Wall clock time and date at job start Tue Mar 31 2020 01:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00439 * 2 1 4 4 C 1.50697 * 109.46890 * 270.00234 * 3 2 1 5 5 H 1.07998 * 120.00647 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99851 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00217 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00055 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46931 * 90.00102 * 8 6 4 10 10 H 1.48500 * 109.47495 * 209.99863 * 8 6 4 11 11 H 1.48500 * 109.47355 * 329.99981 * 8 6 4 12 12 C 1.34777 * 119.99784 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00115 * 180.02562 * 12 2 1 14 14 C 1.50702 * 120.00138 * 0.02562 * 12 2 1 15 15 C 1.52998 * 109.47505 * 179.97438 * 14 12 2 16 16 C 1.52994 * 109.47556 * 179.97438 * 15 14 12 17 17 O 1.42894 * 109.47573 * 179.97438 * 16 15 14 18 18 C 1.35910 * 117.00621 * 180.02562 * 17 16 15 19 19 C 1.39138 * 120.47706 * 180.24394 * 18 17 16 20 20 C 1.38535 * 118.37336 * 180.24194 * 19 18 17 21 21 C 1.38262 * 119.22035 * 359.47237 * 20 19 18 22 22 N 1.31844 * 120.88422 * 0.30388 * 21 20 19 23 23 C 1.31834 * 121.78446 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47354 * 270.00192 * 1 2 3 25 25 H 1.09001 * 109.47410 * 29.99835 * 1 2 3 26 26 H 1.08998 * 109.47302 * 149.99869 * 1 2 3 27 27 H 1.08996 * 109.46531 * 29.99671 * 3 2 1 28 28 H 1.08995 * 109.47463 * 149.99891 * 3 2 1 29 29 H 0.96994 * 120.00602 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47071 * 59.99454 * 14 12 2 31 31 H 1.09001 * 109.46690 * 299.99605 * 14 12 2 32 32 H 1.08999 * 109.47453 * 59.98925 * 15 14 12 33 33 H 1.09006 * 109.46828 * 300.00037 * 15 14 12 34 34 H 1.09002 * 109.46851 * 59.99617 * 16 15 14 35 35 H 1.08998 * 109.47422 * 300.00280 * 16 15 14 36 36 H 1.07999 * 120.81005 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.39207 * 179.75678 * 20 19 18 38 38 H 1.08000 * 119.55595 * 180.28266 * 21 20 19 39 39 H 1.07997 * 119.66066 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5526 3.6184 -0.6732 8 14 3.4380 3.4167 -3.4339 9 1 2.3078 4.2591 -3.9013 10 1 4.6980 4.2001 -3.4962 11 1 3.5561 2.2194 -4.3044 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3794 -3.6353 0.0005 16 6 1.6144 -4.9603 0.0012 17 8 2.5429 -6.0465 0.0006 18 6 2.0235 -7.3024 0.0005 19 6 2.8618 -8.4128 0.0050 20 6 2.2858 -9.6727 -0.0004 21 6 0.9077 -9.7847 0.0010 22 7 0.1415 -8.7118 0.0015 23 6 0.6499 -7.4954 0.0011 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1383 0.5138 29 1 4.0288 4.4446 -0.8504 30 1 0.7589 -2.5302 -0.8897 31 1 0.7583 -2.5298 0.8903 32 1 3.0062 -3.5776 0.8904 33 1 3.0061 -3.5776 -0.8895 34 1 0.9874 -5.0182 -0.8886 35 1 0.9880 -5.0178 0.8913 36 1 3.9354 -8.2954 0.0091 37 1 2.9058 -10.5570 -0.0011 38 1 0.4528 -10.7643 0.0015 39 1 -0.0099 -6.6404 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079729372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:42 Heat of formation + Delta-G solvation = -68.679847 kcal Electronic energy + Delta-G solvation = -20417.260345 eV Core-core repulsion = 17131.237911 eV Total energy + Delta-G solvation = -3286.022434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.55881 -40.66207 -39.18316 -36.64014 -35.05322 -34.58906 -33.22706 -31.25311 -30.13596 -28.24184 -27.16805 -25.30368 -24.49993 -23.79807 -22.40497 -20.05286 -19.15121 -18.71347 -18.03389 -17.55515 -17.46798 -17.31806 -17.02105 -16.45286 -16.07356 -15.33539 -15.14950 -14.84449 -14.45713 -14.23178 -14.00697 -13.87791 -13.63724 -13.47570 -13.35846 -13.11453 -12.87261 -12.84435 -12.51887 -12.47355 -12.28002 -12.19092 -11.72964 -11.67023 -10.67069 -10.65523 -10.61389 -10.43422 -9.44785 -9.41040 -8.23642 -6.38829 0.15519 0.30167 1.35406 1.38674 1.48891 1.85694 1.98220 2.34895 2.55415 2.83393 3.05662 3.55537 3.63695 3.73100 3.91265 3.94397 4.05514 4.10286 4.26357 4.36827 4.39438 4.48395 4.55124 4.66003 4.68881 4.76114 4.98593 5.01918 5.02674 5.07578 5.15846 5.22454 5.24834 5.55535 5.60503 5.84187 6.05052 6.26808 6.69035 6.80722 6.97527 7.27484 7.50104 8.83388 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034908 B = 0.002656 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.923758 B =10537.952770 C =10791.546732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.613 5.613 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.490 3.510 13 O -0.603 6.603 14 C -0.118 4.118 15 C -0.098 4.098 16 C 0.062 3.938 17 O -0.328 6.328 18 C 0.066 3.934 19 C -0.126 4.126 20 C -0.123 4.123 21 C 0.047 3.953 22 N -0.478 5.478 23 C 0.004 3.996 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.023 0.977 28 H -0.005 1.005 29 H 0.267 0.733 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.151 0.849 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.670 -24.623 1.642 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.344 5.344 3 C 0.135 3.865 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.279 3.721 13 O -0.485 6.485 14 C -0.157 4.157 15 C -0.137 4.137 16 C -0.012 4.012 17 O -0.241 6.241 18 C 0.019 3.981 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.110 4.110 22 N -0.187 5.187 23 C -0.153 4.153 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.041 0.959 28 H 0.013 0.987 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.168 0.832 37 H 0.192 0.808 38 H 0.200 0.800 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.688 -24.435 1.696 26.340 hybrid contribution 1.422 1.160 -0.651 1.947 sum -8.266 -23.275 1.045 24.722 Atomic orbital electron populations 1.21978 0.77584 1.04243 1.02742 1.48222 1.08601 1.06362 1.71222 1.18746 0.91089 0.80674 0.95986 1.21709 1.36827 1.06501 0.93063 0.92814 1.25901 0.94922 0.96492 1.02096 1.70050 1.39008 1.14769 1.33099 0.85390 0.78099 0.78210 0.78956 1.18669 1.20690 1.19756 1.21480 0.87856 0.86895 0.75839 1.90649 1.17001 1.88275 1.52609 1.21533 0.98560 0.88462 1.07191 1.21112 0.98044 0.91248 1.03252 1.22956 0.91313 0.83235 1.03711 1.86070 1.37277 1.12369 1.88355 1.20330 0.94016 0.85756 0.98029 1.21345 1.01407 0.90669 1.01804 1.22385 0.96534 0.97856 0.97466 1.23213 0.91207 0.98062 0.98566 1.67551 1.41454 0.99146 1.10598 1.23183 0.91932 0.96602 1.03576 0.90986 0.91855 0.88108 0.95880 0.98673 0.92394 0.85888 0.85335 0.92093 0.92562 0.89577 0.89248 0.83172 0.80794 0.79971 0.81017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.11 10.24 127.77 1.31 3.42 16 2 N -0.61 -25.50 2.86 -851.17 -2.43 -27.93 16 3 C 0.26 13.99 5.16 85.63 0.44 14.44 16 4 C -0.54 -31.55 9.39 25.60 0.24 -31.31 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 6 C 0.00 0.27 5.46 84.66 0.46 0.74 16 7 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 8 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.49 19.75 7.67 87.66 0.67 20.42 16 13 O -0.60 -31.50 15.56 -3.03 -0.05 -31.55 16 14 C -0.12 -2.81 4.25 29.85 0.13 -2.68 16 15 C -0.10 -2.49 4.87 30.59 0.15 -2.34 16 16 C 0.06 1.12 4.75 71.98 0.34 1.46 16 17 O -0.33 -7.52 10.15 -92.53 -0.94 -8.46 16 18 C 0.07 1.35 6.71 22.60 0.15 1.50 16 19 C -0.13 -2.14 10.13 22.56 0.23 -1.91 16 20 C -0.12 -1.53 10.11 22.35 0.23 -1.30 16 21 C 0.05 0.69 11.18 84.70 0.95 1.63 16 22 N -0.48 -9.49 10.35 -195.44 -2.02 -11.51 16 23 C 0.00 0.08 10.22 84.81 0.87 0.95 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 26 H 0.10 1.91 6.44 -2.39 -0.02 1.90 16 27 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 28 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 29 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.12 2.20 7.40 -2.39 -0.02 2.19 16 31 H 0.13 2.12 8.11 -2.39 -0.02 2.10 16 32 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 33 H 0.06 1.71 8.10 -2.38 -0.02 1.69 16 34 H 0.09 1.20 7.68 -2.39 -0.02 1.19 16 35 H 0.09 1.19 7.68 -2.39 -0.02 1.17 16 36 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 38 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 39 H 0.17 2.51 6.32 -2.91 -0.02 2.49 16 Total: -1.00 -81.60 335.03 4.07 -77.53 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 1.04 Total: 6.24 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 6.16 Total: 5.01 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -4.17 Total: -96.02 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.99 Total: -40.01 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -81.60 4.07 -77.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.850 kcal (2) G-P(sol) polarization free energy of solvation -81.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds