Wall clock time and date at job start Tue Mar 31 2020 00:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47105 * 2 1 4 4 C 1.37102 * 119.99800 * 264.77379 * 3 2 1 5 5 H 1.07998 * 120.00182 * 138.85115 * 4 3 2 6 6 C 1.38949 * 119.99874 * 318.84541 * 4 3 2 7 7 N 1.31408 * 120.00101 * 341.83063 * 6 4 3 8 8 Si 1.86801 * 119.99965 * 161.82994 * 6 4 3 9 9 H 1.48504 * 109.46793 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47350 * 120.00114 * 8 6 4 11 11 H 1.48509 * 109.47183 * 240.00209 * 8 6 4 12 12 C 1.34771 * 120.00185 * 84.76629 * 3 2 1 13 13 O 1.21297 * 120.00012 * 180.02562 * 12 3 2 14 14 C 1.50699 * 119.99811 * 0.02562 * 12 3 2 15 15 C 1.53002 * 109.46910 * 179.97438 * 14 12 3 16 16 C 1.53003 * 109.47105 * 179.97438 * 15 14 12 17 17 O 1.42898 * 109.47050 * 179.97438 * 16 15 14 18 18 C 1.35916 * 116.99907 * 179.97438 * 17 16 15 19 19 C 1.39142 * 120.47178 * 180.23911 * 18 17 16 20 20 C 1.38541 * 118.36861 * 180.24003 * 19 18 17 21 21 C 1.38256 * 119.22337 * 359.48256 * 20 19 18 22 22 N 1.31847 * 120.88575 * 0.29321 * 21 20 19 23 23 C 1.31843 * 121.77989 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.46667 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47099 * 299.99814 * 1 2 3 26 26 H 1.08993 * 109.47771 * 60.00066 * 1 2 3 27 27 H 1.09005 * 109.47415 * 240.00071 * 2 1 3 28 28 H 1.09002 * 109.47592 * 120.00027 * 2 1 3 29 29 H 0.97005 * 120.00400 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47472 * 59.99587 * 14 12 3 31 31 H 1.08999 * 109.46945 * 299.99228 * 14 12 3 32 32 H 1.08995 * 109.47723 * 59.99390 * 15 14 12 33 33 H 1.09007 * 109.47188 * 299.99500 * 15 14 12 34 34 H 1.08994 * 109.47338 * 59.99722 * 16 15 14 35 35 H 1.08999 * 109.46884 * 299.99482 * 16 15 14 36 36 H 1.07996 * 120.81589 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.38612 * 179.75409 * 20 19 18 38 38 H 1.08000 * 119.55572 * 180.27688 * 21 20 19 39 39 H 1.08005 * 119.65486 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3487 1.9914 -1.1824 5 1 2.0741 3.0218 -1.3536 6 6 3.0370 1.2842 -2.1606 7 7 3.6791 0.1819 -1.8451 8 14 3.0497 1.9004 -3.9240 9 1 2.2571 3.1529 -4.0163 10 1 4.4485 2.1670 -4.3452 11 1 2.4529 0.8709 -4.8124 12 6 2.1425 2.0521 1.1623 13 8 2.5464 3.1958 1.1622 14 6 1.7797 1.3811 2.4620 15 6 2.0116 2.3538 3.6201 16 6 1.6426 1.6728 4.9396 17 8 1.8597 2.5810 6.0213 18 6 1.5781 2.1296 7.2720 19 6 1.7584 2.9553 8.3774 20 6 1.4625 2.4488 9.6325 21 6 0.9914 1.1538 9.7439 22 7 0.8273 0.3990 8.6754 23 6 1.1021 0.8411 7.4641 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.1593 -0.3121 -2.5280 30 1 2.4016 0.4969 2.6005 31 1 0.7303 1.0872 2.4385 32 1 1.3899 3.2383 3.4818 33 1 3.0611 2.6474 3.6434 34 1 2.2639 0.7882 5.0782 35 1 0.5930 1.3797 4.9161 36 1 2.1233 3.9649 8.2601 37 1 1.5942 3.0600 10.5131 38 1 0.7548 0.7551 10.7194 39 1 0.9553 0.1930 6.6127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079733464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:39 Heat of formation + Delta-G solvation = -42.913393 kcal Electronic energy + Delta-G solvation = -20825.957698 eV Core-core repulsion = 17541.052581 eV Total energy + Delta-G solvation = -3284.905117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.74038 -38.76293 -38.20327 -35.09589 -33.56681 -32.45354 -31.94564 -30.36485 -29.44664 -27.41633 -24.91392 -23.87880 -23.12575 -22.29690 -21.37051 -18.94128 -18.16973 -17.01990 -16.77615 -16.66984 -16.41507 -15.76360 -15.10876 -14.67855 -14.58329 -14.16165 -13.84149 -13.70120 -13.25623 -13.01470 -12.84187 -12.59076 -12.35851 -11.97381 -11.82543 -11.58457 -11.27019 -11.18669 -11.05536 -10.85462 -10.60698 -10.34019 -10.27221 -10.08410 -9.92733 -9.65436 -8.93485 -8.62861 -8.41225 -7.42900 -6.32668 -4.01090 0.89037 1.08369 2.94853 3.15600 3.26034 3.32305 3.58968 3.91755 4.15774 4.28298 4.47060 4.62266 4.76660 4.83490 4.95706 5.01262 5.08369 5.18254 5.25861 5.33652 5.61608 5.65383 5.74509 5.80892 5.84697 5.85674 6.06650 6.18051 6.28481 6.31963 6.42160 6.50685 6.57141 6.85298 7.13510 7.19943 7.58239 7.73181 8.30060 8.51502 9.19855 9.39903 10.01961 10.72599 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041967 B = 0.002927 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.037351 B = 9562.886538 C = 9928.426863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.443 5.443 4 C -0.308 4.308 5 H 0.088 0.912 6 C 0.037 3.963 7 N -0.872 5.872 8 Si 0.917 3.083 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.463 3.537 13 O -0.580 6.580 14 C -0.133 4.133 15 C -0.098 4.098 16 C 0.056 3.944 17 O -0.305 6.305 18 C 0.088 3.912 19 C -0.114 4.114 20 C -0.133 4.133 21 C 0.051 3.949 22 N -0.451 5.451 23 C 0.014 3.986 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.048 0.952 29 H 0.267 0.733 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 -1.537 16.947 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.162 5.162 4 C -0.436 4.436 5 H 0.105 0.895 6 C -0.167 4.167 7 N -0.510 5.510 8 Si 0.744 3.256 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.251 3.749 13 O -0.464 6.464 14 C -0.173 4.173 15 C -0.136 4.136 16 C -0.019 4.019 17 O -0.217 6.217 18 C 0.039 3.961 19 C -0.140 4.140 20 C -0.152 4.152 21 C -0.107 4.107 22 N -0.160 5.160 23 C -0.144 4.144 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.173 0.827 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.737 -1.774 16.822 17.862 hybrid contribution 0.317 0.651 -1.019 1.250 sum -5.420 -1.123 15.803 16.745 Atomic orbital electron populations 1.22227 0.98249 1.00355 1.01541 1.21455 0.91575 0.85665 1.03462 1.43464 1.56148 1.11735 1.04882 1.19415 1.34733 0.98523 0.90939 0.89455 1.25427 0.94074 0.96571 1.00590 1.69930 1.29601 1.17608 1.33879 0.86018 0.78142 0.79012 0.82432 1.19200 1.20750 1.20638 1.20243 0.81988 0.87902 0.84800 1.90529 1.50156 1.18793 1.86897 1.21538 1.02535 0.99209 0.94027 1.21213 1.04180 0.98995 0.89221 1.23075 1.00902 0.92444 0.85446 1.86129 1.81317 1.42099 1.12177 1.20153 0.95747 0.93951 0.86202 1.20999 1.02032 1.00721 0.90292 1.22012 0.98782 0.97054 0.97387 1.22639 0.99203 0.91350 0.97472 1.67523 1.13143 1.36766 0.98582 1.23000 1.01661 0.93641 0.96125 0.93093 0.93869 0.92411 0.87905 0.93336 0.92343 0.89892 0.90172 0.90301 0.90156 0.91655 0.91737 0.83971 0.84199 0.82684 0.82327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 10.15 37.15 0.38 -2.47 16 2 C 0.10 2.15 5.41 -4.05 -0.02 2.13 16 3 N -0.44 -11.02 2.50 -114.81 -0.29 -11.31 16 4 C -0.31 -8.50 8.84 -14.93 -0.13 -8.63 16 5 H 0.09 2.53 7.82 -52.49 -0.41 2.12 16 6 C 0.04 0.99 4.95 -17.47 -0.09 0.91 16 7 N -0.87 -23.47 11.61 55.50 0.64 -22.82 16 8 Si 0.92 20.57 29.59 -169.99 -5.03 15.54 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 12 C 0.46 11.05 7.59 -10.99 -0.08 10.96 16 13 O -0.58 -16.05 15.89 5.54 0.09 -15.96 16 14 C -0.13 -2.28 4.31 -27.88 -0.12 -2.40 16 15 C -0.10 -1.55 4.87 -26.73 -0.13 -1.68 16 16 C 0.06 0.69 4.75 37.16 0.18 0.87 16 17 O -0.31 -4.12 10.15 -19.48 -0.20 -4.32 16 18 C 0.09 1.06 6.71 -39.07 -0.26 0.80 16 19 C -0.11 -1.17 10.13 -39.13 -0.40 -1.56 16 20 C -0.13 -1.11 10.11 -39.46 -0.40 -1.51 16 21 C 0.05 0.48 11.18 -17.54 -0.20 0.29 16 22 N -0.45 -5.41 10.36 -13.12 -0.14 -5.55 16 23 C 0.01 0.16 10.22 -17.37 -0.18 -0.02 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.68 6.60 -51.93 -0.34 0.34 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.10 2.41 5.76 -51.93 -0.30 2.11 16 28 H 0.05 0.91 6.66 -51.93 -0.35 0.57 16 29 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 30 H 0.08 1.31 7.41 -51.93 -0.38 0.93 16 31 H 0.08 1.20 6.54 -51.93 -0.34 0.86 16 32 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 33 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 34 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 35 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 36 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.16 1.62 6.32 -52.48 -0.33 1.29 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -32.49 328.06 -6.77 -39.26 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.34 Total: 2.52 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.45 Total: -2.31 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.22 Total: -39.68 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.11 Total: -20.28 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.49 -6.77 -39.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079733464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.657 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds