 -2.0285 30 1 2.0955 3.1410 -1.1385 31 1 3.9157 2.4160 -2.6065 32 1 4.3863 2.1341 -0.9132 33 1 4.7899 0.2173 -2.2803 34 1 1.7555 0.4477 2.3356 35 1 3.8136 3.2508 2.8382 36 1 4.0854 4.4511 4.9494 37 1 3.5752 6.9810 6.0232 38 1 0.7959 2.2183 6.6167 39 1 0.5490 1.0250 4.4984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076085371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:11 Heat of formation + Delta-G solvation = -50.308098 kcal Electronic energy + Delta-G solvation = -21557.501265 eV Core-core repulsion = 18272.275489 eV Total energy + Delta-G solvation = -3285.225775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.16180 -37.78039 -36.83640 -35.43324 -34.42462 -32.81483 -31.16308 -29.49809 -29.21321 -28.10045 -24.90614 -23.36335 -22.89343 -21.24160 -20.65929 -19.03040 -18.08858 -17.30097 -17.21491 -16.69445 -15.64248 -15.26723 -14.78818 -14.47362 -13.95371 -13.91475 -13.76069 -13.50343 -13.11327 -12.76077 -12.50424 -12.13045 -12.03013 -11.95717 -11.65121 -11.47163 -11.41174 -11.13094 -11.06487 -10.84530 -10.43538 -10.17302 -9.88695 -9.79385 -9.49189 -9.00465 -8.69216 -8.48181 -7.44383 -6.78268 -6.52649 -4.26028 2.73102 2.98656 3.11272 3.14863 3.18140 3.22351 3.74035 4.04116 4.17921 4.35479 4.79562 4.92904 5.05312 5.11832 5.22486 5.28972 5.37081 5.68435 5.72256 5.73364 5.75674 5.85706 6.14043 6.20437 6.44717 6.61251 6.89257 6.98709 7.12064 7.21440 7.36057 7.42319 7.48098 7.72500 7.87985 8.10196 8.16880 8.36518 8.51828 8.75112 9.00660 9.01521 9.18521 10.38648 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031506 B = 0.003864 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.508133 B = 7245.336387 C = 7830.753240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.111 3.889 3 N -0.628 5.628 4 C 0.138 3.862 5 C 0.057 3.943 6 O -0.573 6.573 7 C 0.696 3.304 8 O -0.576 6.576 9 N -0.668 5.668 10 C 0.026 3.974 11 C -0.094 4.094 12 C -0.142 4.142 13 C 0.098 3.902 14 C -0.465 4.465 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.810 5.810 18 Si 0.914 3.086 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.202 4.202 23 C -0.117 4.117 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.375 0.625 34 H 0.391 0.609 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.276 0.724 38 H 0.096 0.904 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 -9.967 -13.152 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 N -0.366 5.366 4 C 0.014 3.986 5 C -0.022 4.022 6 O -0.378 6.378 7 C 0.399 3.601 8 O -0.453 6.453 9 N -0.315 5.315 10 C -0.067 4.067 11 C -0.114 4.114 12 C -0.163 4.163 13 C 0.095 3.905 14 C -0.496 4.496 15 H 0.093 0.907 16 C -0.146 4.146 17 N -0.437 5.437 18 Si 0.739 3.261 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.223 4.223 23 C -0.138 4.138 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.222 0.778 34 H 0.226 0.774 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.434 -8.906 -13.075 15.885 hybrid contribution 0.340 0.100 0.418 0.548 sum -1.095 -8.806 -12.657 15.458 Atomic orbital electron populations 1.22255 0.96365 1.01951 1.02668 1.21442 0.93771 0.82890 1.03158 1.47082 1.70739 1.14237 1.04529 1.21291 0.94258 0.98760 0.84321 1.22727 0.98470 0.82024 0.98937 1.86445 1.35534 1.25564 1.90271 1.16000 0.79319 0.84461 0.80360 1.90915 1.52020 1.16682 1.85724 1.42272 1.72132 1.13289 1.03782 1.17126 1.01935 1.02922 0.84688 1.20668 0.96643 0.96538 0.97590 1.21300 1.00979 1.01185 0.92794 1.17713 0.89128 0.89985 0.93655 1.19491 1.41063 0.95334 0.93696 0.90693 1.25874 0.92723 0.98384 0.97597 1.69812 1.34556 1.12568 1.26772 0.86179 0.78396 0.79541 0.81996 1.18665 1.20060 1.20062 1.20670 1.01406 1.03640 0.96537 1.20043 0.97989 1.01521 0.94228 0.92432 0.91717 0.92252 0.89427 0.91362 0.90348 0.88418 0.93050 0.92889 0.77820 0.77449 0.87415 0.85282 0.91248 0.88599 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 10.24 37.16 0.38 -1.34 16 2 C 0.11 1.23 5.75 -4.04 -0.02 1.20 16 3 N -0.63 -8.97 2.44 -179.42 -0.44 -9.41 16 4 C 0.14 1.69 5.81 -4.04 -0.02 1.67 16 5 C 0.06 0.63 7.39 37.16 0.27 0.90 16 6 O -0.57 -5.75 12.48 -35.23 -0.44 -6.19 16 7 C 0.70 13.28 8.11 -86.92 -0.70 12.58 16 8 O -0.58 -13.40 13.34 5.29 0.07 -13.33 16 9 N -0.67 -12.56 5.18 -14.10 -0.07 -12.63 16 10 C 0.03 0.60 6.31 -83.57 -0.53 0.07 16 11 C -0.09 -2.42 8.61 -39.79 -0.34 -2.77 16 12 C -0.14 -3.92 8.61 -39.26 -0.34 -4.26 16 13 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 14 C -0.46 -12.67 9.02 -37.86 -0.34 -13.01 16 15 H 0.07 1.95 7.85 -52.48 -0.41 1.54 16 16 C 0.07 1.81 5.42 -17.33 -0.09 1.71 16 17 N -0.81 -22.09 10.61 55.55 0.59 -21.50 16 18 Si 0.91 19.49 29.56 -169.99 -5.03 14.47 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 C -0.20 -5.01 9.74 -39.26 -0.38 -5.39 16 23 C -0.12 -2.64 9.90 -39.79 -0.39 -3.03 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.90 7.11 -51.93 -0.37 0.53 16 28 H 0.07 0.73 6.30 -51.93 -0.33 0.40 16 29 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.10 1.33 7.42 -51.93 -0.39 0.94 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.38 2.25 9.12 45.56 0.42 2.67 16 34 H 0.39 5.98 6.51 -40.82 -0.27 5.71 16 35 H 0.11 2.81 6.22 -52.48 -0.33 2.48 16 36 H 0.13 3.71 6.15 -52.49 -0.32 3.39 16 37 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 38 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -32.64 325.27 -8.03 -40.66 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -4.51 Total: 12.60 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -3.11 Total: -9.57 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.08 Total: -43.54 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.37 Total: -19.52 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.64 -8.03 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076085371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.643 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds