Wall clock time and date at job start Tue Mar 31 2020 00:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47174 * 2 1 4 4 C 1.46506 * 119.99688 * 269.99923 * 3 2 1 5 5 C 1.53000 * 109.46863 * 269.99800 * 4 3 2 6 6 O 1.42898 * 109.47046 * 65.00093 * 5 4 3 7 7 C 1.34771 * 120.00590 * 89.99685 * 3 2 1 8 8 O 1.21582 * 120.00518 * 180.02562 * 7 3 2 9 9 N 1.34779 * 119.99639 * 0.02562 * 7 3 2 10 10 C 1.39243 * 119.99834 * 184.28109 * 9 7 3 11 11 C 1.39481 * 119.83390 * 324.71509 * 10 9 7 12 12 C 1.36374 * 120.16897 * 180.25326 * 11 10 9 13 13 C 1.40867 * 119.82992 * 359.50838 * 12 11 10 14 14 C 1.41148 * 120.16720 * 180.22976 * 13 12 11 15 15 H 1.08004 * 120.00207 * 215.05202 * 14 13 12 16 16 C 1.39899 * 120.00070 * 35.04244 * 14 13 12 17 17 N 1.30882 * 119.99810 * 355.52207 * 16 14 13 18 18 Si 1.86797 * 119.99967 * 175.52128 * 16 14 13 19 19 H 1.48503 * 109.47560 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47095 * 120.00280 * 18 16 14 21 21 H 1.48503 * 109.47423 * 240.00137 * 18 16 14 22 22 C 1.40876 * 119.66895 * 0.51195 * 13 12 11 23 23 C 1.36372 * 119.82821 * 359.73694 * 22 13 12 24 24 H 1.09000 * 109.47243 * 60.00156 * 1 2 3 25 25 H 1.08997 * 109.46999 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47152 * 300.00218 * 1 2 3 27 27 H 1.08997 * 109.47152 * 239.99782 * 2 1 3 28 28 H 1.09005 * 109.47267 * 119.99118 * 2 1 3 29 29 H 1.09002 * 109.46915 * 29.99413 * 4 3 2 30 30 H 1.09001 * 109.46999 * 149.99703 * 4 3 2 31 31 H 1.09005 * 109.46894 * 184.99497 * 5 4 3 32 32 H 1.08993 * 109.47394 * 305.00068 * 5 4 3 33 33 H 0.96708 * 114.00163 * 179.97438 * 6 5 4 34 34 H 0.96997 * 120.00146 * 4.27540 * 9 7 3 35 35 H 1.08006 * 119.91580 * 359.97438 * 11 10 9 36 36 H 1.08001 * 120.08344 * 179.74844 * 12 11 10 37 37 H 0.97004 * 119.99397 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.08485 * 179.71365 * 22 13 12 39 39 H 1.07995 * 119.91502 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7104 6 8 3.8944 0.4432 -1.9934 7 6 2.2429 2.0167 1.1671 8 8 2.6478 3.1631 1.1671 9 7 2.0188 1.3812 2.3343 10 6 2.1649 2.0650 3.5385 11 6 3.1596 3.0339 3.6700 12 6 3.3122 3.7040 4.8479 13 6 2.4554 3.4228 5.9301 14 6 2.6039 4.1156 7.1509 15 1 2.4167 3.6084 8.0859 16 6 2.9936 5.4592 7.1498 17 7 3.3053 6.0492 6.0239 18 14 3.0690 6.4111 8.7553 19 1 2.6719 5.5224 9.8769 20 1 4.4541 6.8985 8.9772 21 1 2.1416 7.5690 8.6884 22 6 1.4534 2.4425 5.7898 23 6 1.3163 1.7771 4.6074 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.5817 1.6875 -2.0285 30 1 2.0955 3.1410 -1.1385 31 1 3.9157 2.4160 -2.6065 32 1 4.3863 2.1341 -0.9132 33 1 4.7899 0.2173 -2.2803 34 1 1.7555 0.4477 2.3356 35 1 3.8136 3.2508 2.8382 36 1 4.0854 4.4511 4.9494 37 1 3.5752 6.9810 6.0232 38 1 0.7959 2.2183 6.6167 39 1 0.5490 1.0250 4.4984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076085371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:09 Heat of formation + Delta-G solvation = -72.885127 kcal Electronic energy + Delta-G solvation = -21558.480278 eV Core-core repulsion = 18272.275489 eV Total energy + Delta-G solvation = -3286.204789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.63383 -39.43929 -37.99785 -36.60742 -36.18408 -34.62482 -32.12337 -31.42772 -30.93029 -29.40951 -26.72431 -24.33597 -24.15089 -23.13515 -22.39033 -20.53824 -19.32294 -19.19062 -18.28073 -18.08429 -17.09040 -16.96399 -16.22495 -15.72495 -15.69603 -15.17617 -14.96120 -14.59167 -14.51718 -14.45762 -13.98286 -13.71472 -13.55245 -13.29709 -13.03474 -12.88680 -12.78973 -12.59802 -12.37712 -12.31886 -11.97445 -11.77094 -11.63373 -11.28599 -11.00093 -10.82244 -10.51991 -9.69075 -9.42614 -8.67506 -8.47246 -6.30145 0.87642 1.15210 1.39741 1.47169 1.55981 1.71243 2.18796 2.25954 2.84621 3.04057 3.39701 3.71617 4.02336 4.14277 4.20302 4.39321 4.40469 4.44881 4.49942 4.56337 4.76355 4.84964 4.93460 4.97357 5.02835 5.12933 5.18273 5.34040 5.36395 5.44616 5.61146 5.72127 5.83535 6.07729 6.15531 6.18944 6.39092 6.73791 6.85990 6.98792 7.03127 7.05569 7.65281 8.46244 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031506 B = 0.003864 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.508133 B = 7245.336387 C = 7830.753240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.617 5.617 4 C 0.129 3.871 5 C 0.067 3.933 6 O -0.579 6.579 7 C 0.691 3.309 8 O -0.625 6.625 9 N -0.659 5.659 10 C 0.040 3.960 11 C -0.108 4.108 12 C -0.166 4.166 13 C 0.064 3.936 14 C -0.497 4.497 15 H 0.080 0.920 16 C 0.022 3.978 17 N -0.849 5.849 18 Si 0.991 3.009 19 H -0.253 1.253 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.207 4.207 23 C -0.110 4.110 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.040 0.960 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.022 0.978 33 H 0.394 0.606 34 H 0.411 0.589 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.281 0.719 38 H 0.114 0.886 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 -11.963 -13.877 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.015 4.015 3 N -0.354 5.354 4 C 0.006 3.994 5 C -0.013 4.013 6 O -0.387 6.387 7 C 0.393 3.607 8 O -0.506 6.506 9 N -0.308 5.308 10 C -0.054 4.054 11 C -0.129 4.129 12 C -0.186 4.186 13 C 0.062 3.938 14 C -0.528 4.528 15 H 0.098 0.902 16 C -0.189 4.189 17 N -0.478 5.478 18 Si 0.812 3.188 19 H -0.177 1.177 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.226 4.226 23 C -0.130 4.130 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.059 0.941 27 H 0.122 0.878 28 H 0.092 0.908 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.040 0.960 33 H 0.244 0.756 34 H 0.249 0.751 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.132 0.868 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.832 -10.989 -13.860 17.913 hybrid contribution 0.759 0.569 0.426 1.040 sum -2.073 -10.420 -13.434 17.127 Atomic orbital electron populations 1.22206 0.95037 1.03465 1.01894 1.21709 0.94748 0.80791 1.04270 1.47167 1.69335 1.15350 1.03498 1.21514 0.96043 0.97901 0.83945 1.22519 0.96677 0.83042 0.99018 1.86378 1.37336 1.24666 1.90322 1.16236 0.78952 0.84076 0.81453 1.90890 1.54069 1.19072 1.86573 1.42054 1.72157 1.14071 1.02556 1.17179 1.00328 1.01563 0.86359 1.20654 0.97785 0.97840 0.96594 1.21160 1.01448 1.01874 0.94136 1.18047 0.90293 0.91515 0.93956 1.19783 1.42763 0.96393 0.93887 0.90230 1.26845 0.91686 0.99023 1.01327 1.69935 1.35548 1.13098 1.29188 0.85023 0.78637 0.77867 0.77268 1.17679 1.19291 1.19501 1.20944 1.00807 1.02863 0.98023 1.20389 0.98200 1.01610 0.92845 0.92154 0.89056 0.94075 0.87774 0.90787 0.87327 0.90300 0.90416 0.95984 0.75641 0.75066 0.88723 0.87825 0.90844 0.86816 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 10.24 71.98 0.74 -2.00 16 2 C 0.11 2.03 5.75 86.38 0.50 2.52 16 3 N -0.62 -16.68 2.44 -839.82 -2.05 -18.72 16 4 C 0.13 2.99 5.81 86.38 0.50 3.49 16 5 C 0.07 1.36 7.39 71.98 0.53 1.90 16 6 O -0.58 -10.10 12.48 -148.98 -1.86 -11.96 16 7 C 0.69 26.13 8.11 179.06 1.45 27.58 16 8 O -0.63 -29.99 13.34 -3.97 -0.05 -30.04 16 9 N -0.66 -23.98 5.18 -316.78 -1.64 -25.62 16 10 C 0.04 1.82 6.31 38.56 0.24 2.06 16 11 C -0.11 -5.80 8.61 22.13 0.19 -5.61 16 12 C -0.17 -9.62 8.61 22.48 0.19 -9.43 16 13 C 0.06 3.63 5.55 -21.28 -0.12 3.51 16 14 C -0.50 -27.84 9.02 23.39 0.21 -27.62 16 15 H 0.08 4.21 7.85 -2.91 -0.02 4.18 16 16 C 0.02 1.18 5.42 85.24 0.46 1.64 16 17 N -0.85 -48.38 10.61 21.82 0.23 -48.15 16 18 Si 0.99 40.55 29.56 68.60 2.03 42.57 16 19 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 20 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 22 C -0.21 -10.11 9.74 22.48 0.22 -9.89 16 23 C -0.11 -4.76 9.90 22.13 0.22 -4.54 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.10 1.72 7.11 -2.39 -0.02 1.70 16 28 H 0.07 1.33 6.30 -2.38 -0.02 1.31 16 29 H 0.11 1.87 8.07 -2.39 -0.02 1.85 16 30 H 0.08 2.14 7.42 -2.39 -0.02 2.13 16 31 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.39 3.73 9.12 -74.05 -0.68 3.05 16 34 H 0.41 11.49 6.51 -92.71 -0.60 10.89 16 35 H 0.09 5.24 6.22 -2.91 -0.02 5.22 16 36 H 0.10 6.43 6.15 -2.91 -0.02 6.41 16 37 H 0.28 14.64 8.30 -92.71 -0.77 13.88 16 38 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 39 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -74.40 325.27 1.80 -72.60 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.20 Total: 35.70 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 5.34 Total: -16.38 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -3.46 Total: -92.49 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.91 Total: -42.00 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Total: -74.40 1.80 -72.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076085371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.288 kcal (2) G-P(sol) polarization free energy of solvation -74.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds