Wall clock time and date at job start Tue Mar 31 2020 01:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00439 * 2 1 4 4 C 1.50697 * 109.46890 * 270.00234 * 3 2 1 5 5 H 1.07998 * 120.00647 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99851 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00217 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00055 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46931 * 90.00102 * 8 6 4 10 10 H 1.48500 * 109.47495 * 209.99863 * 8 6 4 11 11 H 1.48500 * 109.47355 * 329.99981 * 8 6 4 12 12 C 1.34777 * 119.99784 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00115 * 180.02562 * 12 2 1 14 14 C 1.50702 * 120.00138 * 0.02562 * 12 2 1 15 15 C 1.52998 * 109.47505 * 179.97438 * 14 12 2 16 16 C 1.52994 * 109.47556 * 179.97438 * 15 14 12 17 17 O 1.42894 * 109.47573 * 179.97438 * 16 15 14 18 18 C 1.35910 * 117.00621 * 180.02562 * 17 16 15 19 19 C 1.39138 * 120.47706 * 180.24394 * 18 17 16 20 20 C 1.38535 * 118.37336 * 180.24194 * 19 18 17 21 21 C 1.38262 * 119.22035 * 359.47237 * 20 19 18 22 22 N 1.31844 * 120.88422 * 0.30388 * 21 20 19 23 23 C 1.31834 * 121.78446 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47354 * 270.00192 * 1 2 3 25 25 H 1.09001 * 109.47410 * 29.99835 * 1 2 3 26 26 H 1.08998 * 109.47302 * 149.99869 * 1 2 3 27 27 H 1.08996 * 109.46531 * 29.99671 * 3 2 1 28 28 H 1.08995 * 109.47463 * 149.99891 * 3 2 1 29 29 H 0.96994 * 120.00602 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47071 * 59.99454 * 14 12 2 31 31 H 1.09001 * 109.46690 * 299.99605 * 14 12 2 32 32 H 1.08999 * 109.47453 * 59.98925 * 15 14 12 33 33 H 1.09006 * 109.46828 * 300.00037 * 15 14 12 34 34 H 1.09002 * 109.46851 * 59.99617 * 16 15 14 35 35 H 1.08998 * 109.47422 * 300.00280 * 16 15 14 36 36 H 1.07999 * 120.81005 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.39207 * 179.75678 * 20 19 18 38 38 H 1.08000 * 119.55595 * 180.28266 * 21 20 19 39 39 H 1.07997 * 119.66066 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5526 3.6184 -0.6732 8 14 3.4380 3.4167 -3.4339 9 1 2.3078 4.2591 -3.9013 10 1 4.6980 4.2001 -3.4962 11 1 3.5561 2.2194 -4.3044 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3794 -3.6353 0.0005 16 6 1.6144 -4.9603 0.0012 17 8 2.5429 -6.0465 0.0006 18 6 2.0235 -7.3024 0.0005 19 6 2.8618 -8.4128 0.0050 20 6 2.2858 -9.6727 -0.0004 21 6 0.9077 -9.7847 0.0010 22 7 0.1415 -8.7118 0.0015 23 6 0.6499 -7.4954 0.0011 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1383 0.5138 29 1 4.0288 4.4446 -0.8504 30 1 0.7589 -2.5302 -0.8897 31 1 0.7583 -2.5298 0.8903 32 1 3.0062 -3.5776 0.8904 33 1 3.0061 -3.5776 -0.8895 34 1 0.9874 -5.0182 -0.8886 35 1 0.9880 -5.0178 0.8913 36 1 3.9354 -8.2954 0.0091 37 1 2.9058 -10.5570 -0.0011 38 1 0.4528 -10.7643 0.0015 39 1 -0.0099 -6.6404 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079729372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:44 Heat of formation + Delta-G solvation = -44.600744 kcal Electronic energy + Delta-G solvation = -20416.216197 eV Core-core repulsion = 17131.237911 eV Total energy + Delta-G solvation = -3284.978286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.50 seconds Orbital eigenvalues (eV) -40.85533 -39.12860 -38.37751 -34.92830 -33.87074 -32.66159 -32.45531 -30.51602 -28.44088 -27.01379 -25.66657 -24.19971 -23.44172 -22.64727 -21.33068 -18.79922 -18.14072 -17.09218 -16.85538 -16.69675 -16.46345 -16.08530 -15.29435 -15.10478 -14.74851 -14.26363 -14.09153 -13.89695 -13.34631 -13.31467 -12.69763 -12.49050 -12.31976 -12.24528 -12.01672 -11.90019 -11.56205 -11.33436 -11.16608 -10.90488 -10.73560 -10.57593 -10.17131 -10.02752 -9.75469 -9.64522 -8.94909 -8.74064 -8.45063 -7.66919 -6.05704 -4.10639 0.79464 0.98572 2.78566 3.28925 3.35213 3.37572 3.43013 3.49361 3.95947 4.18802 4.35988 4.43392 4.53996 4.69145 4.76096 4.81802 4.96202 5.02284 5.19709 5.27805 5.29781 5.32199 5.39704 5.53408 5.67005 5.75081 5.77136 5.89236 6.08628 6.17786 6.18979 6.30830 6.99295 7.03649 7.42503 7.51676 7.63515 7.90503 8.21745 8.39047 8.88341 9.06782 9.54522 11.02417 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034908 B = 0.002656 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.923758 B =10537.952770 C =10791.546732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.504 3.496 13 O -0.541 6.541 14 C -0.136 4.136 15 C -0.103 4.103 16 C 0.057 3.943 17 O -0.305 6.305 18 C 0.086 3.914 19 C -0.113 4.113 20 C -0.132 4.132 21 C 0.053 3.947 22 N -0.451 5.451 23 C 0.014 3.986 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.157 0.843 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 -22.592 2.565 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.290 3.710 13 O -0.419 6.419 14 C -0.177 4.177 15 C -0.141 4.141 16 C -0.018 4.018 17 O -0.217 6.217 18 C 0.038 3.962 19 C -0.139 4.139 20 C -0.152 4.152 21 C -0.105 4.105 22 N -0.160 5.160 23 C -0.144 4.144 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.174 0.826 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.552 -22.387 2.614 23.771 hybrid contribution 0.757 0.607 -0.996 1.391 sum -6.794 -21.780 1.618 22.873 Atomic orbital electron populations 1.21643 0.81440 1.02612 1.00415 1.48171 1.06195 1.07902 1.71328 1.19295 0.92578 0.78101 0.97524 1.21425 1.36568 1.06256 0.92278 0.92500 1.24947 0.95343 0.96413 0.97480 1.69927 1.38414 1.14288 1.30753 0.86488 0.77694 0.78586 0.84601 1.20637 1.21057 1.19893 1.20197 0.88098 0.85050 0.77670 1.90683 1.13910 1.87231 1.50046 1.21562 0.99005 0.93261 1.03843 1.21235 0.98120 0.89146 1.05559 1.23004 0.91953 0.85266 1.01572 1.86121 1.36233 1.11569 1.87773 1.20134 0.93395 0.85975 0.96675 1.21008 1.00833 0.90177 1.01889 1.22029 0.96475 0.97421 0.99244 1.22656 0.90619 0.97468 0.99747 1.67519 1.40512 0.98490 1.09519 1.22978 0.91904 0.96083 1.03442 0.93729 0.90769 0.92423 0.95006 0.93822 0.92692 0.89167 0.89329 0.89936 0.89818 0.91607 0.91629 0.83912 0.84116 0.82613 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.24 59.84 0.61 1.87 16 2 N -0.60 -12.57 2.86 -182.97 -0.52 -13.09 16 3 C 0.24 6.39 5.16 -5.20 -0.03 6.36 16 4 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 12 C 0.50 10.11 7.67 -10.98 -0.08 10.03 16 13 O -0.54 -13.43 15.56 5.56 0.09 -13.34 16 14 C -0.14 -1.80 4.25 -27.88 -0.12 -1.92 16 15 C -0.10 -1.33 4.87 -26.74 -0.13 -1.46 16 16 C 0.06 0.57 4.75 37.15 0.18 0.75 16 17 O -0.31 -3.61 10.15 -19.46 -0.20 -3.80 16 18 C 0.09 0.93 6.71 -39.07 -0.26 0.67 16 19 C -0.11 -1.03 10.13 -39.14 -0.40 -1.43 16 20 C -0.13 -0.98 10.11 -39.46 -0.40 -1.38 16 21 C 0.05 0.45 11.18 -17.54 -0.20 0.25 16 22 N -0.45 -4.90 10.35 -13.13 -0.14 -5.04 16 23 C 0.01 0.15 10.22 -17.38 -0.18 -0.03 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 26 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 27 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.09 1.01 7.40 -51.93 -0.38 0.63 16 31 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 32 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 33 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.07 0.56 7.68 -51.93 -0.40 0.16 16 35 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 36 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.16 1.34 6.32 -52.49 -0.33 1.01 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -34.99 335.03 -7.00 -41.99 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.57 Total: -2.76 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.42 Total: 0.06 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.08 Total: -44.05 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.11 Total: -17.14 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.99 -7.00 -41.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.609 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.50 seconds